Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d048175_T004
CDS Infomation	cds chromosome:B73_RefGen_v4:9:151502884:151509935:-1 gene:Zm00001d048175 gene_biotype:protein_coding transcript_biotype:protein_coding description:J domain-containing protein required for chloroplast accumulation response 1
Sequence	ATGGCGGGCGCGCCGCTGCGGAGATCGGACCTTGACTTCGCCGACGTCTTTGGCGGCCCG CCGCGCCGCGTGTCTGGGAACGAGCACCGCTCGCAGCGCGGCTCGCAGGACACCTCGTCG TTCGAGTCCGCGACGAGGGCGGGGAGCGGCGGACCGGACACGCCCGTTTTCGGGGACCGG GGGAGCTCCGACCGAAGAAGGCAGCTCGGGGAGGAGTTCTACAAGGACATATTCCCCGGG AGCGAGGCAGCGTCGCCCAGGCGGAGCGGCGCCGGGGATTGGGGGAATGTGTTCGGCGCG CAGGCTTCGCCTGTCTCCACGGCCCGCCCGCGATCGAGCTTCTCCATTCGGTTCAACAGA GGCATGGACAGTTCAATGCCTACTTCTCCCTCTCAGCAAATGTCCAACAGAAACGATGAT GGCACATCTTATGCTTATAGTGTTCCAACTTCACCCAATGCATCCATGAACAATTATCTT GCTCAAGGGGCAGCCCGACAAGATTCGAAGAAGAATCCCTTCTCATGGCATCGCTATCCA TTTCTATCTAGGTTCCGTTCTCAAAGTGGAGAAAAGAAGAGCACATCTAATCATGTCAGC TCAATGGACAATGAATTTGAAGGGACTCCTGTTAACTTGGAAAGTATCATGGCCAATAAC AAGTTCCATTTTTCCTTCTACAAGTGGGCAGGCAAAGGAGCCTTGTTAGTGTTGCCAGCT ACTGCACAAGAAAAGTCCGTAGACATCATTGGACTGAGAAGCTTCCCTCAAGTGGTCATT CAAGGTATTGATCTAATTGATTGTGAAGACAGCATGTCAACTGCCACCGGAACAGCCAAA AATCAGACAGATTACGAAGATTCGAAATCTGGAAAACATAGCGCAAACTCAGCAACCAAG GATGGAGCTATTCCTTTACTCTTTGAAGACTACATGCAAGGTAATAAATACCAAAAAACA ATTATTCTTTTATTTAGAGTGCCGCGGACATTCCATTACCAACATGATCTCAGATCTTAG

Peptide Sequence

PEP ID	Zm00001d048175_P004
PEP Infomation	pep chromosome:B73_RefGen_v4:9:151502884:151509935:-1 gene:Zm00001d048175 transcript:Zm00001d048175_T004 gene_biotype:protein_coding transcript_biotype:protein_coding description:J domain-containing protein required for chloroplast accumulation response 1
Sequence	MAGAPLRRSDLDFADVFGGPPRRVSGNEHRSQRGSQDTSSFESATRAGSGGPDTPVFGDR GSSDRRRQLGEEFYKDIFPGSEAASPRRSGAGDWGNVFGAQASPVSTARPRSSFSIRFNR GMDSSMPTSPSQQMSNRNDDGTSYAYSVPTSPNASMNNYLAQGAARQDSKKNPFSWHRYP FLSRFRSQSGEKKSTSNHVSSMDNEFEGTPVNLESIMANNKFHFSFYKWAGKGALLVLPA TAQEKSVDIIGLRSFPQVVIQGIDLIDCEDSMSTATGTAKNQTDYEDSKSGKHSANSATK DGAIPLLFEDYMQGNKYQKTIILLFRVPRTFHYQHDLRS

Transcript Sequence

Transcript ID	Zm00001d048175_T004
Transcript Infomation	cdna chromosome:B73_RefGen_v4:9:151502884:151509935:-1 gene:Zm00001d048175 gene_biotype:protein_coding transcript_biotype:protein_coding description:J domain-containing protein required for chloroplast accumulation response 1
Sequence	ATCGCAATCCGACGCGGACGTGGTGGCGCAACGGACAAGCAAATCCGGACCGCCCAGCGC CGTTCGCCCGCGCGAGCACGCCGCTGCGGGAACGCCAGCCATGCTAAATCCCAGCGCCGT TCGCCCGCTCCCCGCCACAAGCTCCTCCTCCTCTCCTCCCTACACACTCCAGAGCCAGAG GCAGCACGTGCTGCCGTGCTCGAGCACAGCTAGGCCGCAGCTGCATCACCATGGCGGGCG CGCCGCTGCGGAGATCGGACCTTGACTTCGCCGACGTCTTTGGCGGCCCGCCGCGCCGCG TGTCTGGGAACGAGCACCGCTCGCAGCGCGGCTCGCAGGACACCTCGTCGTTCGAGTCCG CGACGAGGGCGGGGAGCGGCGGACCGGACACGCCCGTTTTCGGGGACCGGGGGAGCTCCG ACCGAAGAAGGCAGCTCGGGGAGGAGTTCTACAAGGACATATTCCCCGGGAGCGAGGCAG CGTCGCCCAGGCGGAGCGGCGCCGGGGATTGGGGGAATGTGTTCGGCGCGCAGGCTTCGC CTGTCTCCACGGCCCGCCCGCGATCGAGCTTCTCCATTCGGTTCAACAGAGGCATGGACA GTTCAATGCCTACTTCTCCCTCTCAGCAAATGTCCAACAGAAACGATGATGGCACATCTT ATGCTTATAGTGTTCCAACTTCACCCAATGCATCCATGAACAATTATCTTGCTCAAGGGG CAGCCCGACAAGATTCGAAGAAGAATCCCTTCTCATGGCATCGCTATCCATTTCTATCTA GGTTCCGTTCTCAAAGTGGAGAAAAGAAGAGCACATCTAATCATGTCAGCTCAATGGACA ATGAATTTGAAGGGACTCCTGTTAACTTGGAAAGTATCATGGCCAATAACAAGTTCCATT TTTCCTTCTACAAGTGGGCAGGCAAAGGAGCCTTGTTAGTGTTGCCAGCTACTGCACAAG AAAAGTCCGTAGACATCATTGGACTGAGAAGCTTCCCTCAAGTGGTCATTCAAGGTATTG ATCTAATTGATTGTGAAGACAGCATGTCAACTGCCACCGGAACAGCCAAAAATCAGACAG ATTACGAAGATTCGAAATCTGGAAAACATAGCGCAAACTCAGCAACCAAGGATGGAGCTA TTCCTTTACTCTTTGAAGACTACATGCAAGGTAATAAATACCAAAAAACAATTATTCTTT TATTTAGAGTGCCGCGGACATTCCATTACCAACATGATCTCAGATCTTAGCAGCTAAAAA TACTGAACCTATCTGCTCTAAGTATATTTCGTCCCTTTGCATAGTTAAAAAGAGGAGAGT AACAGCTAGAGTACAACTACAAAGTGCATTCAGCTAATCAAACTCTTGTAATAGCAAAGA GCATGCCCTTTTCTTATGGAACTAATCAAACTGTTGTTATTCAAAGTATCAAAATTCTTG TTTGCACCTTTCTCTTCATGAATAGATGGATTCCAGCTTATGTCATTTATCTGCAGGAAC GAAACAGAGCAATGATCATACAAAGAATGATGTTTCATCAACTACCCTGAGTTCTAAAAT TTCTCGATCACCTTCAGGGGAGAGAAGTCGTAGTAGCAGGGTGAAGGAAAAGATGAAGGG TTTCATAAAACTATTTAGCCCTGAGAGTTCACCAAAGCGCAAACGAGCACCGGAAACACA AAGGCAAACATCTGTGGGGAAAAATGGAACCAAAACTGAACTGCATGATAAGTTCAGCAT GTCCAGTTTGGAGGCCAGTGAGGATGTGGAAACGGTACAAATGAACAGCCAGAATGCTTT TACTGCCGAACCTTTTCCAATGACTGAAGTGCAAGAGAGGTTGGACAAACCAGTTTTGAC AGCGAATAGTAAAATGGATACAGCTACGGGAAGTAATGAGGCCGCTTCTAATGAGCCCAT CCATGATGATACAAAAGACAAAGCGGCCAACACAATAGAGCATGAGGACATTGAAGATCT TGATGGATGTGTGGTATGTGCAAACTGCAAAGTCTTTCTATGCAAATGGGTGCCTAGCGA AGTTTGTTAGGTGGCTTTAGTAGGCTATTAGCACTTCGACTCCCCATGGGAGCGAAGAAG ATTGAGGTTAAAAAAATCCCTTATTTGTCCAAACCAAAGTATAGGTCAAAGGACTGGCCT AGGTTCTCACATGAGCAATAGTGTCTTGGGGAAGAGATTTGGGAGTTTTCTCAACCTGTG TGAGAAGGTTATCTTCTACCTTAATAAGAATATCCAAGGGTTGTCTTACCCTGTGGGTAG AGAGGGGGGGGTCAAAGTCTTTTTTATTTTTTAGATTTATTGTTTTATTAGACATGCAGT TGGCAGCTACAGCTGTAATATTTGCCAATCCATCAACCAAATTATTCATACAACCAAATT CCCATCAAATGTCCTACAACGTCTTGGAAGGTGAAATTCAGCATTAGATGGCACTAGGTG ACCTATTGATTTATATGTGTTTCCACCCAACCAAGGCTCATGACTGCTAGAAACTGGCCT AATTTAATTGCCAAATACTCAAGCCTGGATGATTTGACAAACTTTTTTTCTATTCCATCA TGTAGTTCAATATTTCATGAAAAAACCTAGCCAAAGCTCAAAGCCTGGATGATATGAGTC CTACTTAGTAAAACCTGGTGTTTTAATATGCATTATAGTGGCATTTAGCATCTAGCTACT GGTTTCCTGCACATCAGATAGACAGATACCGAGTGCACATTTTTGAGATTCAGTTGCTAC ACCTTTGTTCCATGGCTAACACTTTGTTTAAAACACTGCTCCTACACCTTGATATCCACA AATGTACCTATGAGATTCTAAACTAACACCCAATAAGTGTCATTTACTGTTGTATTAAGC AAATTGACTGAAGGGTATAGATGCCTATGCATGTGTCTTTGTTGTATTTGGTCTCATATA GAGAGTTCTTGTTCTACAGTCTCTATTTTGTATCGTCTATATATTCGGGTCTAGTGCCCT CATTTTAAATACAGTGCAATTTATAACAATGGTATAAAGAGCTAATTTTTAGGGTTAGGA TTCTTCCCTTCTCTACGTTTTTTTTCTCGCATGTCGCATTTGTACTTGTTACGGCCTCTA CCTTGAGTTTGAGGGGTTGTTAGATGAGTGTAATTCATGGCACTGTGGCAAAGAATGTCA ACCTACAGTCATCGTGCAGTAACAAAAATCAGCATGAATTTGTTTTACAACATAAACTAT TGTTGATCCATAGTTAATAGTAAACTAGAGCCTCAAGATGTAGCAAAGAATGTTTTCTCA GGTGCACATTTTTAGCTGTTCCCTGTCATATGGAAATGTTCTCTTGTTATGGCTTCTTTA CCTAACAAATTTATATTTCGTCAATCAGGTTGAGCATTTTTCTGAAGATCATGTTCTTCA TAATGATCAGGAAAAGGAGCTAATAAAGGTACAATATGGAGGATAAATATGTGGCCTCTA AGTCTTCTTGTTTCACTTCCATATTCTATTTGTCCAATTTTATTGTTTCCTGGAATGTAG ATATCAGAAGCTAAAATTCGCGAATGGTCTAGGGGAAAAGAAGGAAATATTAGGTCATTG CTTTCAACACTGCAATATGTAAGTGCAAGAGTATCAACCGTGCGTAATTTCTTACTGTTT ACTATTGCTAATCTTTTCTTCCTAAGAATGATAAATGTTTTATCCTCTCTTTTGCTCTAG CCTAGGTTTTGCTTATGTTATTGTTCTTCTTTAATGGCTGATGGCATCGCCTGATTTTAT ATATACGGAAAAAATATTCTACATATTTTATTCTTGTTTTATGTCTTCTGGAAATGCTGC GTGAAATTATTTCCCTTTTGTTTTATTCTCTTTGAAGTAGATCATAAATAATGTCTCCCA CGGTCCCACCACTTCGGAATTACAAAAGTTTGTGCTCATTTTAGGTCTTATGGCCTGAGA GTGGATGGAAACCAGTTCCACTTGTTGATATAATTGAAGGAGCAGCAGTTAAGAAGGCTT ACCAGAAAGCATTATTGTGCCTTCATCCAGATAAGTTGCAGCAACGAGGTGCTGCCATGC ATCAGAAGTGTATAGCAGAGAAGGTTTTTGACATTTTACAGGTATACTAGACTTATCACA AACATATTTCTGATTTACTTAGGAATTGGATGGTGAGTAAATCTAGTCTGAGATATACAA AATACAATATTTGAGAATGGAACGGTGGAGGCATGCGGACCAAGTTTTACCTGGCACCAT TTTAAAACGTTTTCTGCTGTGCTTCAGTATGTAGATGATGCTGACGTTAAATTATATATA ATGCATTGTACACATTCTAATTTCTACCTATGACATTTACGAACCATCCAGTTTTAAGAA GTAGCATACCTATCTGAATGTTTTTCAGGTGCTATTAATTACTGCTTTCCCTTGTTGAAA CACTCCAGCAGTCCAAATATGCTGTTCCGGTTGATGTCTTGTCACGACACTCAAGTCTAG TCCTATCCTATTGTGCATTTGTACTGATTGCTCAACGATGTTGGTATCTTACATTCCTAT CAGCAAAAACGCTTGACATGTTTTCTCTTATATGTATGCAGGAAGCATGGAAGGAATTCA ATTCGGTCACTTTTGGATAGTACTAGGAGTTTATTTCACTACTGTATTGGTCCAATGATC TATCGCACAGGCATATTGCTTCCCGGTGTCTGCAACAGTTAGTTGGTTGAAACAACCTAG AACAGTACAGCAAATGGGCAACCGAGAGTTCGGTTTGTGAATTTCGGTGCACAGTCAATG CCGACCTCCGCCATTTCTTCAAAATTCCGACTGTAACAAGTGTAATATGTAATATTGGTT AATCAGGTTTAATGGATCCAGACGATGACTGAAATGTCATTTAAGGAATGCTTTGTGCAC AG