Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d048102_T005
CDS Infomation

cds chromosome:B73_RefGen_v4:9:150279334:150284511:-1 gene:Zm00001d048102 gene_biotype:protein_coding transcript_biotype:protein_coding description:Peptidase beta subunit

Sequence

ATGCCGTACGATCGCATCGCCGAAGCCGTTAACGCCAGGCTCCGGCGGCTTGAGCACCCA
GACCCGCGCTTCCTCCGCTATGCAAGCCCCGTGCCGTCCCACGCCGACCACACGGCCATC
CTTGCGGCGCCGGAGACCCGGGTCACCACGCTGCCCAACGGCCTGCGCGTGGCCACGGAG
TCGTCCCTCGCCGCGCGCACGGCTACGGTGGGTGTGTGGATCGATGCGGGCAGCAGGTAC
GAGAACGAGGAGGCGGCCGGCGTCGCGCATTTTGTCGAGCACATGCTGTTCAAGGGCACA
GGGAAGCGTAGCGCCGCGCAGCTGGAGCAGGAGATTGAGGACATGGGTGGCCACCTCAAC
GCTTACACGTCGCGGGAGCAGACGACCTACTACGCCAAGGTGCTTGACAAGGACGTGCCC
CGTGCGATGGAGGTCCTCGCGGACATCCTGCAGAACTCCAATCTCGACCAGGCCCGCATT
GAACGTGAGCGCGAAGTGATCCTACGAGAGATGGAGGAGGTTGAGGGACAGTCTGAAGAA
GTTATATTTGATCATCTCCATGCAACTGCATTCCAATATACATCCCTTGGCAGACCAATC
TTGGGTTCTGCAGATAACGTCAAGTCAATCACCAAAGAGGACCTCGAGAACTACATTGCA
ACTCATTATACAGCTTCTAGAATGGTTATCACAGCTGCAGGCAATGTTAAACATGAAGAC
ATTGTTGAGCAGGCAAAGAAGTTGTTCAGCAAGCTATCAACTGACCCTACAACAACAAAC
ATGTTGGTCTCTAAGCAGCCAGCCTCTTTCACTGGTTCTGAGGTTCGAATCATTGATGAT
GACATGCCCCTCGCTCAATTTGCTGTTGCTTTCAATGGAGCATCATGGGTGGATCCTGAT
TCTGTTGCACTGATGGTTATGCAAACAATGCTTGGTTCATGGAACAAGAGTGCTGGTGGA
GGAAAGCACATGGGTTCAGAGCTTGTGCAGAGGGCAGCAATCAATGACATCGCTGAGAGT
GTAATGGGATTCAATACGAATTACAAGGACACTGGTCTTTTTGGTGTCTATGCTGTTGCT
AAGGCTGATTGCTTGGATGATTTGGCTTTTGCAATTATGCATGAGATGAGCAAATTGTCA
TACCGGGTTACGGAAGAAGATGTTATCCGTGCACGTAATCAGCTGAAGTCCTCTATCCAA
CTCCACCTTGATGGTTCAACTGCTGTTGTTGAGGACATTGGCCGTCAGCTGCTGACCTAT
GGACGAAGAATTCCTACCCCCGAGCTTTTTGCAAGAATAGATGCTGTTGATGCAAGCACT
GTGAAGCGTGTTGCAAACCGCTTCATCTTTGATCAGGATGTTGCTATTGCTGCGATGGGG
CCGATCCAAGGACTTCCAGACTACAACTGGTTCAGACGCCGGACCTACATGCTCCGTTAC
TAG

Peptide Sequence

PEP ID

Zm00001d048102_P005
PEP Infomation

pep chromosome:B73_RefGen_v4:9:150279334:150284511:-1 gene:Zm00001d048102 transcript:Zm00001d048102_T005 gene_biotype:protein_coding transcript_biotype:protein_coding description:Peptidase beta subunit

Sequence

MPYDRIAEAVNARLRRLEHPDPRFLRYASPVPSHADHTAILAAPETRVTTLPNGLRVATE
SSLAARTATVGVWIDAGSRYENEEAAGVAHFVEHMLFKGTGKRSAAQLEQEIEDMGGHLN
AYTSREQTTYYAKVLDKDVPRAMEVLADILQNSNLDQARIEREREVILREMEEVEGQSEE
VIFDHLHATAFQYTSLGRPILGSADNVKSITKEDLENYIATHYTASRMVITAAGNVKHED
IVEQAKKLFSKLSTDPTTTNMLVSKQPASFTGSEVRIIDDDMPLAQFAVAFNGASWVDPD
SVALMVMQTMLGSWNKSAGGGKHMGSELVQRAAINDIAESVMGFNTNYKDTGLFGVYAVA
KADCLDDLAFAIMHEMSKLSYRVTEEDVIRARNQLKSSIQLHLDGSTAVVEDIGRQLLTY
GRRIPTPELFARIDAVDASTVKRVANRFIFDQDVAIAAMGPIQGLPDYNWFRRRTYMLRY

Transcript Sequence

Transcript ID

Zm00001d048102_T005
Transcript Infomation

cdna chromosome:B73_RefGen_v4:9:150279334:150284511:-1 gene:Zm00001d048102 gene_biotype:protein_coding transcript_biotype:protein_coding description:Peptidase beta subunit

Sequence

CGCTATTCCTCCTGCCCCATCTCCTCCCGATCCATCCGAGCCCAAACCCTAGTCCAGCCA
GATCTCCGCCGCCGCCGGCGAGAGCACGGCATCAGATCCGCCGCGATGGCGTTCCGCCGC
ATCTTATCCACAGCGCCCCCGACGCGACCCCGGTGCGCGCTCCCGTGATGCCGTACGATC
GCATCGCCGAAGCCGTTAACGCCAGGCTCCGGCGGCTTGAGCACCCAGACCCGCGCTTCC
TCCGCTATGCAAGCCCCGTGCCGTCCCACGCCGACCACACGGCCATCCTTGCGGCGCCGG
AGACCCGGGTCACCACGCTGCCCAACGGCCTGCGCGTGGCCACGGAGTCGTCCCTCGCCG
CGCGCACGGCTACGGTGGGTGTGTGGATCGATGCGGGCAGCAGGTACGAGAACGAGGAGG
CGGCCGGCGTCGCGCATTTTGTCGAGCACATGCTGTTCAAGGGCACAGGGAAGCGTAGCG
CCGCGCAGCTGGAGCAGGAGATTGAGGACATGGGTGGCCACCTCAACGCTTACACGTCGC
GGGAGCAGACGACCTACTACGCCAAGGTGCTTGACAAGGACGTGCCCCGTGCGATGGAGG
TCCTCGCGGACATCCTGCAGAACTCCAATCTCGACCAGGCCCGCATTGAACGTGAGCGCG
AAGTGATCCTACGAGAGATGGAGGAGGTTGAGGGACAGTCTGAAGAAGTTATATTTGATC
ATCTCCATGCAACTGCATTCCAATATACATCCCTTGGCAGACCAATCTTGGGTTCTGCAG
ATAACGTCAAGTCAATCACCAAAGAGGACCTCGAGAACTACATTGCAACTCATTATACAG
CTTCTAGAATGGTTATCACAGCTGCAGGCAATGTTAAACATGAAGACATTGTTGAGCAGG
CAAAGAAGTTGTTCAGCAAGCTATCAACTGACCCTACAACAACAAACATGTTGGTCTCTA
AGCAGCCAGCCTCTTTCACTGGTTCTGAGGTTCGAATCATTGATGATGACATGCCCCTCG
CTCAATTTGCTGTTGCTTTCAATGGAGCATCATGGGTGGATCCTGATTCTGTTGCACTGA
TGGTTATGCAAACAATGCTTGGTTCATGGAACAAGAGTGCTGGTGGAGGAAAGCACATGG
GTTCAGAGCTTGTGCAGAGGGCAGCAATCAATGACATCGCTGAGAGTGTAATGGGATTCA
ATACGAATTACAAGGACACTGGTCTTTTTGGTGTCTATGCTGTTGCTAAGGCTGATTGCT
TGGATGATTTGGCTTTTGCAATTATGCATGAGATGAGCAAATTGTCATACCGGGTTACGG
AAGAAGATGTTATCCGTGCACGTAATCAGCTGAAGTCCTCTATCCAACTCCACCTTGATG
GTTCAACTGCTGTTGTTGAGGACATTGGCCGTCAGCTGCTGACCTATGGACGAAGAATTC
CTACCCCCGAGCTTTTTGCAAGAATAGATGCTGTTGATGCAAGCACTGTGAAGCGTGTTG
CAAACCGCTTCATCTTTGATCAGGATGTTGCTATTGCTGCGATGGGGCCGATCCAAGGAC
TTCCAGACTACAACTGGTTCAGACGCCGGACCTACATGCTCCGTTACTAGATTAATCAGC
CGGTGTACCCATGTTTACCGTCTGCAAAAGACAAGATAAAATTTGCCTCTTTTAGCGTCA
GTATATTAAGGCCTCAGCACTGCACATTACGTGCTGCGATGGAGGAATTTTTTGAGAATT
TGTTTTATTTCTTGTCGTGTCCAAAATCCACAAATCTGTCAATAATGATAGGCAGGTTCG
ACTGACGTGGCTGACTTGGTTGGCCACCGGATGTTTTCTTACAACGAGTCATGAACCATA
CCGTCCCATCTTTTGTTGGAAGATTTTACTTTGGCAAATAATTTTGTGGCACGTTATAT