Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d048100_T006
CDS Infomation

cds chromosome:B73_RefGen_v4:9:150166227:150170045:-1 gene:Zm00001d048100 gene_biotype:protein_coding transcript_biotype:protein_coding description:SecY protein transport family protein
Sequence

ATGGCTGGCGGCTTCAGGGTACTGCATCTGGTCAGGCCTTTTCTTGCTTTCTTGCCAGAG
GTGCAGAGCGCGGATAGGAAGATACCGTTCAGAGAAAAAGTTATCTACACTGTTATTTCC
CTCTTCATTTTCCTGGTCTGCAGCCAGCTCCCACTCTATGGCATTCATTCAACAACTGGA
GCTGATCCTTTCTACTGGATGCGTGTTATCCTCGCATCAAACCGTGGCACTGTGATGGAG
TTGGGTATTACTCCAATTGTGACATCTGGGATGGTAATGCAACTTCTTGTTGGATCGAAG
ATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCTGAATGGTGCACAAAAG
TTGCTTGGTATCCTGATTGCTATTGGGGAAGCTGTGGCATATGTCCTGTCTGGAATGTAT
GGCAGTGTAAGCCAACTTGGAACAGGGAATGCTATCCTCATTATACTTCAGCTTTTCTTT
GCTGGCATCATTGTCATCTGTCTGGATGAACTTCTCCAGAAAGGTTATGGCTTGGGATCT
GGCATTTCTCTGTTCATTGCTACCAATATCTGCGAGAATATCATCTGGAAGGCATTTAGC
CCCACAACCATCAACAGTGGTCGTGGTGCTGAATTTGAAGGGGCTGTCATTGCACTGTTT
CATCTGTTGATTACGAGAACCGATAAAGTCCGTGCTCTTCGTGAGGCTTTCTACCGCCAG
AACCTTCCAAATGTGACCAATTTGCTTGCCACAGTCTTGGTCTTCCTCATAGTTATCTAT
TTCCAAGGCTTCCGTGTTGTCCTTCCAGTGAGATCAAAGAATGCTCGTGGCCAGCAAGGC
TCATATCCAATTAAGCTATTCTACACTTCAAACATGCCCATCATTCTGCACTCTGCACTG
ATTACCAACCTCTATTTCATATCCCAGCTTCTCTACAGGAAGTACAGTGGAAACTTCCTT
GTTAACCTTCTTGGGATGTGGAAGGAGTCTGAATACTCTGGCCATTCTGTTCCTGTTGGT
GGTCTTGCTTACTATGTAACTGCCCCATCAAGTTTGGCTGATGTCCTTGCAAATCCATTC
CATGCACTGTTTTATGTGGTCTTCATGCTGTCAGCTTGCGCTCTGTTCTCAAAAACGTGG
ATTGAAGTTTCTGGTTCATCAGCAAAGGATGTTGCTAAGCAGCTCAAGGTACAAACAGCT
TTGCACATCTTTTTATGTAAAATTCTGGGCCTGTTCGGTTTCAGCGTAAAGTGCTGCGAA
GCTGCTGTTACAGCCAGCAGCTACAGTACTCTGTGA

Peptide Sequence

PEP ID

Zm00001d048100_P006
PEP Infomation

pep chromosome:B73_RefGen_v4:9:150166227:150170045:-1 gene:Zm00001d048100 transcript:Zm00001d048100_T006 gene_biotype:protein_coding transcript_biotype:protein_coding description:SecY protein transport family protein
Sequence

MAGGFRVLHLVRPFLAFLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTG
ADPFYWMRVILASNRGTVMELGITPIVTSGMVMQLLVGSKIIEVDNSVREDRALLNGAQK
LLGILIAIGEAVAYVLSGMYGSVSQLGTGNAILIILQLFFAGIIVICLDELLQKGYGLGS
GISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRTDKVRALREAFYRQ
NLPNVTNLLATVLVFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILHSAL
ITNLYFISQLLYRKYSGNFLVNLLGMWKESEYSGHSVPVGGLAYYVTAPSSLADVLANPF
HALFYVVFMLSACALFSKTWIEVSGSSAKDVAKQLKVQTALHIFLCKILGLFGFSVKCCE
AAVTASSYSTL

Transcript Sequence

Transcript ID

Zm00001d048100_T006
Transcript Infomation

cdna chromosome:B73_RefGen_v4:9:150166227:150170045:-1 gene:Zm00001d048100 gene_biotype:protein_coding transcript_biotype:protein_coding description:SecY protein transport family protein
Sequence

TCAATCTCTCTCTTCTCCTCGCCTCGCCTTGGTGTTCACGCCGTCGCTAGCGCCTGCCGC
GGCGAAGCTTCTGCCCTCCCCGGCGCCGGGCTCGGGTCGTCGTCGGCCAGGAAGATGGCT
GGCGGCTTCAGGGTACTGCATCTGGTCAGGCCTTTTCTTGCTTTCTTGCCAGAGGTGCAG
AGCGCGGATAGGAAGATACCGTTCAGAGAAAAAGTTATCTACACTGTTATTTCCCTCTTC
ATTTTCCTGGTCTGCAGCCAGCTCCCACTCTATGGCATTCATTCAACAACTGGAGCTGAT
CCTTTCTACTGGATGCGTGTTATCCTCGCATCAAACCGTGGCACTGTGATGGAGTTGGGT
ATTACTCCAATTGTGACATCTGGGATGGTAATGCAACTTCTTGTTGGATCGAAGATCATT
GAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCTGAATGGTGCACAAAAGTTGCTT
GGTATCCTGATTGCTATTGGGGAAGCTGTGGCATATGTCCTGTCTGGAATGTATGGCAGT
GTAAGCCAACTTGGAACAGGGAATGCTATCCTCATTATACTTCAGCTTTTCTTTGCTGGC
ATCATTGTCATCTGTCTGGATGAACTTCTCCAGAAAGGTTATGGCTTGGGATCTGGCATT
TCTCTGTTCATTGCTACCAATATCTGCGAGAATATCATCTGGAAGGCATTTAGCCCCACA
ACCATCAACAGTGGTCGTGGTGCTGAATTTGAAGGGGCTGTCATTGCACTGTTTCATCTG
TTGATTACGAGAACCGATAAAGTCCGTGCTCTTCGTGAGGCTTTCTACCGCCAGAACCTT
CCAAATGTGACCAATTTGCTTGCCACAGTCTTGGTCTTCCTCATAGTTATCTATTTCCAA
GGCTTCCGTGTTGTCCTTCCAGTGAGATCAAAGAATGCTCGTGGCCAGCAAGGCTCATAT
CCAATTAAGCTATTCTACACTTCAAACATGCCCATCATTCTGCACTCTGCACTGATTACC
AACCTCTATTTCATATCCCAGCTTCTCTACAGGAAGTACAGTGGAAACTTCCTTGTTAAC
CTTCTTGGGATGTGGAAGGAGTCTGAATACTCTGGCCATTCTGTTCCTGTTGGTGGTCTT
GCTTACTATGTAACTGCCCCATCAAGTTTGGCTGATGTCCTTGCAAATCCATTCCATGCA
CTGTTTTATGTGGTCTTCATGCTGTCAGCTTGCGCTCTGTTCTCAAAAACGTGGATTGAA
GTTTCTGGTTCATCAGCAAAGGATGTTGCTAAGCAGCTCAAGGTACAAACAGCTTTGCAC
ATCTTTTTATGTAAAATTCTGGGCCTGTTCGGTTTCAGCGTAAAGTGCTGCGAAGCTGCT
GTTACAGCCAGCAGCTACAGTACTCTGTGAGGACGCCAAACAGGCCCAAATTCATCTTCC
ATGCTAAGGTAGTTTATCATATATTTTTTTTGTCTATATTAAAAATATATGATCGATACA
TTTAGATGCTAGTATGAGTACACTAATCATTAACAACAACAAAGCCTTTTAGTCCTAAGC
AAGTTGGGATAGACTGAGTTAAAAACCCAACAGAACCCACAAGTCAAGGTTTGGACACAT
GGATAGCTGTTTTCATGCACTCCTATTAAAGGCTGAATCTTTGGGTATATCCTATCCTTT
CAAGTATTGAGTATACTATTCATCACACTTTAAAATACATTTGATTGTTTGTTGTCAGAA
CTTTGCGTATTTAGTATATGATACTGTACTACATTTTCTGGTTTTTGAATCCATGTGGAA
ACCTAAGATGGATGGACATGTTCTGTGTTGAGAGAAACACAATCTTTCTAATGGGATATG
ATGTATCTTAATGAATTTTCACATGCCTGTGTACCGGCAGTTTGCTTAACGTGTTGAGCT
ACTGTTTTATATTTGGCTCACTAATTATGCAAACTCACTATGCAACAATTACCTGTGATC
ATCCTCTGACACTGGATATTCTGCAGGAACAACAAATGGTGATGCCAGGACATCGTGAGT
CAAACTTGCAGAAGGAACTGAACCGATACATCCCCACTGCTGCTGCATTTGGTGGAGTAT
GCATCGGCGCATTGACTGTCCTGGCTGATTTCATGGGTGCAATTGGTTCAGGAACTGGAA
TACTGCTGGCTGTGACAATCATATACCAATACTTTGAAACCTTCGAGAAGGAAAGGGCAA
CGGAGCTTGGTTTCTTTGGTTTTTGATTAGTAGCTGTGGAACCTTGAACCGATAGCTGAA
TTTTCTTGTAAGGCCCTGTTTGGAAGCAACCCGGTTTTTAAGAAACCAGTTTTTATATTT
TAGCTAGGAGAGGCCAGCTTCTCAGTTTTTAAGAAACTGAGAATCTAATTTCTATAAACT
TAGTCATAAACTGGTATGTTTGGAACCACCTCAATTTCTATAAACCAGTTTCTTAAAAAC
TGGGTGTTTCCAAACAGGGCCTAAGTCACTGTAGTGCTTAGCCAGTTGTAACTTAAGAGA
GTTCTGTTAGGTTGCCTTGTGGCCACAATCATGTAGCAGAATCTGTCCAAAGAGCGTGTT
CATCCCATCCACAATCAGTAATCCGCACTCTACAGTTTGC