Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d048086_T001
CDS Infomation	cds chromosome:B73_RefGen_v4:9:149842814:149846476:-1 gene:Zm00001d048086 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:replication factor A homolog1 description:Replication protein A 70 kDa DNA-binding subunit B
Sequence	ATGGACGCTGCCAAGTCGGTGACGCCGGGCGCCGTGTCATACATCCTGGCGCACCCGTCT ACGGGCTCCGATGGCGCCGTGTCGGATCTCGTCGTTCAGGTCCTCGATCTCAAGTCCATC GGCATGGGCAGCCGGTTCAGTTTCACGGCAACCGATGGGAACGACAAAATCAAGGCGATG CTCCCCACTTACTTTGCGTCGGAGGTCCACTCCGGCAATCTGAAGAATTTCGGTCTCATC CGCATCCTCGACTACACTTGCAACTCCGTCAAAGGCAACGCTGACAAAGTCCTGATTGTC GTCAAATGCGAGACTGTGTGCGAAGCGCTCGATGCCGAGATCAACGGCGAGGCCAAGAAA GAGGATCCTCCAATTGTGCTGAAGCCTAAAGACGAAGGCTCAGTCGTGGCTGAGGAAACA AATTCTCCCCCACTCGTGATGAAGCCTAAGCAAGAGGTGAAGTCCGCGTCCCAGATCGTG ACTGAGCAGCGTGGAAATGCTGCTCCTGCCACGCGCCTTTCCATGACAAGGAGGGTCCAT CCCTTGATCACTCTGAACCCCTACCAGGGTAACTGGGTCATTAAGGTGCGGGTCACGAGC AAAGGCAATCTCAGAACCTACAGGAATGCTCGTGGAGAAGGCTGCGTCTTCAACGTAGAA CTTACTGATGAGGATGGCACCCAGATCCAGGCCACCATGTTTAACGAGGCTGCAAAGAAG TTCTATCCAATTTTTGAGCTGGGAAAGGTCTATTATGTCTCAAAAGGATCTCTTAGAATT GCCAACAAGCAGTTCAAGACAGTCAAAAATGACTATGAGTTGTCACTAAACGAGAATGCT ATTGTTGAAGAAGCAGAGGGGGAGACTTTCCTTCCACCAGTGCAATACAACCTTGTCAAG ATTGATCAGCTAGGACCATACGTCGGTGGCAGGGAGCTTGTAGATATTGTTGGTGTGGTT CAGAGCGTATCTCCCACACTCAGTGTTAGGAGAAAGATTGACAACGAGACAATACCGAAG CGTGATATTGTTGTAGCAGATGACTCTGGCAAAACTGTTACTATTTCTCTCTGGAATGAT CTTGCTACTACGACTGGCCAAGAGCTTTTGGACATGGTTGACAGTTCGCCTGTTGTTGCG ATAAAGAGCCTAAAAGTATCTGACTTCCAAGGCGTATCTCTTTCAACTATTGGCAGAAGT ACTCTCGAGATTAATCCTGACCTGCCTGAGGCTAAGAATCTGAAGTCCTGGTATGACTCT GAAGGCAAAGATACTTCACTGGCACCAATCAGTGCAGAAGTGGGTGCCACACGCGCTGGT GGTTTCAAGTCCATGTATTCTGATAGAGTTTTTCTGTCTCACATCACCAGTGATCCTGCT ATGGGCCAGGAAAAGCCTGTTTTCTTCAGTCTGTACGCCATCATAAGCCACATCAAGCCT GATCAGAATATGTGGTACCGTGCTTGCACGACCTGTAACAAGAAGGTGACTGAAGCTTTT GGGTCTGGATACTGGTGCGAGGGGTGCCAAAAGAATTACTCTGAGTGCTCGCTGAGATAC ATCATGGTGATCAAGCTCTCCGATCCCACTGGCGAGGCTTGGGTGTCTGTGTTCAATGAG CATGCAGAGAAGATCATTGGCTGCAGCGCCGACGAGCTTGATCGGATCAGGAAAGAGGAG GGGGACGACAGCTACGTTCTCAAGCTCAAGGAAGCCACCTGGGTTCCTCACCTGTTCCGT GTCAGCGTCACGCAGCATGAATACATGAACGAGAAGAGGCAGAGAATCACCGTGAGGGGT GAAGCACCGGTCGACTTCGCAGCTGAGTCCAAGTACTTGCTTGAAGAGATCGCGAAGCTC ACCGCTTGCTAG

Peptide Sequence

PEP ID	Zm00001d048086_P001
PEP Infomation	pep chromosome:B73_RefGen_v4:9:149842814:149846476:-1 gene:Zm00001d048086 transcript:Zm00001d048086_T001 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:replication factor A homolog1 description:Replication protein A 70 kDa DNA-binding subunit B
Sequence	MDAAKSVTPGAVSYILAHPSTGSDGAVSDLVVQVLDLKSIGMGSRFSFTATDGNDKIKAM LPTYFASEVHSGNLKNFGLIRILDYTCNSVKGNADKVLIVVKCETVCEALDAEINGEAKK EDPPIVLKPKDEGSVVAEETNSPPLVMKPKQEVKSASQIVTEQRGNAAPATRLSMTRRVH PLITLNPYQGNWVIKVRVTSKGNLRTYRNARGEGCVFNVELTDEDGTQIQATMFNEAAKK FYPIFELGKVYYVSKGSLRIANKQFKTVKNDYELSLNENAIVEEAEGETFLPPVQYNLVK IDQLGPYVGGRELVDIVGVVQSVSPTLSVRRKIDNETIPKRDIVVADDSGKTVTISLWND LATTTGQELLDMVDSSPVVAIKSLKVSDFQGVSLSTIGRSTLEINPDLPEAKNLKSWYDS EGKDTSLAPISAEVGATRAGGFKSMYSDRVFLSHITSDPAMGQEKPVFFSLYAIISHIKP DQNMWYRACTTCNKKVTEAFGSGYWCEGCQKNYSECSLRYIMVIKLSDPTGEAWVSVFNE HAEKIIGCSADELDRIRKEEGDDSYVLKLKEATWVPHLFRVSVTQHEYMNEKRQRITVRG EAPVDFAAESKYLLEEIAKLTAC

Transcript Sequence

Transcript ID	Zm00001d048086_T001
Transcript Infomation	cdna chromosome:B73_RefGen_v4:9:149842814:149846476:-1 gene:Zm00001d048086 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:replication factor A homolog1 description:Replication protein A 70 kDa DNA-binding subunit B
Sequence	GAACCCCGCGGCGGCAAGGCTAAAAAACGCGCAAAACCTCGAGCGCCGCTCGCCTCCCGC CATTTCCTTCCCAAATCTACCTTATCATATTATAAGCGCGCGTAGCCTTGGCAGCTCGAC GCATCTTCGCCTCCGCTCAACGCTCGCCCACGCCCCCAGCCCCCAACCGATCCAAGAGAA ACCTTCTCGCCTCCGCGGGACGATTCGCCAGGGAGAGCAAAGGTAGCAGAGGCGCCATGG ACGCTGCCAAGTCGGTGACGCCGGGCGCCGTGTCATACATCCTGGCGCACCCGTCTACGG GCTCCGATGGCGCCGTGTCGGATCTCGTCGTTCAGGTCCTCGATCTCAAGTCCATCGGCA TGGGCAGCCGGTTCAGTTTCACGGCAACCGATGGGAACGACAAAATCAAGGCGATGCTCC CCACTTACTTTGCGTCGGAGGTCCACTCCGGCAATCTGAAGAATTTCGGTCTCATCCGCA TCCTCGACTACACTTGCAACTCCGTCAAAGGCAACGCTGACAAAGTCCTGATTGTCGTCA AATGCGAGACTGTGTGCGAAGCGCTCGATGCCGAGATCAACGGCGAGGCCAAGAAAGAGG ATCCTCCAATTGTGCTGAAGCCTAAAGACGAAGGCTCAGTCGTGGCTGAGGAAACAAATT CTCCCCCACTCGTGATGAAGCCTAAGCAAGAGGTGAAGTCCGCGTCCCAGATCGTGACTG AGCAGCGTGGAAATGCTGCTCCTGCCACGCGCCTTTCCATGACAAGGAGGGTCCATCCCT TGATCACTCTGAACCCCTACCAGGGTAACTGGGTCATTAAGGTGCGGGTCACGAGCAAAG GCAATCTCAGAACCTACAGGAATGCTCGTGGAGAAGGCTGCGTCTTCAACGTAGAACTTA CTGATGAGGATGGCACCCAGATCCAGGCCACCATGTTTAACGAGGCTGCAAAGAAGTTCT ATCCAATTTTTGAGCTGGGAAAGGTCTATTATGTCTCAAAAGGATCTCTTAGAATTGCCA ACAAGCAGTTCAAGACAGTCAAAAATGACTATGAGTTGTCACTAAACGAGAATGCTATTG TTGAAGAAGCAGAGGGGGAGACTTTCCTTCCACCAGTGCAATACAACCTTGTCAAGATTG ATCAGCTAGGACCATACGTCGGTGGCAGGGAGCTTGTAGATATTGTTGGTGTGGTTCAGA GCGTATCTCCCACACTCAGTGTTAGGAGAAAGATTGACAACGAGACAATACCGAAGCGTG ATATTGTTGTAGCAGATGACTCTGGCAAAACTGTTACTATTTCTCTCTGGAATGATCTTG CTACTACGACTGGCCAAGAGCTTTTGGACATGGTTGACAGTTCGCCTGTTGTTGCGATAA AGAGCCTAAAAGTATCTGACTTCCAAGGCGTATCTCTTTCAACTATTGGCAGAAGTACTC TCGAGATTAATCCTGACCTGCCTGAGGCTAAGAATCTGAAGTCCTGGTATGACTCTGAAG GCAAAGATACTTCACTGGCACCAATCAGTGCAGAAGTGGGTGCCACACGCGCTGGTGGTT TCAAGTCCATGTATTCTGATAGAGTTTTTCTGTCTCACATCACCAGTGATCCTGCTATGG GCCAGGAAAAGCCTGTTTTCTTCAGTCTGTACGCCATCATAAGCCACATCAAGCCTGATC AGAATATGTGGTACCGTGCTTGCACGACCTGTAACAAGAAGGTGACTGAAGCTTTTGGGT CTGGATACTGGTGCGAGGGGTGCCAAAAGAATTACTCTGAGTGCTCGCTGAGATACATCA TGGTGATCAAGCTCTCCGATCCCACTGGCGAGGCTTGGGTGTCTGTGTTCAATGAGCATG CAGAGAAGATCATTGGCTGCAGCGCCGACGAGCTTGATCGGATCAGGAAAGAGGAGGGGG ACGACAGCTACGTTCTCAAGCTCAAGGAAGCCACCTGGGTTCCTCACCTGTTCCGTGTCA GCGTCACGCAGCATGAATACATGAACGAGAAGAGGCAGAGAATCACCGTGAGGGGTGAAG CACCGGTCGACTTCGCAGCTGAGTCCAAGTACTTGCTTGAAGAGATCGCGAAGCTCACCG CTTGCTAGAAGACGCAGTCTTTCTGGTGGTTCTTGAAGGACTGGCCCCCGATGTCTCCCT CGCAGTTTTTCTTTTGAGCTCCAGTAACTTGATTACTGTTCTGTGTGTTGCTCTCACTGG GTTTTAGCACTTCTGTAAGGTATATGTAGATGCTAGATTACCTTGGTGTCAAGGAACAGA TGCTATGATAAGCCTTGCAAAATTGCAGTTCCAATTCCGTGTATCTGCAACTTTGAGCAA ATAGGAAAAGATTATGAGTACTGATTGATGATGTTAGGTCGCTGCAGCTAACAAGTGTTT GGTTTTTATGGACTACTGTTTAGTCCCTGTATTTTATTCTATTTTAGTATTTAAGGTTGT GTTTGGTTGCGTCGACTAGACGTGTTGTGCGTGTCCGATGAGTCTATTATTGAAGCACAG AATTGAGAATTGGAATAAGCTTTT