Plant GARDEN
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TOP > About the Species(Zea mays ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d047998_T004
CDS Infomation

cds chromosome:B73_RefGen_v4:9:147612543:147617340:-1 gene:Zm00001d047998 gene_biotype:protein_coding transcript_biotype:protein_coding description:Squalene monooxygenase

Sequence

ATGCGTCAGAAAGCTGCGTCTTTGCCCAATGTTCAATTAGAACAAGGAACTGTTACATCA
CTTCTCGAAGAAAATGGTACTGTTAAAGGTGTTCAATACAAAACCAAGTCAGGTGAAGAA
CTAAAAGCTTATGCGCCCTTGACGATTGTATGTGATGGCTGCTTTTCAAATCTACGGCGT
GCCCTTTGCTCTCCAAAAGTTGATGTTCCATCATGTTTTATTGGGCTGGTATTGGAGAAT
TGCCAACTTCCACATCCAAACCATGGCCATGTTATCTTGGCCAATCCTTCGCCAATACTA
TTTTACCCAATTAGCAGCACAGAGGTGCGCTGTTTGGTTGATGTCCCAGGTCAGAAGGTG
CCTTCCATAGCTAGCGGTGAAATGGCAAATTATCTCAAAACCGTCGTTGCACCCCAGATT
CCTCCAGAAATCTATGACTCTTTCATAGCGGCCATTGATAAGGGAAGCATAAGAACAATG
CCAAACAGGAGCATGCCAGCGGCTCCACTTCCTACCCCTGGCGCACTTCTGATGGGGGAT
GCCTTCAATATGAGACACCCTTTAACTGGTGGAGGAATGACTGTTGCATTATCCGACATC
GTTGTCCTACGTAATCTTCTCAAGCCTCTCCGCAATCTCCACGACGCATCTTCCCTGTGC
AAGTACCTCGAATCGTTCTATACGCTGCGGAAGCCGGTTGCCTCCACCATAAACACGTTG
GCCGGTGCTCTGTACAAGGTCTTCAGCGCCTCGCCTGATCAAGCTAGGAACGAGATGCGC
CAGGCCTGTTTTGATTACTTGAGCCTCGGAGGCGTCTTCTCGAATGGGCCTATTGCCTTA
CTCTCGGGTCTTAATCCTCGGCCACTGAGTTTAGTTGCACACTTCTTCGCTGTCGCTATC
TACGGTGTTGGTCGCTTGATGCTCCCTCTTCCTTCGCCTAAACGGATGTGGATTGGAGCC
AGGCTGATTTCTGGTGCATGCGGCATCATCCTCCCGATCATCAAAGCTGAAGGCGTGAGA
CAGATGTTCTTCCCTGCCACTGTGCCCGCATATTACCGGGCTGCGCCTACGGGAGAATAA

Peptide Sequence

PEP ID

Zm00001d047998_P004
PEP Infomation

pep chromosome:B73_RefGen_v4:9:147612543:147617340:-1 gene:Zm00001d047998 transcript:Zm00001d047998_T004 gene_biotype:protein_coding transcript_biotype:protein_coding description:Squalene monooxygenase

Sequence

MRQKAASLPNVQLEQGTVTSLLEENGTVKGVQYKTKSGEELKAYAPLTIVCDGCFSNLRR
ALCSPKVDVPSCFIGLVLENCQLPHPNHGHVILANPSPILFYPISSTEVRCLVDVPGQKV
PSIASGEMANYLKTVVAPQIPPEIYDSFIAAIDKGSIRTMPNRSMPAAPLPTPGALLMGD
AFNMRHPLTGGGMTVALSDIVVLRNLLKPLRNLHDASSLCKYLESFYTLRKPVASTINTL
AGALYKVFSASPDQARNEMRQACFDYLSLGGVFSNGPIALLSGLNPRPLSLVAHFFAVAI
YGVGRLMLPLPSPKRMWIGARLISGACGIILPIIKAEGVRQMFFPATVPAYYRAAPTGE

Transcript Sequence

Transcript ID

Zm00001d047998_T004
Transcript Infomation

cdna chromosome:B73_RefGen_v4:9:147612543:147617340:-1 gene:Zm00001d047998 gene_biotype:protein_coding transcript_biotype:protein_coding description:Squalene monooxygenase

Sequence

CGGAAGAATCTCGAAGTGACGGCGCGGGTCCCGACGTCGGGACGGACGTCATCATCGTCG
GCGCCGGAGTGGCTGGATCTGCGCTGGCGTACACGCTCGGAAAGGATGGCCGCCGGGTGC
ATGTCATCGAGAGGGATCTGACAGAACCTGACAGAATTGTGGGCGAGCTGTTGCAACCTG
GAGGTTACTTGAAATTAATTGAGTTAGGCCTCCAAGATTGTGTGGAAGAAATTGATGCCC
AACGTGTGCTTGGTTACGCATTATTCAAAGATGGAAGAAACACAAAGCTTGCTTATCCCT
TAGAGAAGTTCCATTCTGATGTTGCTGGTAGGAGCTTTCACAATGGGAGGTTTATACAGA
GGATGCGTCAGAAAGCTGCGTCTTTGCCCAATGTTCAATTAGAACAAGGAACTGTTACAT
CACTTCTCGAAGAAAATGGTACTGTTAAAGGTGTTCAATACAAAACCAAGTCAGGTGAAG
AACTAAAAGCTTATGCGCCCTTGACGATTGTATGTGATGGCTGCTTTTCAAATCTACGGC
GTGCCCTTTGCTCTCCAAAAGTTGATGTTCCATCATGTTTTATTGGGCTGGTATTGGAGA
ATTGCCAACTTCCACATCCAAACCATGGCCATGTTATCTTGGCCAATCCTTCGCCAATAC
TATTTTACCCAATTAGCAGCACAGAGGTGCGCTGTTTGGTTGATGTCCCAGGTCAGAAGG
TGCCTTCCATAGCTAGCGGTGAAATGGCAAATTATCTCAAAACCGTCGTTGCACCCCAGA
TTCCTCCAGAAATCTATGACTCTTTCATAGCGGCCATTGATAAGGGAAGCATAAGAACAA
TGCCAAACAGGAGCATGCCAGCGGCTCCACTTCCTACCCCTGGCGCACTTCTGATGGGGG
ATGCCTTCAATATGAGACACCCTTTAACTGGTGGAGGAATGACTGTTGCATTATCCGACA
TCGTTGTCCTACGTAATCTTCTCAAGCCTCTCCGCAATCTCCACGACGCATCTTCCCTGT
GCAAGTACCTCGAATCGTTCTATACGCTGCGGAAGCCGGTTGCCTCCACCATAAACACGT
TGGCCGGTGCTCTGTACAAGGTCTTCAGCGCCTCGCCTGATCAAGCTAGGAACGAGATGC
GCCAGGCCTGTTTTGATTACTTGAGCCTCGGAGGCGTCTTCTCGAATGGGCCTATTGCCT
TACTCTCGGGTCTTAATCCTCGGCCACTGAGTTTAGTTGCACACTTCTTCGCTGTCGCTA
TCTACGGTGTTGGTCGCTTGATGCTCCCTCTTCCTTCGCCTAAACGGATGTGGATTGGAG
CCAGGCTGATTTCTGGTGCATGCGGCATCATCCTCCCGATCATCAAAGCTGAAGGCGTGA
GACAGATGTTCTTCCCTGCCACTGTGCCCGCATATTACCGGGCTGCGCCTACGGGAGAAT
AAGTAAAGCGAGAACCGATTCCGGGCTGCTGCAGTGCTGCTGATCCCACCATGATCTGAT
GGCAACTGATGTGTCATGGATGGCATTTTTTTCCTGTGTTAGTGGTTGTTAGGTGGTTTG
TTGTGCTGCTGTCATTGGAATGAGGAACCTGTATAGTGTGCCCCTGGGTACTGGTCAAAG
TTGGGAAATATGTTGGGTCCTACCGTAGCCATGTCGATTACTGC