Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d047998_T002
CDS Infomation	cds chromosome:B73_RefGen_v4:9:147612472:147617315:-1 gene:Zm00001d047998 gene_biotype:protein_coding transcript_biotype:protein_coding description:Squalene monooxygenase
Sequence	ATGGCTGCTATGGCCGCCGCTGGCGGCGTCGGGCTCCACCTCATTGGCGCTGCCACGGCC ACGCTCATCGTGGCGGTCCTTGTTGCGGCCGTGCTGGGGCGCCGCCGCCGGGCCCGGGCC CGGGCCCAGGCGCCTCCGGTGGAAGGGAAACCCGCGCCGGAGGCAGGCTGCGCGGTCGGT GACGGCGCGGGTCCCGACGTCGGGACGGACGTCATCATCGTCGGCGCCGGAGTGGCTGGA TCTGCGCTGGCGTACACGCTCGGAAAGGATGGCCGCCGGGTGCATGTCATCGAGAGGGAT CTGACAGAACCTGACAGAATTGTGGGCGAGCTGTTGCAACCTGGAGGTTACTTGAAATTA ATTGAGTTAGGCCTCCAAGATTGTGTGGAAGAAATTGATGCCCAACGTGTGCTTGGTTAC GCATTATTCAAAGATGGAAGAAACACAAAGCTTGCTTATCCCTTAGAGAAGTTCCATTCT GATGTTGCTGGTAGGAGCTTTCACAATGGGAGGTTTATACAGAGGATGCGTCAGAAAGCT GCGTCTTTGCCCAATGTTCAATTAGAACAAGGAACTGTTACATCACTTCTCGAAGAAAAT GGTACTGTTAAAGGTGTTCAATACAAAACCAAGTCAGGTGAAGAACTAAAAGCTTATGCG CCCTTGACGATTGTATGTGATGGCTGCTTTTCAAATCTACGGCGTGCCCTTTGCTCTCCA AAAGTTGATGTTCCATCATGTTTTATTGGGCTGGTATTGGAGAATTGCCAACTTCCACAT CCAAACCATGGCCATGTTATCTTGGCCAATCCTTCGCCAATACTATTTTACCCAATTAGC AGCACAGAGGTGCGCTGTTTGGTTGATGTCCCAGGTCAGAAGGTGCCTTCCATAGCTAGC GGTGAAATGGCAAATTATCTCAAAACCGTCGTTGCACCCCAGATTCCTCCAGAAATCTAT GACTCTTTCATAGCGGCCATTGATAAGGGAAGCATAAGAACAATGCCAAACAGGAGCATG CCAGCGGCTCCACTTCCTACCCCTGGCGCACTTCTGATGGGGGATGCCTTCAATATGAGA CACCCTTTAACTGGTGGAGGAATGACTGTTGCATTATCCGACATCGTTGTCCTACGTAAT CTTCTCAAGCCTCTCCGCAATCTCCACGACGCATCTTCCCTGTGCAAGTACCTCGAATCG TTCTATACGCTGCGGAAGCCGGTTGCCTCCACCATAAACACGTTGGCCGGTGCTCTGTAC AAGGTCTTCAGCGCCTCGCCTGATCAAGCTAGGAACGAGATGCGCCAGGCCTGTTTTGAT TACTTGAGCCTCGGAGGCGTCTTCTCGAATGGGCCTATTGCCTTACTCTCGGGTCTTAAT CCTCGGCCACTGAGTTTAGTTGCACACTTCTTCGCTGTCGCTATCTACGGTGTTGGTCGC TTGATGCTCCCTCTTCCTTCGCCTAAACGGATGTGGATTGGAGCCAGGCTGATTTCTGGT GCATGCGGCATCATCCTCCCGATCATCAAAGCTGAAGGCGTGAGACAGATGTTCTTCCCT GCCACTGTGCCCGCATATTACCGGGCTGCGCCTACGGGAGAATAA

Peptide Sequence

PEP ID	Zm00001d047998_P002
PEP Infomation	pep chromosome:B73_RefGen_v4:9:147612472:147617315:-1 gene:Zm00001d047998 transcript:Zm00001d047998_T002 gene_biotype:protein_coding transcript_biotype:protein_coding description:Squalene monooxygenase
Sequence	MAAMAAAGGVGLHLIGAATATLIVAVLVAAVLGRRRRARARAQAPPVEGKPAPEAGCAVG DGAGPDVGTDVIIVGAGVAGSALAYTLGKDGRRVHVIERDLTEPDRIVGELLQPGGYLKL IELGLQDCVEEIDAQRVLGYALFKDGRNTKLAYPLEKFHSDVAGRSFHNGRFIQRMRQKA ASLPNVQLEQGTVTSLLEENGTVKGVQYKTKSGEELKAYAPLTIVCDGCFSNLRRALCSP KVDVPSCFIGLVLENCQLPHPNHGHVILANPSPILFYPISSTEVRCLVDVPGQKVPSIAS GEMANYLKTVVAPQIPPEIYDSFIAAIDKGSIRTMPNRSMPAAPLPTPGALLMGDAFNMR HPLTGGGMTVALSDIVVLRNLLKPLRNLHDASSLCKYLESFYTLRKPVASTINTLAGALY KVFSASPDQARNEMRQACFDYLSLGGVFSNGPIALLSGLNPRPLSLVAHFFAVAIYGVGR LMLPLPSPKRMWIGARLISGACGIILPIIKAEGVRQMFFPATVPAYYRAAPTGE

Transcript Sequence

Transcript ID	Zm00001d047998_T002
Transcript Infomation	cdna chromosome:B73_RefGen_v4:9:147612472:147617315:-1 gene:Zm00001d047998 gene_biotype:protein_coding transcript_biotype:protein_coding description:Squalene monooxygenase
Sequence	GTCCCATCGTTCCTCTCTCTCTGCCCCGCCTACGCCTCGCCCCAGACGCATCAAACCGCT CTCCTCTCCCTCCCTGCCCCCCTCGCAACCCTGAAGAAGCCCCCACACGCAAGGCCGCAA ACGCGCCGCGCACCGCAAGGTCCCAGGGAGCGACACGAGGCGGCCTCATTGCAGCATGGC TGCTATGGCCGCCGCTGGCGGCGTCGGGCTCCACCTCATTGGCGCTGCCACGGCCACGCT CATCGTGGCGGTCCTTGTTGCGGCCGTGCTGGGGCGCCGCCGCCGGGCCCGGGCCCGGGC CCAGGCGCCTCCGGTGGAAGGGAAACCCGCGCCGGAGGCAGGCTGCGCGGTCGGTGACGG CGCGGGTCCCGACGTCGGGACGGACGTCATCATCGTCGGCGCCGGAGTGGCTGGATCTGC GCTGGCGTACACGCTCGGAAAGGATGGCCGCCGGGTGCATGTCATCGAGAGGGATCTGAC AGAACCTGACAGAATTGTGGGCGAGCTGTTGCAACCTGGAGGTTACTTGAAATTAATTGA GTTAGGCCTCCAAGATTGTGTGGAAGAAATTGATGCCCAACGTGTGCTTGGTTACGCATT ATTCAAAGATGGAAGAAACACAAAGCTTGCTTATCCCTTAGAGAAGTTCCATTCTGATGT TGCTGGTAGGAGCTTTCACAATGGGAGGTTTATACAGAGGATGCGTCAGAAAGCTGCGTC TTTGCCCAATGTTCAATTAGAACAAGGAACTGTTACATCACTTCTCGAAGAAAATGGTAC TGTTAAAGGTGTTCAATACAAAACCAAGTCAGGTGAAGAACTAAAAGCTTATGCGCCCTT GACGATTGTATGTGATGGCTGCTTTTCAAATCTACGGCGTGCCCTTTGCTCTCCAAAAGT TGATGTTCCATCATGTTTTATTGGGCTGGTATTGGAGAATTGCCAACTTCCACATCCAAA CCATGGCCATGTTATCTTGGCCAATCCTTCGCCAATACTATTTTACCCAATTAGCAGCAC AGAGGTGCGCTGTTTGGTTGATGTCCCAGGTCAGAAGGTGCCTTCCATAGCTAGCGGTGA AATGGCAAATTATCTCAAAACCGTCGTTGCACCCCAGATTCCTCCAGAAATCTATGACTC TTTCATAGCGGCCATTGATAAGGGAAGCATAAGAACAATGCCAAACAGGAGCATGCCAGC GGCTCCACTTCCTACCCCTGGCGCACTTCTGATGGGGGATGCCTTCAATATGAGACACCC TTTAACTGGTGGAGGAATGACTGTTGCATTATCCGACATCGTTGTCCTACGTAATCTTCT CAAGCCTCTCCGCAATCTCCACGACGCATCTTCCCTGTGCAAGTACCTCGAATCGTTCTA TACGCTGCGGAAGCCGGTTGCCTCCACCATAAACACGTTGGCCGGTGCTCTGTACAAGGT CTTCAGCGCCTCGCCTGATCAAGCTAGGAACGAGATGCGCCAGGCCTGTTTTGATTACTT GAGCCTCGGAGGCGTCTTCTCGAATGGGCCTATTGCCTTACTCTCGGGTCTTAATCCTCG GCCACTGAGTTTAGTTGCACACTTCTTCGCTGTCGCTATCTACGGTGTTGGTCGCTTGAT GCTCCCTCTTCCTTCGCCTAAACGGATGTGGATTGGAGCCAGGCTGATTTCTGGTGCATG CGGCATCATCCTCCCGATCATCAAAGCTGAAGGCGTGAGACAGATGTTCTTCCCTGCCAC TGTGCCCGCATATTACCGGGCTGCGCCTACGGGAGAATAAGTAAAGCGAGAACCGATTCC GGGCTGCTGCAGTGCTGCTGATCCCACCATGATCTGATGGCAACTGATGTGTCATGGATG GCATTTTTTTCCTGTGTTAGTGGTTGTTAGGTGGTTTGTTGTGCTGCTGTCATTGGAATG AGGAACCTGTATAGTGTGCCCCTGGGTACTGGTCAAAGTTGGGAAATATGTTGGGTCCTA CCGTAGCCATGTCGATTACTGCCAAGCTGTATATGATTCTGTCGAACTAGTGAAACCTCT CCCCATCTTTAACGCGTATCAATCTTGTTTGCT