Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d047971_T002
CDS Infomation

cds chromosome:B73_RefGen_v4:9:146688777:146694721:1 gene:Zm00001d047971 gene_biotype:protein_coding transcript_biotype:protein_coding description:2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Sequence

ATGTCCAGTACCACCACCTCGCCTCCGCCGCCGGCCGCCGGGGACCATCCCCGCGTTCTG
CTCCGAGGTTTCCTCTCCCGTGAGACATGCAAGGAGCTGGAGTTCGTGCACCGGAGCTGC
GGCGCAGCGGGGTACCGCCCCTCGGTGATATCGACATCTCTGCCGCACCTGGCGGCCACC
GGCTGCGGCCACCTCCTGCTCCCGTTCGTGCCCGTCCGCGAGCGCCTCCGCGACGCTGTG
GAGTCCTTCTTCGATTGCCACTTCGATCTCTTCATCGAGTTCACCGGGCTTATCAGTTGG
TGCAAGGGAGCTTCTATTGGATGGCACAGTGATGACAACAAGCCTTATCTTAGGCAAAGG
GCATTCACAGCAGTTTGCTACTTGAACAATCATGGAGAGGACTATAAGGGTGGAATTTTG
CAGTTTCAGGATGGTGATCCTTCCTGTATTGTTCCAGTTGCTGGTGTAAGCAAATCTAAT
TTTACTTTGCATCCATGTGGTTTCAAAATACTTCTTATGAAGCACACATTTGTTGTTAGT
AAAATGTTCTGGGTAATTTTGGTAAGTTTTATGAGAAACATTTTTGTCCAGGATGTTGTC
ATATACACGGCTGATACTCGTAATGTTCATTGTGTAAATGAGGTATGTCCTGTTGTAACT
GAAGGGGAAAGGTTGACCCTGACTCTTTGGTTCACTAGAGACCGTGCTTATGATGAGGAT
CCAAAACTTCTTAACTTTCTGTCTCAGACATCATTGAGCTGTGAACCAACTGAGCAAAAT
TCTTATATTCCTGTACCAGCTTCTGATAACATGTATCGCTTTTCTTGTGATCAGTCTGGT
TTTGACATACGATGTGCTAGAGTGCATATTCTGGGGTTTAGTTTTCACTCAAGTAGTGGT
GAATGCAATATATCTGCGTCACCAGCTGAAGATGACCCAATAGAGTTGCTTGGAAAGCAA
CTGCGGCTCGGGAGGGGAGATGATGTCTTTGAGAAAATATTTTCTAACAGCTTACATGCT
CTTCAGGTGGTGCAATTCTACTACTGGAAAAAACATGAGCTGGCAGCAAGGAGGGAACAA
AGTGTTGTTAGTTCAGGAACAGTCTGCTGTCCAGTTACACATCATTCAAAAGGAACAGAA
TTACCATTACCATGCAATCACGCACTTGCACAAACTATATTTGGATCATATAATACTGAG
GAGATTGTCCAGTGGAATGATTTTGCATTAGCTGTTGCTATGTGGGAAAAATATTCAGAA
GAGTTAAAGAAACAGTTGTTGACATTTTTGCCATATTGGTTGTCCAATGAAACCATTTAT
GTTGTTGATACCTCTGAGCTGCAGAGAGCCGAACCAATCTAA

Peptide Sequence

PEP ID

Zm00001d047971_P002
PEP Infomation

pep chromosome:B73_RefGen_v4:9:146688777:146694721:1 gene:Zm00001d047971 transcript:Zm00001d047971_T002 gene_biotype:protein_coding transcript_biotype:protein_coding description:2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Sequence

MSSTTTSPPPPAAGDHPRVLLRGFLSRETCKELEFVHRSCGAAGYRPSVISTSLPHLAAT
GCGHLLLPFVPVRERLRDAVESFFDCHFDLFIEFTGLISWCKGASIGWHSDDNKPYLRQR
AFTAVCYLNNHGEDYKGGILQFQDGDPSCIVPVAGVSKSNFTLHPCGFKILLMKHTFVVS
KMFWVILVSFMRNIFVQDVVIYTADTRNVHCVNEVCPVVTEGERLTLTLWFTRDRAYDED
PKLLNFLSQTSLSCEPTEQNSYIPVPASDNMYRFSCDQSGFDIRCARVHILGFSFHSSSG
ECNISASPAEDDPIELLGKQLRLGRGDDVFEKIFSNSLHALQVVQFYYWKKHELAARREQ
SVVSSGTVCCPVTHHSKGTELPLPCNHALAQTIFGSYNTEEIVQWNDFALAVAMWEKYSE
ELKKQLLTFLPYWLSNETIYVVDTSELQRAEPI

Transcript Sequence

Transcript ID

Zm00001d047971_T002
Transcript Infomation

cdna chromosome:B73_RefGen_v4:9:146688777:146694721:1 gene:Zm00001d047971 gene_biotype:protein_coding transcript_biotype:protein_coding description:2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Sequence

ACAGTACTCCGTACAACACTGTGACCAAGGAATCGGGCTTTAGGGATCCCTATGTCCAGT
ACCACCACCTCGCCTCCGCCGCCGGCCGCCGGGGACCATCCCCGCGTTCTGCTCCGAGGT
TTCCTCTCCCGTGAGACATGCAAGGAGCTGGAGTTCGTGCACCGGAGCTGCGGCGCAGCG
GGGTACCGCCCCTCGGTGATATCGACATCTCTGCCGCACCTGGCGGCCACCGGCTGCGGC
CACCTCCTGCTCCCGTTCGTGCCCGTCCGCGAGCGCCTCCGCGACGCTGTGGAGTCCTTC
TTCGATTGCCACTTCGATCTCTTCATCGAGTTCACCGGGCTTATCAGTTGGTGCAAGGGA
GCTTCTATTGGATGGCACAGTGATGACAACAAGCCTTATCTTAGGCAAAGGGCATTCACA
GCAGTTTGCTACTTGAACAATCATGGAGAGGACTATAAGGGTGGAATTTTGCAGTTTCAG
GATGGTGATCCTTCCTGTATTGTTCCAGTTGCTGGTGTAAGCAAATCTAATTTTACTTTG
CATCCATGTGGTTTCAAAATACTTCTTATGAAGCACACATTTGTTGTTAGTAAAATGTTC
TGGGTAATTTTGGTAAGTTTTATGAGAAACATTTTTGTCCAGGATGTTGTCATATACACG
GCTGATACTCGTAATGTTCATTGTGTAAATGAGGTATGTCCTGTTGTAACTGAAGGGGAA
AGGTTGACCCTGACTCTTTGGTTCACTAGAGACCGTGCTTATGATGAGGATCCAAAACTT
CTTAACTTTCTGTCTCAGACATCATTGAGCTGTGAACCAACTGAGCAAAATTCTTATATT
CCTGTACCAGCTTCTGATAACATGTATCGCTTTTCTTGTGATCAGTCTGGTTTTGACATA
CGATGTGCTAGAGTGCATATTCTGGGGTTTAGTTTTCACTCAAGTAGTGGTGAATGCAAT
ATATCTGCGTCACCAGCTGAAGATGACCCAATAGAGTTGCTTGGAAAGCAACTGCGGCTC
GGGAGGGGAGATGATGTCTTTGAGAAAATATTTTCTAACAGCTTACATGCTCTTCAGGTG
GTGCAATTCTACTACTGGAAAAAACATGAGCTGGCAGCAAGGAGGGAACAAAGTGTTGTT
AGTTCAGGAACAGTCTGCTGTCCAGTTACACATCATTCAAAAGGAACAGAATTACCATTA
CCATGCAATCACGCACTTGCACAAACTATATTTGGATCATATAATACTGAGGAGATTGTC
CAGTGGAATGATTTTGCATTAGCTGTTGCTATGTGGGAAAAATATTCAGAAGAGTTAAAG
AAACAGTTGTTGACATTTTTGCCATATTGGTTGTCCAATGAAACCATTTATGTTGTTGAT
ACCTCTGAGCTGCAGAGAGCCGAACCAATCTAACTCTCCAATGGTGATTTGGACTGCCTC
ATTCTTATGCGACATAGCTGTGGCGTAGATATGTTTCTCTCAAGCTCCACTGGGAATACT
GGTACAATATATTTCCATCAGCATCGTAGAAGGTGAATTCAGCTTGGTCCTGGTATAGCT
GGATGGACATGACCCTTGCCCATCATAAAAGAACTTGAGCTTGTTTTCATTTGGCTGGAA
GAATCCTCTCCATGCTCTTGAACGGTCTCTGCTTGTGAAGTATTGAATTGGACTCTAAAG
GCGGAGCATGTAAGCTTATATGGGCAGTGATCATGCCCATTGATGTAGAAGAAGTCGATG
CTGTTGATCTGGAATGGACTAAACTTATTATCAAAAGATGCTTTTTTTTTTGTATTTTGG
AGGCTAATATTGTGGCTGCTTCCGAGCAACCTTGGGCCTTGTTGTTTGGTTAGAAGAGGA
TTGAGGGGGATTTGTTACTTCGCGCTGTTAAAAAACATTATACTTTGCGCTCTACTGAAA
GGGCAGCAAACAAAGACGTCGTGTATGCCATATGCTCCTTGCCTGTGAAAAAAGAAAATA
AAGTTTGTACGGTCCAGTGTTTAG