Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d047941_T003
CDS Infomation

cds chromosome:B73_RefGen_v4:9:145890888:145895296:1 gene:Zm00001d047941 gene_biotype:protein_coding transcript_biotype:protein_coding description:26S proteasome non-ATPase regulatory subunit 4

Sequence

ATGGTGCTCGAGGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGAC
TACGCCCCGTCGCGGTTCCAGGCGCAGGCCGATGCCGTCAACCTCATATGCGGTGCCAAG
ACCCAGTCGAACCCGGAGAACACAGTAGGCGTGATGACGATGGCCGGGAAGGGCGTCCGC
GTGCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACGGGTTGGAA
GTTGGTGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCTCAGCTTGCGCTAAAGCAT
CGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCATTCATCGGAAGTCCTGTGAAGTAC
GACAAGAAAATTTTGGAGACAATCGGGAAGAAGCTGAAAAAGAACAATGTTGCTCTTGAC
ATTGTTGACTTTGGTGAATCTGATGATGAAAAGCCTGAGAAACTGGAAGCATTGATCGCT
GCTGTTAACAGCAGTGATAGCAGTCACATTGTTCATGTCCCTCCTGGTGAAAATGCTCTC
TCTGATGTCCTCCTAAGCACTCCTATATTTACTGGTGAAGAAGGTGGAAGTGGTTTTGCT
GCTTCCGCAGCAGCTGCCGTAGCTACTGGAGCATCTGGATTTGAATTTGGTGTGGACCCA
AATGTAGATCCAGAGTTGGCACTCGCCCTGCGGTTGTCTATGGAAGAAGAACGAGCAAGG
CAAGAGGCTATTGCAAAAAAGGCTGCAGAAGATACATCTAATACCGAAAATATCAATGCC
TCAAGCTCAAACAGCGATTCTGTTATGGCTGAAGCAGAACTTGCCTCAAATGCTGCTGCT
GGTGACAAGCAAGAACAGCCAAAGGATGATGACGATCTACTACAGCAGGCACTTGCAATG
TCAATGGAGGGCGGTGCTTCAGGATCTGCAGCTGTGACTGACTCCGCTATGGCAGAAGCT
GGTGCAGTTGACCCTGACTTAGCGTTGGCTCTTCAAATGTCTGTCCAGGATGCAAACATG
TCCAGTGACACTGATATGAGTAAGGTGTTTGAAGACAGAACGTTTGTGTCATCTATCCTT
AATTCGGTATGTATTATTCTTAAACTAATGGCATACAGGTGTAAAATAACAGCTTCCTGG
TGTTGA

Peptide Sequence

PEP ID

Zm00001d047941_P003
PEP Infomation

pep chromosome:B73_RefGen_v4:9:145890888:145895296:1 gene:Zm00001d047941 transcript:Zm00001d047941_T003 gene_biotype:protein_coding transcript_biotype:protein_coding description:26S proteasome non-ATPase regulatory subunit 4

Sequence

MVLEATMICIDNSEWMRNGDYAPSRFQAQADAVNLICGAKTQSNPENTVGVMTMAGKGVR
VLVTPTSDLGKILACMHGLEVGAEANLAAAIQVAQLALKHRQNKRQQQRIIAFIGSPVKY
DKKILETIGKKLKKNNVALDIVDFGESDDEKPEKLEALIAAVNSSDSSHIVHVPPGENAL
SDVLLSTPIFTGEEGGSGFAASAAAAVATGASGFEFGVDPNVDPELALALRLSMEEERAR
QEAIAKKAAEDTSNTENINASSSNSDSVMAEAELASNAAAGDKQEQPKDDDDLLQQALAM
SMEGGASGSAAVTDSAMAEAGAVDPDLALALQMSVQDANMSSDTDMSKVFEDRTFVSSIL
NSVCIILKLMAYRCKITASWC

Transcript Sequence

Transcript ID

Zm00001d047941_T003
Transcript Infomation

cdna chromosome:B73_RefGen_v4:9:145890888:145895296:1 gene:Zm00001d047941 gene_biotype:protein_coding transcript_biotype:protein_coding description:26S proteasome non-ATPase regulatory subunit 4

Sequence

AGCGCAAGCCCTTCCCTGACAGCGGCGGCGACATGGTGCTCGAGGCGACGATGATCTGCA
TAGACAACTCGGAGTGGATGCGGAACGGCGACTACGCCCCGTCGCGGTTCCAGGCGCAGG
CCGATGCCGTCAACCTCATATGCGGTGCCAAGACCCAGTCGAACCCGGAGAACACAGTAG
GCGTGATGACGATGGCCGGGAAGGGCGTCCGCGTGCTTGTCACTCCCACCAGCGACCTCG
GGAAGATTCTCGCCTGTATGCACGGGTTGGAAGTTGGTGCTGAGGCAAACTTGGCTGCGG
CAATCCAGGTTGCTCAGCTTGCGCTAAAGCATCGCCAGAACAAGAGGCAGCAGCAGAGGA
TTATAGCATTCATCGGAAGTCCTGTGAAGTACGACAAGAAAATTTTGGAGACAATCGGGA
AGAAGCTGAAAAAGAACAATGTTGCTCTTGACATTGTTGACTTTGGTGAATCTGATGATG
AAAAGCCTGAGAAACTGGAAGCATTGATCGCTGCTGTTAACAGCAGTGATAGCAGTCACA
TTGTTCATGTCCCTCCTGGTGAAAATGCTCTCTCTGATGTCCTCCTAAGCACTCCTATAT
TTACTGGTGAAGAAGGTGGAAGTGGTTTTGCTGCTTCCGCAGCAGCTGCCGTAGCTACTG
GAGCATCTGGATTTGAATTTGGTGTGGACCCAAATGTAGATCCAGAGTTGGCACTCGCCC
TGCGGTTGTCTATGGAAGAAGAACGAGCAAGGCAAGAGGCTATTGCAAAAAAGGCTGCAG
AAGATACATCTAATACCGAAAATATCAATGCCTCAAGCTCAAACAGCGATTCTGTTATGG
CTGAAGCAGAACTTGCCTCAAATGCTGCTGCTGGTGACAAGCAAGAACAGCCAAAGGATG
ATGACGATCTACTACAGCAGGCACTTGCAATGTCAATGGAGGGCGGTGCTTCAGGATCTG
CAGCTGTGACTGACTCCGCTATGGCAGAAGCTGGTGCAGTTGACCCTGACTTAGCGTTGG
CTCTTCAAATGTCTGTCCAGGATGCAAACATGTCCAGTGACACTGATATGAGTAAGGTGT
TTGAAGACAGAACGTTTGTGTCATCTATCCTTAATTCGGTATGTATTATTCTTAAACTAA
TGGCATACAGGTGTAAAATAACAGCTTCCTGGTGTTGATCCCAATGATCCATCTGTTAAA
GATTTGCTGGCATCATTGCACAGCCAGGGAGAGTGAAGGTCTCAGTATTGTGATGCAATG
AAATTCATGTTGCCTCTAGACTATAGCATTGTTCAGCTTCACCTTGACTAAATAAGAATT
AATATATTATCTGTCACCAAATCTTCATGCAAATACACAGTTAGTATATGCAAGCAATGA
CTATGCACAGCTACAAAAAAACCATTGCAAGATCTAATAATTAGATGCTAATAATTAGCT
CCTTGGATCCAAACAGGTCTAGCTAATTGTTATCTGAATACCCAACTAACAACTATTTCA
CTAGTTGGATCAAACTAGCTAATATTAGCTATGAACTATTATCTAGCTAACTATTAGCAG
CTAATGGATCCAAACAGGGCATAAGGCCCACGTTTAGCCCCAGCTCTGAGCTCCACCTTA
TCTGGACTTTGTATGCTCCAATGAAGGATCTTGATATGCTGTCTTCTATGTAGAATAGAA
AGAAAACAACTCAACTAAACAACCCACAGCTCCAGGATCCACCGATTTCTGAGCTCTGCC
CCTGCTGTTTAGGATAGCATATGGAGTTCTTTATGTTCCACAAGCACAATTGATCTTATG
GAATGGAAATAGTAGAACATTATCTGGTGAGAGCACACAAATACCTTATACAAAGCAGGT
ATTGAGTCAAATTGTTGTGTACCCATTTGTGGTCTGGATACACTGGTTTGGTGAAAATGA
AATATGCCCAAAGCAACAAAACCCAGTTCACATGAACTGCTATCCTGTATTTACGAATCT
TGACTAGTCTAGTAATGTATGTATGTGGAAATATGAAGGTTTCTTTATTTCTCTTCTTAA
ACAGCAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGATGTAG
CCATGTTCATGCTTCCATG