Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d047880_T002
CDS Infomation

cds chromosome:B73_RefGen_v4:9:144119119:144123069:1 gene:Zm00001d047880 gene_biotype:protein_coding transcript_biotype:protein_coding description:Putative metallophosphoesterase

Sequence

ATGAATGTTGGCATTCGTTTTCCTGCAAATCTTTTTGGCCATTCTACTGATAAAAGGATA
GAAGCGGTAAATTCAGAGCTTCAATACTGGACCAATCATTCCAATGTTCCAGTTACCAAA
GTAGTTTTTGGACATTTCCCTATGTCATTCACTGCATCATCTGAAAAAGGACAGCGATAT
GAAAGTGTGCTTGCAGGGCAGTCTATTTCAGCATACCTATGTGGTCATCTCCATGCAAAA
GTTAGTAAGCAGCTTTGGAGGTATCATGAAATCAGAACAACAGAAGATCACAAGTCAAGC
TTTTGGGAATGGGAACTTGGAGACTGGAAGGACTCCAGATTGATGAGGATTTTAGCAATA
GATGGTGGTGCAGTCTCATTCATAGACCACACATTGAAACATGCACTCCAAACTTCCATC
TTGATCACATATCCAACAGATTCAAGAAGTATGAATATGTTGGATTCAGAAAAGTGGTCG
ATGAGAAATGATATAAATGTCCTTATTTTCTCTCATCAATTTATAAGTAATGTGAGTGCT
AGAATCTTTGACTCTCATTGTGAGTTTAAGATTGTCGAGGAGATACCTCTGCAGCTTGTT
ACCAGTACTTCTGCTCACAGACCTTTGTTCCATGCCAAATGGAATGCTGAAAATTACAGA
AGTTCATCCGCCACTCGCTACTGGTTGCAGGTGTTTGTTCTTGATTCTCATGGTGTAAAA
ATTTCAAGTGAGCAGAGACCATTTTCAGTTGAGGGTAAGATGGCAATTCCCACAAGTCCA
TGGACCAACTATCTGCTCTTTGAAGTCCAGTGGGAAGGCATGTATCAAGTTCTTCTGTGG
AGTAATTTGGCCTTCACCATTGTATTGTTGTTCATCCCCAAACTATTGTATCACTTTGTT
AGGAGAAGTTCATCATATCAAAGGTGGGCTGTGTCAATTCCGTCCTCCTCTATCCAGCAG
AGAAAACCTTACTTTTGGTTGGTTTGGTTTTTAATGGAGGGCACAAGGAGTAAACCTTTC
TGGTTTTCTATGGTAACATATGTGCTCTGGCTAATTGAAATGCCATGGTTTTGGGGCCAT
GCAACGTCTGAAAATGGAGAAATCGCTCAAATGTACTTATCTGGATGGAGCGTGCCAATT
CATGATGGGGGCTTGACGGGCAACAAACTGAGCAACCCAGATGTGCTTGTCATCACACTA
CCGTTCCTCTATCTGGTGCTTGTCCCAGTAATAGTCCTTACATATGGTCTGTTTGCAGAA
AAGGCTACTGTGTTTTTGCAGCACAGAAGAAGAGTAGTATACTCTCTTGACTCAACAAAT
GTGCATGCCGAGTCACCAAGATTGCTGCCAGTTGCTCCAAGGGCTTCACTAATGAAATTC
GCCGACAAGATGGTGTCCATGGTGATCCAATTTTGTGGTAGCTGGACAAGAAGGGCTCTT
CTACTTGCATGCTTGATCACCGCAGCAATACATTTGAAGCTCTGTTCCAAACTAATGTCA
GCATATGGAACTGTACCAGTAGCATTGTCACCCCCATTGACATGGATACCATTGTTGCTA
TTAGGTGGTGCTGCCTATTGTACAGTTCTCCATGCAGATTAG

Peptide Sequence

PEP ID

Zm00001d047880_P002
PEP Infomation

pep chromosome:B73_RefGen_v4:9:144119119:144123069:1 gene:Zm00001d047880 transcript:Zm00001d047880_T002 gene_biotype:protein_coding transcript_biotype:protein_coding description:Putative metallophosphoesterase

Sequence

MNVGIRFPANLFGHSTDKRIEAVNSELQYWTNHSNVPVTKVVFGHFPMSFTASSEKGQRY
ESVLAGQSISAYLCGHLHAKVSKQLWRYHEIRTTEDHKSSFWEWELGDWKDSRLMRILAI
DGGAVSFIDHTLKHALQTSILITYPTDSRSMNMLDSEKWSMRNDINVLIFSHQFISNVSA
RIFDSHCEFKIVEEIPLQLVTSTSAHRPLFHAKWNAENYRSSSATRYWLQVFVLDSHGVK
ISSEQRPFSVEGKMAIPTSPWTNYLLFEVQWEGMYQVLLWSNLAFTIVLLFIPKLLYHFV
RRSSSYQRWAVSIPSSSIQQRKPYFWLVWFLMEGTRSKPFWFSMVTYVLWLIEMPWFWGH
ATSENGEIAQMYLSGWSVPIHDGGLTGNKLSNPDVLVITLPFLYLVLVPVIVLTYGLFAE
KATVFLQHRRRVVYSLDSTNVHAESPRLLPVAPRASLMKFADKMVSMVIQFCGSWTRRAL
LLACLITAAIHLKLCSKLMSAYGTVPVALSPPLTWIPLLLLGGAAYCTVLHAD

Transcript Sequence

Transcript ID

Zm00001d047880_T002
Transcript Infomation

cdna chromosome:B73_RefGen_v4:9:144119119:144123069:1 gene:Zm00001d047880 gene_biotype:protein_coding transcript_biotype:protein_coding description:Putative metallophosphoesterase

Sequence

ACCGTCACTCGGTCGGCTCCTTGCCGATTCCCCCACCCCCGCAAGCCGCGGCGATGGCCT
ACGATCTCCCGTTCACTCTCTTCGTACTCCTCTTCCTCGTCCTCCTACAGACGCCGAGCT
CCTCATGGCGACCGGCTGACGACGACGACGCGTCGGTCTCGAGGTCGGCTTTCCCCATGG
AGGGTGACGTCGCCTGGGTGGTGCAGGTCAGCGACCTCCATATCAGCACCTACAACCCTG
AGCGTGCCGCCGAACTCGCGCTCCTCGGCACCGCGCTGCGCGCAATCCGGCCTCACCTTC
TCCTCGTCACCGGTGACATCACCGGTGAGCCCTGTGCTCTCATATGTCTGGATCTGAAAT
TTTCGGTGTCGGATTGCAACTTGTATTCAAACTTGTCCCGTGCCCATGGATATTTATGAG
TCGATATTTATTTATTTGAAATGCTGTGCCCATGGATTATATTACTACGAAAATACTGGG
AGCAGTCAGCATATCAAGTACATGGTGGAAAATTGACGAGAAGTACTTCGAACAGGCCAA
ATTGGCATAGCACCAGAAACCTACTCTATCGGTTAGGCTTGTTCGTTTTGCTCATGTGAA
TTGGGTGGGATTGAGTCAGATACTCAGATTTAAATCATATCATGTTTTTTTTCTAATCTC
ACAAATCCACATGGGATAGGAATAACCGAATAAGGCCTTGTATGTTTTGACTTACCATGT
GATATAATTTGAAACGAAGAGAATCTAAGACTAGTACAAAATATAAACTTTGAGATACTC
GAATTATGACTGCTATGGCTTTTAAGATAGCTCAGTAGCCCACTCCAATTCGTTTGCTGC
GAAGTTGTAATGACCATCTAAGGGCCTGTTTGGAATAACCCAGTTTTAAGAAACTAGTTT
ATAAAATCTGAGGTGGTTCCAAACATACCGGTTTATAGAAATTGGATTCCTAGTTTCTTA
AAACCAAGAAGCTAGCCTCTCTTAGCTAAAACTAGTTTATGAAAACTGAGATAGTTCCAA
ATACTATAAATCAGTTTTTTTTACAAATCAGTTTCTAGAAGTTAGAGATACAAACTTAAA
AACTAGGTTGCTTCTAAACAGGGCCTAAACCATTCTGTTTTTATTTGGCATGCAAACCAT
TACTGTTCCATACAAGGAATCAAGGCAAGGCATTTGTACATCGAAACAAAATTTCGTTTT
GATGACAAATGGAATATTGAAAATGATGCTGCATTGTTGTCATATTGAAAAGTATCTCTG
GATAACACTTTCTGTGTCCCGACATAAGAGAACTTTTTGGAGCACCCTGTCCATGCAAGT
ATGGTAGATAGAAAGGCGTTGCAACAAAAATAAGGCAACATCATAAGCGCACACATGATT
ATTGTGATCGACCTGTATCGTTTTCCGTGTGGTTTTATGGACCTTTTTATTATATATTTT
AACTTCACGTTTTCATTGTCATTTCAATAAGATGCTAAGAATCAGCAAAGAACTAGTTCA
AGGCAGGATGAATACGAATGGATTACCTACAAGAAAACTATTGATGCAATTGTTGGAAGC
GGTGGCATTGATAAGAGCAGGATATTTGATATTAGAGGCAATCATGATACATATGGAGTG
CCTTATAGAGGAGGAAAATTGGACTTCTTCTCAACTTACAGCGTTAACTCACAGTTTAAG
CGATTAAGCACCATCAGTAGTATATTGCTTCAGGCACTGTAGGGAGATAGAAGCTACCAA
TTTCTGGGTATTGATGATACCATGAATGTTGGCATTCGTTTTCCTGCAAATCTTTTTGGC
CATTCTACTGATAAAAGGATAGAAGCGGTAAATTCAGAGCTTCAATACTGGACCAATCAT
TCCAATGTTCCAGTTACCAAAGTAGTTTTTGGACATTTCCCTATGTCATTCACTGCATCA
TCTGAAAAAGGACAGCGATATGAAAGTGTGCTTGCAGGGCAGTCTATTTCAGCATACCTA
TGTGGTCATCTCCATGCAAAAGTTAGTAAGCAGCTTTGGAGGTATCATGAAATCAGAACA
ACAGAAGATCACAAGTCAAGCTTTTGGGAATGGGAACTTGGAGACTGGAAGGACTCCAGA
TTGATGAGGATTTTAGCAATAGATGGTGGTGCAGTCTCATTCATAGACCACACATTGAAA
CATGCACTCCAAACTTCCATCTTGATCACATATCCAACAGATTCAAGAAGTATGAATATG
TTGGATTCAGAAAAGTGGTCGATGAGAAATGATATAAATGTCCTTATTTTCTCTCATCAA
TTTATAAGTAATGTGAGTGCTAGAATCTTTGACTCTCATTGTGAGTTTAAGATTGTCGAG
GAGATACCTCTGCAGCTTGTTACCAGTACTTCTGCTCACAGACCTTTGTTCCATGCCAAA
TGGAATGCTGAAAATTACAGAAGTTCATCCGCCACTCGCTACTGGTTGCAGGTGTTTGTT
CTTGATTCTCATGGTGTAAAAATTTCAAGTGAGCAGAGACCATTTTCAGTTGAGGGTAAG
ATGGCAATTCCCACAAGTCCATGGACCAACTATCTGCTCTTTGAAGTCCAGTGGGAAGGC
ATGTATCAAGTTCTTCTGTGGAGTAATTTGGCCTTCACCATTGTATTGTTGTTCATCCCC
AAACTATTGTATCACTTTGTTAGGAGAAGTTCATCATATCAAAGGTGGGCTGTGTCAATT
CCGTCCTCCTCTATCCAGCAGAGAAAACCTTACTTTTGGTTGGTTTGGTTTTTAATGGAG
GGCACAAGGAGTAAACCTTTCTGGTTTTCTATGGTAACATATGTGCTCTGGCTAATTGAA
ATGCCATGGTTTTGGGGCCATGCAACGTCTGAAAATGGAGAAATCGCTCAAATGTACTTA
TCTGGATGGAGCGTGCCAATTCATGATGGGGGCTTGACGGGCAACAAACTGAGCAACCCA
GATGTGCTTGTCATCACACTACCGTTCCTCTATCTGGTGCTTGTCCCAGTAATAGTCCTT
ACATATGGTCTGTTTGCAGAAAAGGCTACTGTGTTTTTGCAGCACAGAAGAAGAGTAGTA
TACTCTCTTGACTCAACAAATGTGCATGCCGAGTCACCAAGATTGCTGCCAGTTGCTCCA
AGGGCTTCACTAATGAAATTCGCCGACAAGATGGTGTCCATGGTGATCCAATTTTGTGGT
AGCTGGACAAGAAGGGCTCTTCTACTTGCATGCTTGATCACCGCAGCAATACATTTGAAG
CTCTGTTCCAAACTAATGTCAGCATATGGAACTGTACCAGTAGCATTGTCACCCCCATTG
ACATGGATACCATTGTTGCTATTAGGTGGTGCTGCCTATTGTACAGTTCTCCATGCAGAT
TAGCGCTCAGTACTCTGCAATCCTGAAGTGTAGTACTTATTTGCATTGGAGGATTAGGGC
TCATAACTGTGAATTCCTGAAGTGAACGTAGTTGCGTTTCGGGTGCGTGCTGCTGCTGTG
CATTAAATCCTGGAACTGTGGAACATGTCACCTTTCGAT