Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d047833_T011
CDS Infomation	cds chromosome:B73_RefGen_v4:9:142787226:142792861:1 gene:Zm00001d047833 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:autophagy1c description:Serine/threonine-protein kinase ATG1c
Sequence	ATGTTCTACTATTGCTGTTATCACATACAGTTATCGGCTAACATTAATGGTGCTGTGCTA ATCTGTGTAATTGATCCAGTGGAGCGGCTTACAGTTGAAGAATTTGTGCACCACCCATTT CTTTCTGAACATGCTCCAGAGAAGACTTTGAGCCTTACACAATCTGACATAAGAGATGGC TTTCCAAGAAATAATAGCAGTCCAACAAGGCATTCAAACCATAGTTCACAAGAAGATTGT ATGCCTTTTCCTTTAGATGATGAGTCAAGTGGACAGGACGAGGGTCCAGTTCCTGACAGT AAGAGTCTGATGAAATCTTATGGATTTCCCATGGGTAAAAGATTGGATAAAACTTCAGGC CAGAAGAGTCCACCGAAACATAACAGTTTGTTCTCCAGGTATGTCTTGGGCAATAATCAT GCACCTAGTAGCCAACACCATGGCCATTCTGGTAAAGTGACCAAGGAAAGCAAGATTCAT GAAGTACAAGGTCAAAAGGTTGTTTATCCAGAAGATTCCCCTATCATTGATTCATTAGAG TTTGTAGATCAGGAATACGTCTTCGTGTCTGGACCACACCTGGAGGGATCATCATCTTCA ACAAATGCCTCTCAGCAGCTTAATGTACCAGCAAAATATGATAATTCGTCTGTTTCACCA CCAAAGTTAACTTTCATGAGTGCACCAATGCCGATAAATGGTTTGCCGATTAATAGACAA CAACTTGCTGGGACTGGTAGCTTTGACAGCCACTGTTCTCCTGCATCTGGCACTTCACAG GGATCTGCAGATATAAGTGATGCCATGGATCAGCCCCCATCTGATTATCTGACGAGGATT AGATTGTTGGAGCAATATGCATCAGCCATAGCAGGGTTGGTCAGAGATGAGATCAAAGGT GGCAGACACTTGGAAGCGTTCTCTATTCAGCTAATTGTTCTTGCAACCTGGAAGCAAGCA ATTCATATAGGAAATACCTTTGTAGCTTCACCTGCAAGGGAGAGTCCCTCACAGGATATC CCTATGAAGGGGCATATTGCTGGTGCTTCCCATTTGCCTGCGAACTCAAAGCTAGCTGAT GATGCCTGCATGCAGATAGAGAAACAGTTTCTCTCTGAAGTTGAATATGCTGAAGAACTA GCCAGCATTGTGGGACAGATAGCTGATGGTACAGAGATGCCAGATGCAATTGAAATGATA TTTCAGTCGGCTTTACTCATAGGAAGGCGAGGCGGTGTTGATGAAATGTTTGGGAAAGCC GCGGATGCCATGACTGGGTATATGAGGGCGGTATCCATGCTGCGGTTTCTCCTGGTCGAG GCACCATCACTCGCCCTCAACCCCCCTTTGACTCTAACGAGATCCGATCGGAATCGACTG CGCACATACATTGACGCTCTCAACACCAGGCTCTGTCAGATGCAGAGCCAGAGGCATTGA

Peptide Sequence

PEP ID	Zm00001d047833_P011
PEP Infomation	pep chromosome:B73_RefGen_v4:9:142787226:142792861:1 gene:Zm00001d047833 transcript:Zm00001d047833_T011 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:autophagy1c description:Serine/threonine-protein kinase ATG1c
Sequence	MFYYCCYHIQLSANINGAVLICVIDPVERLTVEEFVHHPFLSEHAPEKTLSLTQSDIRDG FPRNNSSPTRHSNHSSQEDCMPFPLDDESSGQDEGPVPDSKSLMKSYGFPMGKRLDKTSG QKSPPKHNSLFSRYVLGNNHAPSSQHHGHSGKVTKESKIHEVQGQKVVYPEDSPIIDSLE FVDQEYVFVSGPHLEGSSSSTNASQQLNVPAKYDNSSVSPPKLTFMSAPMPINGLPINRQ QLAGTGSFDSHCSPASGTSQGSADISDAMDQPPSDYLTRIRLLEQYASAIAGLVRDEIKG GRHLEAFSIQLIVLATWKQAIHIGNTFVASPARESPSQDIPMKGHIAGASHLPANSKLAD DACMQIEKQFLSEVEYAEELASIVGQIADGTEMPDAIEMIFQSALLIGRRGGVDEMFGKA ADAMTGYMRAVSMLRFLLVEAPSLALNPPLTLTRSDRNRLRTYIDALNTRLCQMQSQRH

Transcript Sequence

Transcript ID	Zm00001d047833_T011
Transcript Infomation	cdna chromosome:B73_RefGen_v4:9:142787226:142792861:1 gene:Zm00001d047833 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:autophagy1c description:Serine/threonine-protein kinase ATG1c
Sequence	ACCATATTCAGAGTTGCCTAATATACTCTAACATCATTCGCAGTCGTAGCTAGAGCATCA CAAACGGTCAGACTGGAGGACAAGCTGAAGAGCTGACCCCCCCTGCAGTCATAACTGTGT CGCGGTGCAGAGGCAATGATTGGATAAGAAACCGAAAAGGAGCTCATGCAGGCGGTAGCC CTTTGTGCCGATAATGTCGAGGAAGCCTAGTGCGAGGACGCAGAGCCATTGCGAGGTTGC GTGCGTAGGGTAGTTGTGGTCGATGGAGCTGTTGAGGATGCCGAAGAAGTCAAGCCGCAT AAGTCGTGGGCACGGGCGCAGCACGCGGGAAGGCCCACAGTGTGCCAGGAGGCGCCGGAT TGACGGTGACGCAGAAGGAGGGAGCCATAGACAAAGACGGTGTCGTAGTTGCGACAGTTG ATGTAGAAGGTTAATGTCGAGGTCGATACAGTCAAGCCATCGTGAGTGAGGCGTACCTCG AGTTTGCTAGGCCCGAAAACGCATCGGGAACGAAGGCAGACACTGGTGTTGCCAATATCG GACGTACTAGGCAGAGGGCCCCAACCATGTGTCAACGTCTAAAGGGACCAACAGAGAAGG CCTCGATGACGGTTGCGGTGCAGAACAACGAGGAAGGAGGTGCCACTGCAACTCCCGGTT GCCTGAGGGGATGAAGTACACGAGGATGAGACGACGATGCTGACGACGAGGATGTGCTGG ACGAAGGCGAAGTGGTAGACAAGGCGATGCATTGAGGCTTAGTTGCGGCAGCGCAAGAGA TGGAGGCGACGACACGCCAGGACGTCGCGACAGAGGTCATCGCACGAAGCGACCCGACAG AGGCCCGCGCGATGCGGCTCTGGTGGATGCCGACGTGACGGGATCCAGGGCGACGGTGCC TCGACAGAGTCCGGTGCGGCCTAGGCGAAGGGGTGTGGATCAGCCCAAGGAGGAGGCCGA CATAGTGCGACCTCGCGTGGAAGCCAACTATGGGATCTGCTGTGACAGGATGCCACCAAC ATAAACCCCAGCCTAACGTCGTGGATCCAAGCGCTCCTCCCACAGTTGTCACCACGACGG TGTAGGGTGGGGGAGCTCGGGTGCAGCCATCTCCACGACGGCCTATGGAGGGGGTAAGCG TGGCCTAGCTTGCAACAGAGCCCGAGATTCGACTGACGATGACGCACGGAGCAGCTGGTG GTTCCGATCTGTTGTGCTTGACAACGCGACGACGATGACAAGCACGACGGATTAGATGAA CCTGCGACGCATCCTACGATGGTGCTGCGCCCGACGGAGATCGATCTCCCCAGGGGCGGC ACGACGGTGACAGCGGAAGACGACTTTTGGATCTAAAACCTAAACTCGCTATACCATATA GAAATGAGAGATTGTGTATAATAGAAGGGATGAGTTGTATTGAGCTTTTAGAGTAAATAT ATAGGAGTACATGACTTGAAGGGTAAGTAGTCTATCCTAGAGATGAGGAAGGTTATCCTG GGATTATAATCAATCCTAGATTATCCATATCCGGAGTTGCCTAATATACTCTAACACTAA ATCAATGAATATGGACTGTATGCAATGAACATTAATGCCACATTATATTTTCTTTAGGAC CTTTTTGGAGCTACTGCAAATAGCGATCTTTCTGAAGTCTGGCATTTCTAGACATAAGTG AACAAATGTAATACACTTCTGCAACATATTGTACACTTACCTATGCTTTGTTATAGAACA TCATTTTTAGTAGTTCACATTCTTTGATTTTTTTTGCAAATATAATCAGGGCACCATTTC ATAATGTTACAAAACTATTTATCTTTGTGAAAAACTTTGTGCACCAATAATTTAATTAAA ATAACTATCTTGACTCCTAATAGCTTGAGATATTCAGGACTGCTGTATGGTTCAGCTATT CAACCTGTGCATGTTCTTGCATTGAAATTTACATAAAGTTTGTAGAAAAATAAGAATATG TGGAGAAACCAAGTACAGGAATACAAGACTATATTTCAACGTAACTTACTGTGAATAACA ATAGATAAGGGCATAAGGCTTTGGGTAGACTTCAGCTCCTCACACCTGTAGTTCATAGTA ACATTCACACAGCTTTCTCTCCATGCAATACGATTTTTGTCGGACTAAGGTCACTTTAAG AGGTGGATGCCTGAATGAGCTGTTCGACAGCTTGATAGTATGAGTATCACTGTATCAGAC ATATGATAGCTTGTTTTCCCTTTTTGCATGAGCAGATTTTTGCAACCTTTTGCCCTAGCT GAAACTCTTTGTGGTTCGCCACTTTACATGGCTCCAGAAGTCATGCAAGCTCAGAAGTAT GATGCAAAGGCAGATCTGTGGAGTGTCGGTGTCATTCTATATCAACTTGTTACTGGAAGA CCACCTTTTAATGGGGGCAATCAGATCCAGTTGCTTAAAAATATACTCAGGACATGTGAA ATACGCTTCCCATCTGATTGTGACTTGAGCCATGGCTGCATTGACTTGTGCAGAAAGTTG CTGCGGCTCAATTCAGGTTAAATCACTAATTTGTAGTTACATCGAGTTCCTATGGTATCC GCACTGAGCACATAGAGCTTTATGATATTGTCATTGATGGTTCAAAGAAGTTTTCCCTGC GTTATTATTCTTATGTTGTGACTTGGAATGGGGAAATGGCACAAGTATTGTTGTATTGAT GTATTACATTTGTTCTTTCGAAAATGAATGGTACCATGCAAGGGCAGTTTTATACCCTGC CATTTGTCCTTTTATTTTACTATATGACTCTGTTAGTACCTGTTTTTCAGATTTGATGTT CAACTCAGACTATTCCTTAACATTAAGAAATTCTCTAGCGGATATTTAACCTGTTTTAGA TAAAAGTGTTTTTAGAATACCACTTTTTTCAAGGCATACTTTCTTCTGCAAAAGTATGTT TAGGAAATAAGAACATCAAAGGTGTGTTGTTTTTGTTTTTGCATTTGATCATAGCACTAG TGCCTAAACTGATAATGTACAGCTGTAGCATAACCTCATATCTAGTATTTAACAGAGGCT AAAATGTAATGTTCTACTATTGCTGTTATCACATACAGTTATCGGCTAACATTAATGGTG CTGTGCTAATCTGTGTAATTGATCCAGTGGAGCGGCTTACAGTTGAAGAATTTGTGCACC ACCCATTTCTTTCTGAACATGCTCCAGAGAAGACTTTGAGCCTTACACAATCTGACATAA GAGATGGCTTTCCAAGAAATAATAGCAGTCCAACAAGGCATTCAAACCATAGTTCACAAG AAGATTGTATGCCTTTTCCTTTAGATGATGAGTCAAGTGGACAGGACGAGGGTCCAGTTC CTGACAGTAAGAGTCTGATGAAATCTTATGGATTTCCCATGGGTAAAAGATTGGATAAAA CTTCAGGCCAGAAGAGTCCACCGAAACATAACAGTTTGTTCTCCAGGTATGTCTTGGGCA ATAATCATGCACCTAGTAGCCAACACCATGGCCATTCTGGTAAAGTGACCAAGGAAAGCA AGATTCATGAAGTACAAGGTCAAAAGGTTGTTTATCCAGAAGATTCCCCTATCATTGATT CATTAGAGTTTGTAGATCAGGAATACGTCTTCGTGTCTGGACCACACCTGGAGGGATCAT CATCTTCAACAAATGCCTCTCAGCAGCTTAATGTACCAGCAAAATATGATAATTCGTCTG TTTCACCACCAAAGTTAACTTTCATGAGTGCACCAATGCCGATAAATGGTTTGCCGATTA ATAGACAACAACTTGCTGGGACTGGTAGCTTTGACAGCCACTGTTCTCCTGCATCTGGCA CTTCACAGGGATCTGCAGATATAAGTGATGCCATGGATCAGCCCCCATCTGATTATCTGA CGAGGATTAGATTGTTGGAGCAATATGCATCAGCCATAGCAGGGTTGGTCAGAGATGAGA TCAAAGGTGGCAGACACTTGGAAGCGTTCTCTATTCAGCTAATTGTTCTTGCAACCTGGA AGCAAGCAATTCATATAGGAAATACCTTTGTAGCTTCACCTGCAAGGGAGAGTCCCTCAC AGGATATCCCTATGAAGGGGCATATTGCTGGTGCTTCCCATTTGCCTGCGAACTCAAAGC TAGCTGATGATGCCTGCATGCAGATAGAGAAACAGTTTCTCTCTGAAGTTGAATATGCTG AAGAACTAGCCAGCATTGTGGGACAGATAGCTGATGGTACAGAGATGCCAGATGCAATTG AAATGATATTTCAGTCGGCTTTACTCATAGGAAGGCGAGGCGGTGTTGATGAAATGTTTG GGAAAGCCGCGGATGCCATGACTGGGTATATGAGGGCGGTATCCATGCTGCGGTTTCTCC TGGTCGAGGCACCATCACTCGCCCTCAACCCCCCTTTGACTCTAACGAGATCCGATCGGA ATCGACTGCGCACATACATTGACGCTCTCAACACCAGGCTCTGTCAGATGCAGAGCCAGA GGCATTGACTGCTGCCATGCGCCCTCAAATCTTGTCCAGGTGTTGTACAATATTCTTTCA TTTGTAAATATATTTGTTGGCCCAAACTAGGGCATATGTAACATGTCAGAACTGTGGAAC TAGGCAGAGCAGCGAAAATCTATTGTAAATATATTTGTAGTGTGGAATTAGGCAGAGTGT ACGTGGTAGGTTCATTCTGTGTCGATTCAGGCAGAAGCTTGAAAACCGAATAACCAATAA TAGTCACGTGTGGAAAT