Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d047833_T010
CDS Infomation	cds chromosome:B73_RefGen_v4:9:142786328:142792897:1 gene:Zm00001d047833 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:autophagy1c description:Serine/threonine-protein kinase ATG1c
Sequence	ATGGCTCCAGAAGTCATGCAAGCTCAGAAGTATGATGCAAAGGCAGATCTGTGGAGTGTC GGTGTCATTCTATATCAACTTGTTACTGGAAGACCACCTTTTAATGGGGGCAATCAGATC CAGTTGCTTAAAAATATACTCAGGACATGTGAAATACGCTTCCCATCTGATTGTGACTTG AGCCATGGCTGCATTGACTTGTGCAGAAAGTTGCTGCGGCTCAATTCAGTGGAGCGGCTT ACAGTTGAAGAATTTGTGCACCACCCATTTCTTTCTGAACATGCTCCAGAGAAGACTTTG AGCCTTACACAATCTGACATAAGAGATGGCTTTCCAAGAAATAATAGCAGTCCAACAAGG CATTCAAACCATAGTTCACAAGAAGATTGTATGCCTTTTCCTTTAGATGATGAGTCAAGT GGACAGGACGAGGGTCCAGTTCCTGACAGTAAGAGTCTGATGAAATCTTATGGATTTCCC ATGGGTAAAAGATTGGATAAAACTTCAGGCCAGAAGAGTCCACCGAAACATAACAGTTTG TTCTCCAGGTATGTCTTGGGCAATAATCATGCACCTAGTAGCCAACACCATGGCCATTCT GGTAAAGTGACCAAGGAAAGCAAGATTCATGAAGTACAAGGTCAAAAGGTTGTTTATCCA GAAGATTCCCCTATCATTGATTCATTAGAGTTTGTAGATCAGGAATACGTCTTCGTGTCT GGACCACACCTGGAGGGATCATCATCTTCAACAAATGCCTCTCAGCAGCTTAATGTACCA GCAAAATATGATAATTCGTCTGTTTCACCACCAAAGTTAACTTTCATGAGTGCACCAATG CCGATAAATGGTTTGCCGATTAATAGACAACAACTTGCTGGGACTGGTAGCTTTGACAGC CACTGTTCTCCTGCATCTGGCACTTCACAGGGATCTGCAGATATAAGTGATGCCATGGAT CAGCCCCCATCTGATTATCTGACGAGGATTAGATTGTTGGAGCAATATGCATCAGCCATA GCAGGGTTGGTCAGAGATGAGATCAAAGGTGGCAGACACTTGGAAGCGTTCTCTATTCAG CTAATTGTTCTTGCAACCTGGAAGCAAGCAATTCATATAGGAAATACCTTTGTAGCTTCA CCTGCAAGGGAGAGTCCCTCACAGGATATCCCTATGAAGGGGCATATTGCTGGTGCTTCC CATTTGCCTGCGAACTCAAAGCTAGCTGATGATGCCTGCATGCAGATAGAGAAACAGTTT CTCTCTGAAGTTGAATATGCTGAAGAACTAGCCAGCATTGTGGGACAGATAGCTGATGGT ACAGAGATGCCAGATGCAATTGAAATGATATTTCAGTCGGCTTTACTCATAGGAAGGCGA GGCGGTGTTGATGAAATGTTTGGGAAAGCCGCGGATGCCATGACTGGGTATATGAGGGCG GTATCCATGCTGCGGTTTCTCCTGGTCGAGGCACCATCACTCGCCCTCAACCCCCCTTTG ACTCTAACGAGATCCGATCGGAATCGACTGCGCACATACATTGACGCTCTCAACACCAGG CTCTGTCAGATGCAGAGCCAGAGGCATTGA

Peptide Sequence

PEP ID	Zm00001d047833_P010
PEP Infomation	pep chromosome:B73_RefGen_v4:9:142786328:142792897:1 gene:Zm00001d047833 transcript:Zm00001d047833_T010 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:autophagy1c description:Serine/threonine-protein kinase ATG1c
Sequence	MAPEVMQAQKYDAKADLWSVGVILYQLVTGRPPFNGGNQIQLLKNILRTCEIRFPSDCDL SHGCIDLCRKLLRLNSVERLTVEEFVHHPFLSEHAPEKTLSLTQSDIRDGFPRNNSSPTR HSNHSSQEDCMPFPLDDESSGQDEGPVPDSKSLMKSYGFPMGKRLDKTSGQKSPPKHNSL FSRYVLGNNHAPSSQHHGHSGKVTKESKIHEVQGQKVVYPEDSPIIDSLEFVDQEYVFVS GPHLEGSSSSTNASQQLNVPAKYDNSSVSPPKLTFMSAPMPINGLPINRQQLAGTGSFDS HCSPASGTSQGSADISDAMDQPPSDYLTRIRLLEQYASAIAGLVRDEIKGGRHLEAFSIQ LIVLATWKQAIHIGNTFVASPARESPSQDIPMKGHIAGASHLPANSKLADDACMQIEKQF LSEVEYAEELASIVGQIADGTEMPDAIEMIFQSALLIGRRGGVDEMFGKAADAMTGYMRA VSMLRFLLVEAPSLALNPPLTLTRSDRNRLRTYIDALNTRLCQMQSQRH

Transcript Sequence

Transcript ID	Zm00001d047833_T010
Transcript Infomation	cdna chromosome:B73_RefGen_v4:9:142786328:142792897:1 gene:Zm00001d047833 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:autophagy1c description:Serine/threonine-protein kinase ATG1c
Sequence	GAACATTCTTCTTGTTGAAAATAATGAAAATTCTCTGTTGAAGATCGCTGACTTTGGATT TGCAAAATTTTTGCAACCTTTTGCCCTAGCTGAAACTCTTTGTGGTTCGCCACTTTACAT GGCTCCAGAAGTCATGCAAGCTCAGAAGTATGATGCAAAGGCAGATCTGTGGAGTGTCGG TGTCATTCTATATCAACTTGTTACTGGAAGACCACCTTTTAATGGGGGCAATCAGATCCA GTTGCTTAAAAATATACTCAGGACATGTGAAATACGCTTCCCATCTGATTGTGACTTGAG CCATGGCTGCATTGACTTGTGCAGAAAGTTGCTGCGGCTCAATTCAGTGGAGCGGCTTAC AGTTGAAGAATTTGTGCACCACCCATTTCTTTCTGAACATGCTCCAGAGAAGACTTTGAG CCTTACACAATCTGACATAAGAGATGGCTTTCCAAGAAATAATAGCAGTCCAACAAGGCA TTCAAACCATAGTTCACAAGAAGATTGTATGCCTTTTCCTTTAGATGATGAGTCAAGTGG ACAGGACGAGGGTCCAGTTCCTGACAGTAAGAGTCTGATGAAATCTTATGGATTTCCCAT GGGTAAAAGATTGGATAAAACTTCAGGCCAGAAGAGTCCACCGAAACATAACAGTTTGTT CTCCAGGTATGTCTTGGGCAATAATCATGCACCTAGTAGCCAACACCATGGCCATTCTGG TAAAGTGACCAAGGAAAGCAAGATTCATGAAGTACAAGGTCAAAAGGTTGTTTATCCAGA AGATTCCCCTATCATTGATTCATTAGAGTTTGTAGATCAGGAATACGTCTTCGTGTCTGG ACCACACCTGGAGGGATCATCATCTTCAACAAATGCCTCTCAGCAGCTTAATGTACCAGC AAAATATGATAATTCGTCTGTTTCACCACCAAAGTTAACTTTCATGAGTGCACCAATGCC GATAAATGGTTTGCCGATTAATAGACAACAACTTGCTGGGACTGGTAGCTTTGACAGCCA CTGTTCTCCTGCATCTGGCACTTCACAGGGATCTGCAGATATAAGTGATGCCATGGATCA GCCCCCATCTGATTATCTGACGAGGATTAGATTGTTGGAGCAATATGCATCAGCCATAGC AGGGTTGGTCAGAGATGAGATCAAAGGTGGCAGACACTTGGAAGCGTTCTCTATTCAGCT AATTGTTCTTGCAACCTGGAAGCAAGCAATTCATATAGGAAATACCTTTGTAGCTTCACC TGCAAGGGAGAGTCCCTCACAGGATATCCCTATGAAGGGGCATATTGCTGGTGCTTCCCA TTTGCCTGCGAACTCAAAGCTAGCTGATGATGCCTGCATGCAGATAGAGAAACAGTTTCT CTCTGAAGTTGAATATGCTGAAGAACTAGCCAGCATTGTGGGACAGATAGCTGATGGTAC AGAGATGCCAGATGCAATTGAAATGATATTTCAGTCGGCTTTACTCATAGGAAGGCGAGG CGGTGTTGATGAAATGTTTGGGAAAGCCGCGGATGCCATGACTGGGTATATGAGGGCGGT ATCCATGCTGCGGTTTCTCCTGGTCGAGGCACCATCACTCGCCCTCAACCCCCCTTTGAC TCTAACGAGATCCGATCGGAATCGACTGCGCACATACATTGACGCTCTCAACACCAGGCT CTGTCAGATGCAGAGCCAGAGGCATTGACTGCTGCCATGCGCCCTCAAATCTTGTCCAGG TGTTGTACAATATTCTTTCATTTGTAAATATATTTGTTGGCCCAAACTAGGGCATATGTA ACATGTCAGAACTGTGGAACTAGGCAGAGCAGCGAAAATCTATTGTAAATATATTTGTAG TGTGGAATTAGGCAGAGTGTACGTGGTAGGTTCATTCTGTGTCGATTCAGGCAGAAGCTT GAAAACCGAATAACCAATAATAGTCACGTGTGGAAATGTAAACAGCTCGGCCTCTACTTC GTAGATTCTTTAT