Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d047813_T002
CDS Infomation

cds chromosome:B73_RefGen_v4:9:142473442:142477283:1 gene:Zm00001d047813 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:GRAS-transcription factor 1
Sequence

ATGCCCGTGCCCACCTCAGGCTGCATCACATCATCGCCCACGCCCAGCACCACCACCGGC
GGCGCACCACCGGCGGCGCCAGCACCAGTGCCAGCGCAGGCGGAGGCCCGGGCGACGCGG
ACTGGCCTGCTCTTCCTCAGCGGCGTCCCTTCCTGTAAGGTAACCCTGTCGTCGGTTCTT
AATCTTACTCTTATTGGTAAATTAGTGTATGGTTATTGTAAATTAAGATCCATCATTGTT
GCTAATGGCCGGTCTTCCGGCGAGGAGGTCACGTGCAGGTTACCGATGGGTCTGGATAAT
ACTTATGGCGAGCTATCTGGCATGTTCTATGGAGGCCTGTCTTATGATGGCTACGCAGAC
CACAGCAGCGCAAGTGATTATTTCAGGTTTGCCGATCCACTTCCTGCAGTTGTGCCCCAG
ATGGCAGCAGAAGCCTGTTCAAATCCTTCCTCCACTGTGTCGAGGGCCAACACTGAAGCT
GACAACCCGGAGGATTGGGAATTCATCTCAGATGAGTCCCTCAACTATATTAGCCGGATG
CTCATGGAGGAGGATATTGATGAGAAAGTTAGCATGTACCAGGCGGAGTCAGCGGCACTG
CGTGCTGCTGCAAAGCCATTCTACGACATTCTTGGGCACAAGTTTCCACCGTCTCCTGAC
CGGCAGGTGATGCCTTGGCCCATGGACAGCCCCAGTGAGAGCAGCGGTAGCATTTGCACA
CAATCTGTGGCAAGTGCTGTCACTAGCAGCAGTGTTGGTGGCACAGTGGATAGCAACCGG
TGCTACGATGTTGGACACAGTGAGCAGCTGGAAGCTTTTCGAGGCTTGTGTGGTCAGTCT
TCTCATCCACTTGTTGGTGCATCAAGTGATGCTTCCAATGCAGTGGGTGAGCTAGAAGAC
ATTTTGATCACGAATGGTGGGATCCCTGAGTATTTGTTTGAGAGCCTTCCAACTTGGGAT
TTCAGGAGAGGTATTGAGGAAGCCCAGAAGAGTCTTCCTGTTAGCGATAAACTAGTAATT
GATTTAGAAACTGGTGGTATTGCAAGACCCCAAGAAGCAAGGAAAGATGTTCCTATGAAT
GCCAAAAAGGACGATGTATTGAAGGCCAAGAAAAATAGACAGAGTGAAGACCTTGACCTG
ATGGAAGGCCGGAACATTAAACAGTCTGCATTTTGTTCCGATGAACCTGGTTGGATTGAG
ATGTTCGATGATCTGCTTCGCCAAACTGAGAAGAAGGCTACAGTTCTGCGAGAGCTGATG
CGTAGTGAAGCATCCAAGAATTCTCAGGTCACTCAGATGAAAGGACCAAGTGGTCCACGG
CCACGGGGAAGGAAACCAACAAAGAATGATGTGGTGGACCTTAGGACCATCCTCATCCAC
TGTGCACAGGCTGTGGCAGCAGATGACCGCAGAACTGCTAATGAATTGTTAAAGCAAATA
AGGCACCATTCCAAGCCAAACGGCGATGGAACCCAGAGGTTAGCACATTGTTTTGCAGAT
GGTCTCGAGGCTCGCTTGGCAGGCACAGGGAGTCAGCTTTACCGCAAGCTTATAGCGAAA
CGTACAACTGCCTCAGACATGCTTAAAGCCTACCACCTTTTCCTTGCAGCAAGCCCGTTT
AAGAGACTTTCACATTTTCTTTCCAATCAAACAATCTTGAGTTTGACTAAAAATGCATCA
AAGGTGCATATCATTGACTTTGGCATTTATTTTGGATTCCAATGGCCATGCCTAATCAGG
CGTCTCTCCAAGAGGGAAGGTGGTCCACCTGTTCTGCGCATCACTGGAATCGACGTACCT
CAGCCAGGTTTCCGCCCTACCGAGAGAATTGAAGAGACTGGACAAAGGCTTGCAGAGTAT
GCTGAGAAGTTCAAGGTGCCTTTTGAGTATCAGGGAATAGCGTCAAAGTGGGAAAGCATC
CGAGTTGAGGATCTCAAAGTTGGCAAGGACGAAGTTGTGATTGTTAATTGCCTATACAGA
TTCAGAAACCTGATTGATGAAACAGTTGCTGTAGACAGTCCTAGGAATAGAGTGCTCAAC
ACCATAAGGCAAGTAAACCCAGCGATTTTCATCCATGGAATTGTGAATGGGTCATACAGC
GTTCCCTTCTTCATCACTCGTTTCCGTGAGGCGCTGTTCCATTTCTCTGCACTGTTTGAC
ATGCTAGAGACAACTGTCCCACGGGATGATGCACAGCGTGCGCTCATAGAGAGGGAAATG
TTTGGCCGAGAGGCACTCAACGTTATTGCATGTGAGGGCTCAGACAGAGTTGAGAGACCC
GAGACATATAAACAGTGGCAGGTGAGGAACCTCAGGGCTGGATTTGTCCAGTCTCCGTTA
AACCAAGAAATTGTGATGAAAGCCATGGACAAAGTAAAAGACATTTATCACAAGGACTTC
GTCATAGATGAAGACAACGGATGGCTCCTACAAGGCTGGAAAGGAAGGATACTCTATGCA
ATTTCTACATGGAAGCCTAAGAATAACTAG

Peptide Sequence

PEP ID

Zm00001d047813_P002
PEP Infomation

pep chromosome:B73_RefGen_v4:9:142473442:142477283:1 gene:Zm00001d047813 transcript:Zm00001d047813_T002 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:GRAS-transcription factor 1
Sequence

MPVPTSGCITSSPTPSTTTGGAPPAAPAPVPAQAEARATRTGLLFLSGVPSCKVTLSSVL
NLTLIGKLVYGYCKLRSIIVANGRSSGEEVTCRLPMGLDNTYGELSGMFYGGLSYDGYAD
HSSASDYFRFADPLPAVVPQMAAEACSNPSSTVSRANTEADNPEDWEFISDESLNYISRM
LMEEDIDEKVSMYQAESAALRAAAKPFYDILGHKFPPSPDRQVMPWPMDSPSESSGSICT
QSVASAVTSSSVGGTVDSNRCYDVGHSEQLEAFRGLCGQSSHPLVGASSDASNAVGELED
ILITNGGIPEYLFESLPTWDFRRGIEEAQKSLPVSDKLVIDLETGGIARPQEARKDVPMN
AKKDDVLKAKKNRQSEDLDLMEGRNIKQSAFCSDEPGWIEMFDDLLRQTEKKATVLRELM
RSEASKNSQVTQMKGPSGPRPRGRKPTKNDVVDLRTILIHCAQAVAADDRRTANELLKQI
RHHSKPNGDGTQRLAHCFADGLEARLAGTGSQLYRKLIAKRTTASDMLKAYHLFLAASPF
KRLSHFLSNQTILSLTKNASKVHIIDFGIYFGFQWPCLIRRLSKREGGPPVLRITGIDVP
QPGFRPTERIEETGQRLAEYAEKFKVPFEYQGIASKWESIRVEDLKVGKDEVVIVNCLYR
FRNLIDETVAVDSPRNRVLNTIRQVNPAIFIHGIVNGSYSVPFFITRFREALFHFSALFD
MLETTVPRDDAQRALIEREMFGREALNVIACEGSDRVERPETYKQWQVRNLRAGFVQSPL
NQEIVMKAMDKVKDIYHKDFVIDEDNGWLLQGWKGRILYAISTWKPKNN

Transcript Sequence

Transcript ID

Zm00001d047813_T002
Transcript Infomation

cdna chromosome:B73_RefGen_v4:9:142473442:142477283:1 gene:Zm00001d047813 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:GRAS-transcription factor 1
Sequence

AGAGGACCGGGAGCAGAGCACACACCACCGTCCTCCGCACTATTATTCTTTTCGGATTCC
TTCCACACCCCATGCCCGTGCCCACCTCAGGCTGCATCACATCATCGCCCACGCCCAGCA
CCACCACCGGCGGCGCACCACCGGCGGCGCCAGCACCAGTGCCAGCGCAGGCGGAGGCCC
GGGCGACGCGGACTGGCCTGCTCTTCCTCAGCGGCGTCCCTTCCTGTAAGGTAACCCTGT
CGTCGGTTCTTAATCTTACTCTTATTGGTAAATTAGTGTATGGTTATTGTAAATTAAGAT
CCATCATTGTTGCTAATGGCCGGTCTTCCGGCGAGGAGGTCACGTGCAGGTTACCGATGG
GTCTGGATAATACTTATGGCGAGCTATCTGGCATGTTCTATGGAGGCCTGTCTTATGATG
GCTACGCAGACCACAGCAGCGCAAGTGATTATTTCAGGTTTGCCGATCCACTTCCTGCAG
TTGTGCCCCAGATGGCAGCAGAAGCCTGTTCAAATCCTTCCTCCACTGTGTCGAGGGCCA
ACACTGAAGCTGACAACCCGGAGGATTGGGAATTCATCTCAGATGAGTCCCTCAACTATA
TTAGCCGGATGCTCATGGAGGAGGATATTGATGAGAAAGTTAGCATGTACCAGGCGGAGT
CAGCGGCACTGCGTGCTGCTGCAAAGCCATTCTACGACATTCTTGGGCACAAGTTTCCAC
CGTCTCCTGACCGGCAGGTGATGCCTTGGCCCATGGACAGCCCCAGTGAGAGCAGCGGTA
GCATTTGCACACAATCTGTGGCAAGTGCTGTCACTAGCAGCAGTGTTGGTGGCACAGTGG
ATAGCAACCGGTGCTACGATGTTGGACACAGTGAGCAGCTGGAAGCTTTTCGAGGCTTGT
GTGGTCAGTCTTCTCATCCACTTGTTGGTGCATCAAGTGATGCTTCCAATGCAGTGGGTG
AGCTAGAAGACATTTTGATCACGAATGGTGGGATCCCTGAGTATTTGTTTGAGAGCCTTC
CAACTTGGGATTTCAGGAGAGGTATTGAGGAAGCCCAGAAGAGTCTTCCTGTTAGCGATA
AACTAGTAATTGATTTAGAAACTGGTGGTATTGCAAGACCCCAAGAAGCAAGGAAAGATG
TTCCTATGAATGCCAAAAAGGACGATGTATTGAAGGCCAAGAAAAATAGACAGAGTGAAG
ACCTTGACCTGATGGAAGGCCGGAACATTAAACAGTCTGCATTTTGTTCCGATGAACCTG
GTTGGATTGAGATGTTCGATGATCTGCTTCGCCAAACTGAGAAGAAGGCTACAGTTCTGC
GAGAGCTGATGCGTAGTGAAGCATCCAAGAATTCTCAGGTCACTCAGATGAAAGGACCAA
GTGGTCCACGGCCACGGGGAAGGAAACCAACAAAGAATGATGTGGTGGACCTTAGGACCA
TCCTCATCCACTGTGCACAGGCTGTGGCAGCAGATGACCGCAGAACTGCTAATGAATTGT
TAAAGCAAATAAGGCACCATTCCAAGCCAAACGGCGATGGAACCCAGAGGTTAGCACATT
GTTTTGCAGATGGTCTCGAGGCTCGCTTGGCAGGCACAGGGAGTCAGCTTTACCGCAAGC
TTATAGCGAAACGTACAACTGCCTCAGACATGCTTAAAGCCTACCACCTTTTCCTTGCAG
CAAGCCCGTTTAAGAGACTTTCACATTTTCTTTCCAATCAAACAATCTTGAGTTTGACTA
AAAATGCATCAAAGGTGCATATCATTGACTTTGGCATTTATTTTGGATTCCAATGGCCAT
GCCTAATCAGGCGTCTCTCCAAGAGGGAAGGTGGTCCACCTGTTCTGCGCATCACTGGAA
TCGACGTACCTCAGCCAGGTTTCCGCCCTACCGAGAGAATTGAAGAGACTGGACAAAGGC
TTGCAGAGTATGCTGAGAAGTTCAAGGTGCCTTTTGAGTATCAGGGAATAGCGTCAAAGT
GGGAAAGCATCCGAGTTGAGGATCTCAAAGTTGGCAAGGACGAAGTTGTGATTGTTAATT
GCCTATACAGATTCAGAAACCTGATTGATGAAACAGTTGCTGTAGACAGTCCTAGGAATA
GAGTGCTCAACACCATAAGGCAAGTAAACCCAGCGATTTTCATCCATGGAATTGTGAATG
GGTCATACAGCGTTCCCTTCTTCATCACTCGTTTCCGTGAGGCGCTGTTCCATTTCTCTG
CACTGTTTGACATGCTAGAGACAACTGTCCCACGGGATGATGCACAGCGTGCGCTCATAG
AGAGGGAAATGTTTGGCCGAGAGGCACTCAACGTTATTGCATGTGAGGGCTCAGACAGAG
TTGAGAGACCCGAGACATATAAACAGTGGCAGGTGAGGAACCTCAGGGCTGGATTTGTCC
AGTCTCCGTTAAACCAAGAAATTGTGATGAAAGCCATGGACAAAGTAAAAGACATTTATC
ACAAGGACTTCGTCATAGATGAAGACAACGGATGGCTCCTACAAGGCTGGAAAGGAAGGA
TACTCTATGCAATTTCTACATGGAAGCCTAAGAATAACTAGGTTCTTGGTCTCACGCGTA
ATCTCTCCTATTCCATCGATGGTGGCAGCTAATTAATCAGTCCTGCTATCTTATAACATT
TGGGCCTTGACCTGTGAACCTGTCTGATCAAGGCAATGGCTTGAAGCCGGACAATGATCA
ACATGGAGGTTTGCTAGATTTACATCTGTCCAGCCAGTACTCTGATAAACTGGAAAAGAG
CAGCTGTAGACGTCTCTAACTTGGTGTTGGTACCATCACCTTTATTTAATTCGTAGTTTT
CTTCTTTCCATTTACTTCTATGACCGGCCTGGCGTCCTATTACCAACAACCAGATCACCG
CTTCTAGTTCAAAATGGCTAGGCAAACTACCTACTATCTTGAGCTTAATATTTTTGACTT
GTATCCATCCATGTCAAACATCAGTTCGGTTTTCAGCACCTGCAGATCAGAAATTCCCCA
ACGAGTAAGCCTAAAGCATCAAAATTTGTTATACGAGAACGGACGCTGCTGTTTGTGTGG
AATGTAGCATCTCATGGAGTGCTTTATCTTTGAATTCTTCGTTTATTTATTTCATCTGTT
TTGTAGCAAGTGACGCTGCTGTCACAAAAACGAGTCCTTAAACTTGAGTGGAGCACTAGT
TTGAGAATATTACTAGAAAGTGGTGCTACAGATGAACATATATATAGTACTTTGCTTTTG
G