Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d047701_T002
CDS Infomation	cds chromosome:B73_RefGen_v4:9:139521822:139527879:1 gene:Zm00001d047701 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein SCAR2
Sequence	ATGCCCCTGTCGCGGCACACGGTCGGGAACGAGTACGCGCTGGGTGGCCGCGACCTCTAC CGCGCGGCCGACCAGCACGACCCGGAGGACGTCCTCGATGGCGTCGCCATGGCCGGACTC GTCGGCGTCCTCCGCCAGCTCGGCGACCTCGCCGAGTTTGCTGCACAGGTGTTCCACGGC CTGTACGACGAGGTGATGAGCACGTCCGCGCGAGGGCACGGCCTCATGCTCCGGGTGCAG CAGCTGGAGGCAGAGCTGCCGCTGCTGGAGAGAGACTCCTGCCAGAGAGACTACCTGCAT GTCGCTTCTAACAGGGGTGTCGATTGGCGTTCGAATCCGAGGGTCGACCAAGGGGTTGTC ACGAGAGGCGACACGCCTCGCTTCATCATGGAGTCAATCAAGCAGTGTCGCGGACCACCC AAGCTCTTCATGCTCGACAAGTATGATATCGGCGGCGAGGGGGCGTGCTTGAAGAGATAC ACCGACCCGTCTTTCTTCAGGACGGATTCCGCATGTTCCACCTTGCCGCATGAGGAAGGA ATTCGAGATGAAAGAAGACCTCCCAAAGCCATGGAGATCAGGCCTAACCTTGAGAATGCC CAGATTTTCCAGCCCCCTAACGCAGCCGACAATGTCTCCAAGCTGGAGACTGATCCATCT GCTGAAGCTATGGATGAAGTGCCCACAAACCGCAGACGGCTGAAGTACCGCCAACTAAAT GGATCTGTATTCCAAAGCTTCAGACCACTTATGCTGAATCTGTATGAAAAGCCTTCGTCA GAGGAGAAACTCGTCACAGGTGGCCACTCAAAAGTGCGTATATCTGTGAATGGTTCACCT GAATCGGATACTGAAGAGAGAGATACCATGGTAGACACGTCCGTCAACATGGGCAAAGGC AAGGTCGCTGTTCGCAAGAACAGACCAGTTTCTGAAGAAGCACTGTCACGTTCTTCAGAT GCTCGGTCAGCTGGAAGCAGCAAGGGCTACAACTCCGAATTGGATGTCTACGTGGACGCA TTAACCACGGTGGACTCTGAAGCGGAGACAGACTCGGAACACAGGGGCCATGGACAATGT ACCTTTGATCGGATGGATTCAGACAATAGATTCTCCAATGCTCAAAACGCCATGACATCG AGGAACAGCAACTTCGACAAGAAAGATAGGCCAGATGTTCCCTCAGCAAATAGAGATATG AGTAACCAGCATGAAGAAGCCACGGTCTCCACACAAAACACCAAACCAGTGGTTGTTGGC GAACATGAGAGGACCAGCTCGTTAGAGGAACTGCTTGGCCAAGAAAAACCTGCTTCTTGG GATCATGAGAGGACTAGCTCCTTGGAGGAATTGCTCACCGAAGATTTCAATGCTCCAGAA TCTGGAGCAAGAGAGCAGGCTACTGAAGAGCAGAGCTGCAATGGCAGTGCCACCGGTGCT GTATCAAATGGCACACAAGATATTACTAAGAAGACCAAGGAAGTCAAGGAGAACTCTAAC ATTGCAACTATTTCCTTCAAGAAAATAGCAAGCAAGAGGTCCAGATATGTCGGCAGCATG GCTGCAAAAGTTGGCATTCTGCCAAGGAAACTCTCCAAGAAGCATGACCCTTTCTCTGAT TCCCTCCGGTGCATGGCGAAGCAACTCCTTGAACTGAAGTACGATGGCACTAAAGATAGC GACTTATATGACTTTGAAGCAAACAGTGTGGGATGTGATGTCAAGTATCAGGGAATTTCT GACCCTCCTGTTGAAATTAAGGAGAGTGACGTGCACAAATTTCTGCCAGATTCATCCTAT GATGATGTGGGTTCAAGAAAATGCCCGCAGGAAGAAATGAACCATGGGCAGGAGCATGAT GCTCCACCTACTGACAGTCCACATGATTCAGTCCCTGATGAAGGAAACGGATTTCAGGAC CCCAACATGATCTACTTGGCAAGCATCATCACATCTTCCAGTTCCCAAGAGGAAGAAGGA TGTGCAAGTACTTCACTGCATGAGAATTCATCTATGGCAGTGCTCAACCATATTTTGGAG CATGCTCAAGAGAAGTTTGAGGAACATCTTGACAAGGATGTGAATGAGGACATTCATACA GAAGTCATTTCTGAAAATTCATCTGGCAAGTGTGAAGACTTGAAAGAAGTCAGCATTTAC TCAGAGCAGGTGAATGTGGAAGATATGGAGGAAAGCAATAAATCTGATGTATATGTGTTG GATGATGAAACAGCCGAGTACATAGAAGAGCAAGTAGTTTCAGATGGTATGAACTCTTCA CCGGTTTCATCCAAGCAATCAGATGATCCCTGCCGGATAACTCCACTCGCCCTCGCAGAT GAAGATGATACAGTGGCATGTAAGGTCATCGATAGCCCTGAAGTGGATCATATTACATTA TCAGAAACATTCACGGACATTGATCTACCTAATGTGGTAAATGAGTCAGTAATCAGCAGC GAACATGCCATGCCAGAAAATGAACAGTACTATTTCCATCCAGAAACTACTTTTGGACAA GATCTGTGTCTCGACAACAATGAAATTGTAGGGGAAAATGGGGAAGTTCCACTATGCAGC TCAACCACTGTGGCTATAACTCCTGAACCAACTGTAAACAGAGAGATAGAACATGAGTTT CATCAAGCTGTGTATCAGGAACCATCGAATTCATTCAATAGCAGTAAAGTTTTTGGAGAT CCACTAGCTTCTGACTCCAGAGATGTTGCACCGTCAGTCATCTCGAGCTTTGATTGGATG CTTAATGGTGCAATGCAGCAGTCATTCAATGTCTTTCCTTCTCATCCAACTAATGGAAAT GAACAAGAAAATGGTTCTTCTGAAGATGCGCCACCACTTCCTCCTCTTCCACCGATGCAG TGGAGAACAAACAAGATACAGACATGCTCATCACCGTTATCTGCAAAGATCGGGAGACCA CCAAGGCCAAAACCTCCAGCAAAACAACAAGAAAGTGAAGCTGCTCATATTCTTCAGGAG AACAATCTCCACAAAGGCTTGAGTTTGCAGAATGAAGTAGCGCAGGCAACTATTTCTAGT GATCATGAGACAAATCAACTCCTTAACATGGATTTTCATGAAAACCATCACCAGGAAGGA GATGAATATCATGCCCAGGATTCCAATCCATTTCCCTCGTCAGAAGCTGAATGTTTGGCA GAAATTGATTCAGTAAAAAGTGAAAATCTGCACCCATTGCAGCTACCTGAGCTTATAGTT GTTCCGGAAGAGGCATGGTCAGAGTTTGGTAATATAAAATTCATGCCAGAACAAGAAGGA AAACTCCAACTAAACAACGGACTTTCTGGTTTGGCAGCACAAAAGACCAGCGGGAAGCCT GATTTGTTTGCATATTATAAGGAAAAGGAATTATCATTTGCAGGTAGTGACAAAGTTGCA AATTCAGAAGAAAACAAACCAAATGGTGCTGTTAAACATATGCAAAATCTGGACTTGCCA GCACAACAGAAAAACGACAAAAATGATTGTGATCGCAAGGCAGAGGAGTTTTCCTCTGCA TTAGAGGATGAATCATCAAAATCACCAACTCATACAGTGCCAAAACCACCTAGATACCCT CTACTTCCTGTTACTTCTCATGACAGAAGCATGCTAAGAAAGGTACCAACTTTGGTTCAG CCTTCGAGTAAGCTTGCAGATGAGAAGAACACACTATTGGAACAGATAAAGAACAAGTCT TTCAACTTGAAGCCTGTTCTTGCAAAGAGACCAAATGTAATGGGTGGTCCAAAAACTAAC TTACAAGTGGTGGCCATTCTAGAGAGAGCCCATGCGATTCGCCAGGCTGTTGCTGATGAC GATGACGACGATAGCTGGAGTGAGTAG

Peptide Sequence

PEP ID	Zm00001d047701_P002
PEP Infomation	pep chromosome:B73_RefGen_v4:9:139521822:139527879:1 gene:Zm00001d047701 transcript:Zm00001d047701_T002 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein SCAR2
Sequence	MPLSRHTVGNEYALGGRDLYRAADQHDPEDVLDGVAMAGLVGVLRQLGDLAEFAAQVFHG LYDEVMSTSARGHGLMLRVQQLEAELPLLERDSCQRDYLHVASNRGVDWRSNPRVDQGVV TRGDTPRFIMESIKQCRGPPKLFMLDKYDIGGEGACLKRYTDPSFFRTDSACSTLPHEEG IRDERRPPKAMEIRPNLENAQIFQPPNAADNVSKLETDPSAEAMDEVPTNRRRLKYRQLN GSVFQSFRPLMLNLYEKPSSEEKLVTGGHSKVRISVNGSPESDTEERDTMVDTSVNMGKG KVAVRKNRPVSEEALSRSSDARSAGSSKGYNSELDVYVDALTTVDSEAETDSEHRGHGQC TFDRMDSDNRFSNAQNAMTSRNSNFDKKDRPDVPSANRDMSNQHEEATVSTQNTKPVVVG EHERTSSLEELLGQEKPASWDHERTSSLEELLTEDFNAPESGAREQATEEQSCNGSATGA VSNGTQDITKKTKEVKENSNIATISFKKIASKRSRYVGSMAAKVGILPRKLSKKHDPFSD SLRCMAKQLLELKYDGTKDSDLYDFEANSVGCDVKYQGISDPPVEIKESDVHKFLPDSSY DDVGSRKCPQEEMNHGQEHDAPPTDSPHDSVPDEGNGFQDPNMIYLASIITSSSSQEEEG CASTSLHENSSMAVLNHILEHAQEKFEEHLDKDVNEDIHTEVISENSSGKCEDLKEVSIY SEQVNVEDMEESNKSDVYVLDDETAEYIEEQVVSDGMNSSPVSSKQSDDPCRITPLALAD EDDTVACKVIDSPEVDHITLSETFTDIDLPNVVNESVISSEHAMPENEQYYFHPETTFGQ DLCLDNNEIVGENGEVPLCSSTTVAITPEPTVNREIEHEFHQAVYQEPSNSFNSSKVFGD PLASDSRDVAPSVISSFDWMLNGAMQQSFNVFPSHPTNGNEQENGSSEDAPPLPPLPPMQ WRTNKIQTCSSPLSAKIGRPPRPKPPAKQQESEAAHILQENNLHKGLSLQNEVAQATISS DHETNQLLNMDFHENHHQEGDEYHAQDSNPFPSSEAECLAEIDSVKSENLHPLQLPELIV VPEEAWSEFGNIKFMPEQEGKLQLNNGLSGLAAQKTSGKPDLFAYYKEKELSFAGSDKVA NSEENKPNGAVKHMQNLDLPAQQKNDKNDCDRKAEEFSSALEDESSKSPTHTVPKPPRYP LLPVTSHDRSMLRKVPTLVQPSSKLADEKNTLLEQIKNKSFNLKPVLAKRPNVMGGPKTN LQVVAILERAHAIRQAVADDDDDDSWSE

Transcript Sequence

Transcript ID	Zm00001d047701_T002
Transcript Infomation	cdna chromosome:B73_RefGen_v4:9:139521822:139527879:1 gene:Zm00001d047701 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein SCAR2
Sequence	CCTCTCCCAGTTTCTCCCCCTCCCTATCTCTCTGTCCCTGCTTGCATTGCTCGTGTTGAC GCGCCTGCAAGTACGAGACAGCGAGCGGGAGGAAGAAGAAACAAAAAGGCCGGCCCCCGA TGCTAGCTCGCCGCAAGAGCACTACCACCACGCCAATCCATTGAGGCGGCTTCGTTAGCG TAGCGGCGGCCGGCGGTGGAAGCTAAGTGTAAAGCGGCCGCCTGCTCGGGGGGATAAAAG CTACAACGGGCAGCGGCAGGAGGAGGCGTCGTCTCGAGGACTGCGCGCAATGCCCCTGTC GCGGCACACGGTCGGGAACGAGTACGCGCTGGGTGGCCGCGACCTCTACCGCGCGGCCGA CCAGCACGACCCGGAGGACGTCCTCGATGGCGTCGCCATGGCCGGACTCGTCGGCGTCCT CCGCCAGCTCGGCGACCTCGCCGAGTTTGCTGCACAGGTGTTCCACGGCCTGTACGACGA GGTGATGAGCACGTCCGCGCGAGGGCACGGCCTCATGCTCCGGGTGCAGCAGCTGGAGGC AGAGCTGCCGCTGCTGGAGAGAGACTCCTGCCAGAGAGACTACCTGCATGTCGCTTCTAA CAGGGGTGTCGATTGGCGTTCGAATCCGAGGGTCGACCAAGGGGTTGTCACGAGAGGCGA CACGCCTCGCTTCATCATGGAGTCAATCAAGCAGTGTCGCGGACCACCCAAGCTCTTCAT GCTCGACAAGTATGATATCGGCGGCGAGGGGGCGTGCTTGAAGAGATACACCGACCCGTC TTTCTTCAGGACGGATTCCGCATGTTCCACCTTGCCGCATGAGGAAGGAATTCGAGATGA AAGAAGACCTCCCAAAGCCATGGAGATCAGGCCTAACCTTGAGAATGCCCAGATTTTCCA GCCCCCTAACGCAGCCGACAATGTCTCCAAGCTGGAGACTGATCCATCTGCTGAAGCTAT GGATGAAGTGCCCACAAACCGCAGACGGCTGAAGTACCGCCAACTAAATGGATCTGTATT CCAAAGCTTCAGACCACTTATGCTGAATCTGTATGAAAAGCCTTCGTCAGAGGAGAAACT CGTCACAGGTGGCCACTCAAAAGTGCGTATATCTGTGAATGGTTCACCTGAATCGGATAC TGAAGAGAGAGATACCATGGTAGACACGTCCGTCAACATGGGCAAAGGCAAGGTCGCTGT TCGCAAGAACAGACCAGTTTCTGAAGAAGCACTGTCACGTTCTTCAGATGCTCGGTCAGC TGGAAGCAGCAAGGGCTACAACTCCGAATTGGATGTCTACGTGGACGCATTAACCACGGT GGACTCTGAAGCGGAGACAGACTCGGAACACAGGGGCCATGGACAATGTACCTTTGATCG GATGGATTCAGACAATAGATTCTCCAATGCTCAAAACGCCATGACATCGAGGAACAGCAA CTTCGACAAGAAAGATAGGCCAGATGTTCCCTCAGCAAATAGAGATATGAGTAACCAGCA TGAAGAAGCCACGGTCTCCACACAAAACACCAAACCAGTGGTTGTTGGCGAACATGAGAG GACCAGCTCGTTAGAGGAACTGCTTGGCCAAGAAAAACCTGCTTCTTGGGATCATGAGAG GACTAGCTCCTTGGAGGAATTGCTCACCGAAGATTTCAATGCTCCAGAATCTGGAGCAAG AGAGCAGGCTACTGAAGAGCAGAGCTGCAATGGCAGTGCCACCGGTGCTGTATCAAATGG CACACAAGATATTACTAAGAAGACCAAGGAAGTCAAGGAGAACTCTAACATTGCAACTAT TTCCTTCAAGAAAATAGCAAGCAAGAGGTCCAGATATGTCGGCAGCATGGCTGCAAAAGT TGGCATTCTGCCAAGGAAACTCTCCAAGAAGCATGACCCTTTCTCTGATTCCCTCCGGTG CATGGCGAAGCAACTCCTTGAACTGAAGTACGATGGCACTAAAGATAGCGACTTATATGA CTTTGAAGCAAACAGTGTGGGATGTGATGTCAAGTATCAGGGAATTTCTGACCCTCCTGT TGAAATTAAGGAGAGTGACGTGCACAAATTTCTGCCAGATTCATCCTATGATGATGTGGG TTCAAGAAAATGCCCGCAGGAAGAAATGAACCATGGGCAGGAGCATGATGCTCCACCTAC TGACAGTCCACATGATTCAGTCCCTGATGAAGGAAACGGATTTCAGGACCCCAACATGAT CTACTTGGCAAGCATCATCACATCTTCCAGTTCCCAAGAGGAAGAAGGATGTGCAAGTAC TTCACTGCATGAGAATTCATCTATGGCAGTGCTCAACCATATTTTGGAGCATGCTCAAGA GAAGTTTGAGGAACATCTTGACAAGGATGTGAATGAGGACATTCATACAGAAGTCATTTC TGAAAATTCATCTGGCAAGTGTGAAGACTTGAAAGAAGTCAGCATTTACTCAGAGCAGGT GAATGTGGAAGATATGGAGGAAAGCAATAAATCTGATGTATATGTGTTGGATGATGAAAC AGCCGAGTACATAGAAGAGCAAGTAGTTTCAGATGGTATGAACTCTTCACCGGTTTCATC CAAGCAATCAGATGATCCCTGCCGGATAACTCCACTCGCCCTCGCAGATGAAGATGATAC AGTGGCATGTAAGGTCATCGATAGCCCTGAAGTGGATCATATTACATTATCAGAAACATT CACGGACATTGATCTACCTAATGTGGTAAATGAGTCAGTAATCAGCAGCGAACATGCCAT GCCAGAAAATGAACAGTACTATTTCCATCCAGAAACTACTTTTGGACAAGATCTGTGTCT CGACAACAATGAAATTGTAGGGGAAAATGGGGAAGTTCCACTATGCAGCTCAACCACTGT GGCTATAACTCCTGAACCAACTGTAAACAGAGAGATAGAACATGAGTTTCATCAAGCTGT GTATCAGGAACCATCGAATTCATTCAATAGCAGTAAAGTTTTTGGAGATCCACTAGCTTC TGACTCCAGAGATGTTGCACCGTCAGTCATCTCGAGCTTTGATTGGATGCTTAATGGTGC AATGCAGCAGTCATTCAATGTCTTTCCTTCTCATCCAACTAATGGAAATGAACAAGAAAA TGGTTCTTCTGAAGATGCGCCACCACTTCCTCCTCTTCCACCGATGCAGTGGAGAACAAA CAAGATACAGACATGCTCATCACCGTTATCTGCAAAGATCGGGAGACCACCAAGGCCAAA ACCTCCAGCAAAACAACAAGAAAGTGAAGCTGCTCATATTCTTCAGGAGAACAATCTCCA CAAAGGCTTGAGTTTGCAGAATGAAGTAGCGCAGGCAACTATTTCTAGTGATCATGAGAC AAATCAACTCCTTAACATGGATTTTCATGAAAACCATCACCAGGAAGGAGATGAATATCA TGCCCAGGATTCCAATCCATTTCCCTCGTCAGAAGCTGAATGTTTGGCAGAAATTGATTC AGTAAAAAGTGAAAATCTGCACCCATTGCAGCTACCTGAGCTTATAGTTGTTCCGGAAGA GGCATGGTCAGAGTTTGGTAATATAAAATTCATGCCAGAACAAGAAGGAAAACTCCAACT AAACAACGGACTTTCTGGTTTGGCAGCACAAAAGACCAGCGGGAAGCCTGATTTGTTTGC ATATTATAAGGAAAAGGAATTATCATTTGCAGGTAGTGACAAAGTTGCAAATTCAGAAGA AAACAAACCAAATGGTGCTGTTAAACATATGCAAAATCTGGACTTGCCAGCACAACAGAA AAACGACAAAAATGATTGTGATCGCAAGGCAGAGGAGTTTTCCTCTGCATTAGAGGATGA ATCATCAAAATCACCAACTCATACAGTGCCAAAACCACCTAGATACCCTCTACTTCCTGT TACTTCTCATGACAGAAGCATGCTAAGAAAGGTACCAACTTTGGTTCAGCCTTCGAGTAA GCTTGCAGATGAGAAGAACACACTATTGGAACAGATAAAGAACAAGTCTTTCAACTTGAA GCCTGTTCTTGCAAAGAGACCAAATGTAATGGGTGGTCCAAAAACTAACTTACAAGTGGT GGCCATTCTAGAGAGAGCCCATGCGATTCGCCAGGCTGTTGCTGATGACGATGACGACGA TAGCTGGAGTGAGTAGCTGGCTCTTCCCCAAAGCGATTTCGGCTCCTGATGTTTCAGAAG TGATTGCATCGATCAGACCTTTGTGTCCCTGTTCTTGCATGGAGCAAAAGATGAAATAGA GCCAAGTTACCACAGGTTTTCATGCCAAGACAATTGGCATGGACCAGGTGATGCCCATGG ATGGGCAGGAACGGTAGAAGCAACGTTGCAACTGCAAACGTAGTGTGTCTCTACTTGTAC TATCTGTGAAGTTTCGAAGTGCGTCAATGTTTATTACCTTTCGATGCGCCTCTTGAAAGT TTCATGTGCTTGGTGAGGATTGTTAGGTTGTATATGCCTCCTAGGACTAGTGTCATTTTT GTAACTTGGTGAGTGTACAGAAAGAAGCATGATTTTTGAGTTGTTCTGGACATCTGAAGC AGATAGAGCAAGCAACTGAATTGTATATGCCTCCTAGGTTGTATATGACTGTACAGATCT CTGAATCCGACAGTTGGCCGCCTAAGCTGAGTTTCAGGAAACAGA