Plant GARDEN
How To ▶︎

JA

EN

TOP > About the Species(Zea mays ) > genome data >Gene sequences

Search

By Species By Keywords Genes By Markers By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d047701_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:9:139521817:139526641:1 gene:Zm00001d047701 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein SCAR2
Sequence

ATGCCCCTGTCGCGGCACACGGTCGGGAACGAGTACGCGCTGGGTGGCCGCGACCTCTAC
CGCGCGGCCGACCAGCACGACCCGGAGGACGTCCTCGATGGCGTCGCCATGGCCGGACTC
GTCGGCGTCCTCCGCCAGCTCGGCGACCTCGCCGAGTTTGCTGCACAGGTGTTCCACGGC
CTGTACGACGAGGTGATGAGCACGTCCGCGCGAGGGCACGGCCTCATGCTCCGGGTGCAG
CAGCTGGAGGCAGAGCTGCCGCTGCTGGAGAGAGACTCCTGCCAGAGAGACTACCTGCAT
GTCGCTTCTAACAGGGGTGTCGATTGGCGTTCGAATCCGAGGGTCGACCAAGGGGTTGTC
ACGAGAGGCGACACGCCTCGCTTCATCATGGAGTCAATCAAGCAGTGTCGCGGACCACCC
AAGCTCTTCATGCTCGACAAGTATGATATCGGCGGCGAGGGGGCGTGCTTGAAGAGATAC
ACCGACCCGTCTTTCTTCAGGACGGATTCCGCATGTTCCACCTTGCCGCATGAGGAAGGA
ATTCGAGATGAAAGAAGACCTCCCAAAGCCATGGAGATCAGGCCTAACCTTGAGAATGCC
CAGATTTTCCAGCCCCCTAACGCAGCCGACAATGTCTCCAAGCTGGAGACTGATCCATCT
GCTGAAGCTATGGATGAAGTGCCCACAAACCGCAGACGGCTGAAGTACCGCCAACTAAAT
GGATCTGTATTCCAAAGCTTCAGACCACTTATGCTGAATCTGTATGAAAAGCCTTCGTCA
GAGGAGAAACTCGTCACAGGTGGCCACTCAAAAGTGCGTATATCTGTGAATGGTTCACCT
GAATCGGATACTGAAGAGAGAGATACCATGGTAGACACGTCCGTCAACATGGGCAAAGGC
AAGGTCGCTGTTCGCAAGAACAGACCAGTTTCTGAAGAAGCACTGTCACGTTCTTCAGAT
GCTCGGTCAGCTGGAAGCAGCAAGGGCTACAACTCCGAATTGGATGTCTACGTGGACGCA
TTAACCACGGTGGACTCTGAAGATTTCAATGCTCCAGAATCTGGAGCAAGAGAGCAGGCT
ACTGAAGAGCAGAGCTGCAATGGCAGTGCCACCGGTGCTGTATCAAATGGCACACAAGAT
ATTACTAAGAAGACCAAGGAAGTCAAGGAGAACTCTAACAAAATAGCAAGCAAGAGGTCC
AGATATGTCGGCAGCATGGCTGCAAAAGTTGGCATTCTGCCAAGGAAACTCTCCAAGAAG
CATGACCCTTTCTCTGATTCCCTCCGGTGCATGGCGAAGCAACTCCTTGAACTGAAGTAC
GATGGCACTAAAGATAGCGACTTATATGACTTTGAAGCAAACAGTGTGGGATGTGATGTC
AAGTATCAGGGAATTTCTGACCCTCCTGTTGAAATTAAGGAGAGTGACGTGCACAAATTT
CTGCCAGATTCATCCTATGATGATGTGGGTTCAAGAAAATGCCCGCAGGAAGAAATGAAC
CATGGGCAGGAGCATGATGCTCCACCTACTGACAGTCCACATGATTCAGTCCCTGATGAA
GGAAACGGATTTCAGGACCCCAACATGATCTACTTGGCAAGCATCATCACATCTTCCAGT
TCCCAAGAGGAAGAAGGATGTGCAAGTACTTCACTGCATGAGAATTCATCTATGGCAGTG
CTCAACCATATTTTGGAGCATGCTCAAGAGAAGTTTGAGGAACATCTTGACAAGGATGTG
AATGAGGACATTCATACAGAAGTCATTTCTGAAAATTCATCTGGCAAGTGTGAAGACTTG
AAAGAAGTCAGCATTTACTCAGAGCAGGTGAATGTGGAAGATATGGAGGAAAGCAATAAA
TCTGATGTATATGTGTTGGATGATGAAACAGCCGAGTACATAGAAGAGCAAGTAGTTTCA
GATGGTATGAACTCTTCACCGGTTTCATCCAAGCAATCAGATGATCCCTGCCGGATAACT
CCACTCGCCCTCGCAGATGAAGATGATACAGTGGCATGTAAGGTCATCGATAGCCCTGAA
GTGGATCATATTACATTATCAGAAACATTCACGGACATTGATCTACCTAATGTGGTAAAT
GAGTCAGTAATCAGCAGCGAACATGCCATGCCAGAAAATGAACAGTACTATTTCCATCCA
GAAACTACTTTTGGACAAGATCTGTGTCTCGACAACAATGAAATTGTAGGGGAAAATGGG
GAAGTTCCACTATGCAGCTCAACCACTGTGGCTATAACTCCTGAACCAACTGTAAACAGA
GAGATAGAACATGAGTTTCATCAAGCTGTGTATCAGGAACCATCGAATTCATTCAATAGC
AGTAAAGTTTTTGGAGATCCACTAGCTTCTGACTCCAGAGATGTTGCACCGTCAGTCATC
TCGAGCTTTGATTGGATGCTTAATGGTGCAATGCAGCAGTCATTCAATGTCTTTCCTTCT
CATCCAACTAATGGAAATGAACAAGAAAATGGTTCTTCTGAAGATGCGCCACCACTTCCT
CCTCTTCCACCGATGCAGTGGAGAACAAACAAGATACAGACATGCTCATCACCGTTATCT
GCAAAGATCGGGAGACCACCAAGGCCAAAACCTCCAGCAAAACAACAAGAAAGTGAAGCT
GCTCATATTCTTCAGGAGAACAATCTCCACAAAGGCTTGAGTTTGCAGAATGAAGTAGCG
CAGGCAACTATTTCTAGTGATCATGAGACAAATCAACTCCTTAACATGGATTTTCATGAA
AACCATCACCAGGAAGGAGATGAATATCATGCCCAGGATTCCAATCCATTTCCCTCGTCA
GAAGCTGAATGTTTGGCAGAAATTGATTCAGTAAAAAGTGAAAATCTGCACCCATTGCAG
CTACCTGAGCTTATAGTTGTTCCGGAAGAGGCATGGTCAGAGTTTGGTAATATAAAATTC
ATGCCAGAACAAGAAGGAAAACTCCAACTAAACAACGGACTTTCTGGTTTGGCAGCACAA
AAGACCAGCGGGAAGCCTGATTTGTTTGCATATTATAAGGAAAAGGAATTATCATTTGCA
GGTAGTGACAAAGTTGCAAATTCA

Peptide Sequence

PEP ID

Zm00001d047701_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:9:139521817:139526641:1 gene:Zm00001d047701 transcript:Zm00001d047701_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein SCAR2
Sequence

MPLSRHTVGNEYALGGRDLYRAADQHDPEDVLDGVAMAGLVGVLRQLGDLAEFAAQVFHG
LYDEVMSTSARGHGLMLRVQQLEAELPLLERDSCQRDYLHVASNRGVDWRSNPRVDQGVV
TRGDTPRFIMESIKQCRGPPKLFMLDKYDIGGEGACLKRYTDPSFFRTDSACSTLPHEEG
IRDERRPPKAMEIRPNLENAQIFQPPNAADNVSKLETDPSAEAMDEVPTNRRRLKYRQLN
GSVFQSFRPLMLNLYEKPSSEEKLVTGGHSKVRISVNGSPESDTEERDTMVDTSVNMGKG
KVAVRKNRPVSEEALSRSSDARSAGSSKGYNSELDVYVDALTTVDSEDFNAPESGAREQA
TEEQSCNGSATGAVSNGTQDITKKTKEVKENSNKIASKRSRYVGSMAAKVGILPRKLSKK
HDPFSDSLRCMAKQLLELKYDGTKDSDLYDFEANSVGCDVKYQGISDPPVEIKESDVHKF
LPDSSYDDVGSRKCPQEEMNHGQEHDAPPTDSPHDSVPDEGNGFQDPNMIYLASIITSSS
SQEEEGCASTSLHENSSMAVLNHILEHAQEKFEEHLDKDVNEDIHTEVISENSSGKCEDL
KEVSIYSEQVNVEDMEESNKSDVYVLDDETAEYIEEQVVSDGMNSSPVSSKQSDDPCRIT
PLALADEDDTVACKVIDSPEVDHITLSETFTDIDLPNVVNESVISSEHAMPENEQYYFHP
ETTFGQDLCLDNNEIVGENGEVPLCSSTTVAITPEPTVNREIEHEFHQAVYQEPSNSFNS
SKVFGDPLASDSRDVAPSVISSFDWMLNGAMQQSFNVFPSHPTNGNEQENGSSEDAPPLP
PLPPMQWRTNKIQTCSSPLSAKIGRPPRPKPPAKQQESEAAHILQENNLHKGLSLQNEVA
QATISSDHETNQLLNMDFHENHHQEGDEYHAQDSNPFPSSEAECLAEIDSVKSENLHPLQ
LPELIVVPEEAWSEFGNIKFMPEQEGKLQLNNGLSGLAAQKTSGKPDLFAYYKEKELSFA
GSDKVANS

Transcript Sequence

Transcript ID

Zm00001d047701_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:9:139521817:139526641:1 gene:Zm00001d047701 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein SCAR2
Sequence

GCCTCCCTCTCCCAGTTTCTCCCCCTCCCTATCTCTCTGTCCCTGCTTGCATTGCTCGTG
TTGACGCGCCTGCAAGTACGAGACAGCGAGCGGGAGGAAGAAGAAACAAAAAGGCCGGCC
CCCGATGCTAGCTCGCCGCAAGAGCACTACCACCACGCCAATCCATTGAGGCGGCTTCGT
TAGCGTAGCGGCGGCCGGCGGTGGAAGGAGGAGGCGTCGTCTCGAGGACTGCGCGCAATG
CCCCTGTCGCGGCACACGGTCGGGAACGAGTACGCGCTGGGTGGCCGCGACCTCTACCGC
GCGGCCGACCAGCACGACCCGGAGGACGTCCTCGATGGCGTCGCCATGGCCGGACTCGTC
GGCGTCCTCCGCCAGCTCGGCGACCTCGCCGAGTTTGCTGCACAGGTGTTCCACGGCCTG
TACGACGAGGTGATGAGCACGTCCGCGCGAGGGCACGGCCTCATGCTCCGGGTGCAGCAG
CTGGAGGCAGAGCTGCCGCTGCTGGAGAGAGACTCCTGCCAGAGAGACTACCTGCATGTC
GCTTCTAACAGGGGTGTCGATTGGCGTTCGAATCCGAGGGTCGACCAAGGGGTTGTCACG
AGAGGCGACACGCCTCGCTTCATCATGGAGTCAATCAAGCAGTGTCGCGGACCACCCAAG
CTCTTCATGCTCGACAAGTATGATATCGGCGGCGAGGGGGCGTGCTTGAAGAGATACACC
GACCCGTCTTTCTTCAGGACGGATTCCGCATGTTCCACCTTGCCGCATGAGGAAGGAATT
CGAGATGAAAGAAGACCTCCCAAAGCCATGGAGATCAGGCCTAACCTTGAGAATGCCCAG
ATTTTCCAGCCCCCTAACGCAGCCGACAATGTCTCCAAGCTGGAGACTGATCCATCTGCT
GAAGCTATGGATGAAGTGCCCACAAACCGCAGACGGCTGAAGTACCGCCAACTAAATGGA
TCTGTATTCCAAAGCTTCAGACCACTTATGCTGAATCTGTATGAAAAGCCTTCGTCAGAG
GAGAAACTCGTCACAGGTGGCCACTCAAAAGTGCGTATATCTGTGAATGGTTCACCTGAA
TCGGATACTGAAGAGAGAGATACCATGGTAGACACGTCCGTCAACATGGGCAAAGGCAAG
GTCGCTGTTCGCAAGAACAGACCAGTTTCTGAAGAAGCACTGTCACGTTCTTCAGATGCT
CGGTCAGCTGGAAGCAGCAAGGGCTACAACTCCGAATTGGATGTCTACGTGGACGCATTA
ACCACGGTGGACTCTGAAGATTTCAATGCTCCAGAATCTGGAGCAAGAGAGCAGGCTACT
GAAGAGCAGAGCTGCAATGGCAGTGCCACCGGTGCTGTATCAAATGGCACACAAGATATT
ACTAAGAAGACCAAGGAAGTCAAGGAGAACTCTAACAAAATAGCAAGCAAGAGGTCCAGA
TATGTCGGCAGCATGGCTGCAAAAGTTGGCATTCTGCCAAGGAAACTCTCCAAGAAGCAT
GACCCTTTCTCTGATTCCCTCCGGTGCATGGCGAAGCAACTCCTTGAACTGAAGTACGAT
GGCACTAAAGATAGCGACTTATATGACTTTGAAGCAAACAGTGTGGGATGTGATGTCAAG
TATCAGGGAATTTCTGACCCTCCTGTTGAAATTAAGGAGAGTGACGTGCACAAATTTCTG
CCAGATTCATCCTATGATGATGTGGGTTCAAGAAAATGCCCGCAGGAAGAAATGAACCAT
GGGCAGGAGCATGATGCTCCACCTACTGACAGTCCACATGATTCAGTCCCTGATGAAGGA
AACGGATTTCAGGACCCCAACATGATCTACTTGGCAAGCATCATCACATCTTCCAGTTCC
CAAGAGGAAGAAGGATGTGCAAGTACTTCACTGCATGAGAATTCATCTATGGCAGTGCTC
AACCATATTTTGGAGCATGCTCAAGAGAAGTTTGAGGAACATCTTGACAAGGATGTGAAT
GAGGACATTCATACAGAAGTCATTTCTGAAAATTCATCTGGCAAGTGTGAAGACTTGAAA
GAAGTCAGCATTTACTCAGAGCAGGTGAATGTGGAAGATATGGAGGAAAGCAATAAATCT
GATGTATATGTGTTGGATGATGAAACAGCCGAGTACATAGAAGAGCAAGTAGTTTCAGAT
GGTATGAACTCTTCACCGGTTTCATCCAAGCAATCAGATGATCCCTGCCGGATAACTCCA
CTCGCCCTCGCAGATGAAGATGATACAGTGGCATGTAAGGTCATCGATAGCCCTGAAGTG
GATCATATTACATTATCAGAAACATTCACGGACATTGATCTACCTAATGTGGTAAATGAG
TCAGTAATCAGCAGCGAACATGCCATGCCAGAAAATGAACAGTACTATTTCCATCCAGAA
ACTACTTTTGGACAAGATCTGTGTCTCGACAACAATGAAATTGTAGGGGAAAATGGGGAA
GTTCCACTATGCAGCTCAACCACTGTGGCTATAACTCCTGAACCAACTGTAAACAGAGAG
ATAGAACATGAGTTTCATCAAGCTGTGTATCAGGAACCATCGAATTCATTCAATAGCAGT
AAAGTTTTTGGAGATCCACTAGCTTCTGACTCCAGAGATGTTGCACCGTCAGTCATCTCG
AGCTTTGATTGGATGCTTAATGGTGCAATGCAGCAGTCATTCAATGTCTTTCCTTCTCAT
CCAACTAATGGAAATGAACAAGAAAATGGTTCTTCTGAAGATGCGCCACCACTTCCTCCT
CTTCCACCGATGCAGTGGAGAACAAACAAGATACAGACATGCTCATCACCGTTATCTGCA
AAGATCGGGAGACCACCAAGGCCAAAACCTCCAGCAAAACAACAAGAAAGTGAAGCTGCT
CATATTCTTCAGGAGAACAATCTCCACAAAGGCTTGAGTTTGCAGAATGAAGTAGCGCAG
GCAACTATTTCTAGTGATCATGAGACAAATCAACTCCTTAACATGGATTTTCATGAAAAC
CATCACCAGGAAGGAGATGAATATCATGCCCAGGATTCCAATCCATTTCCCTCGTCAGAA
GCTGAATGTTTGGCAGAAATTGATTCAGTAAAAAGTGAAAATCTGCACCCATTGCAGCTA
CCTGAGCTTATAGTTGTTCCGGAAGAGGCATGGTCAGAGTTTGGTAATATAAAATTCATG
CCAGAACAAGAAGGAAAACTCCAACTAAACAACGGACTTTCTGGTTTGGCAGCACAAAAG
ACCAGCGGGAAGCCTGATTTGTTTGCATATTATAAGGAAAAGGAATTATCATTTGCAGGT
AGTGACAAAGTTGCAAATTCAG