Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d047632_T002
CDS Infomation	cds chromosome:B73_RefGen_v4:9:137491101:137497732:-1 gene:Zm00001d047632 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:phytochromeB2 description:Phytochrome
Sequence	ATGGCGTCGGACAGTCGCCCCCCCAAGCGCTCCCCCTCCGCGCGACGCGTGGCGCCGCGT CACGCGCACCACCACCACTCGCAGTCGTCGGGCGGGAGCACGTCCCGCGCAGGCGCGGGA GGAGGTGGCGGGGGCGCTGCGGCCACGGAGTCGGTCTCCAAGGCCGTCGCTCAGTACAAC CTAGACGCGCGGCTCCACGCGGTGTTCGAGCAGTCGGGCGCGTCGGGCCGCAGCTTCGAC TACTCCCAGTCGCTGCGCGCGCCGCCCACGCCGTCCTCCGAGCAGCAGATCGCCGCCTAC CTCTCACGCATCCAGCGCGGCGGCCACATCCAGCCCTTGGGCTGCACGCTCGCCGTCGCC GACGACTCCTCCTTCCGCCTCCTCGCCTTCTCTGAGAACGCCGCCGACCTGCTCGACCTG TCGCCGCACCACTCCGTTCCCTCGCTCGACTCCGTGGCGCTGCCCCCTGTTTCCCTTGGT GCCGACGCACGCCTCTACTTCTCCCCCTCGTCCGCGGTCCTGCTGGAGCGCGCCTTCGCC GCGCGCGAGATATCGCTGCTCAACCCGCTATGGATCCACTCCAGGGCCTCCTCCAAGCCG TTCTACGCCATCCTCCACCGCATCGACGTCGGCGTCGTCATCGACCTCGAGCCCGCACGC ACCGAGGACCCCGCTCTCTCCATCGCCGGCGCAGTCCAGTCCCAGAAACTCGCGGTCCGC GCCATCTCCCGCCTCCAGGCGCTACCCGGCGGGGACGTCAAGCTCCTATGCGACACAGTC GTGGAGCATGTTCGCGAGCTCACTGGTTACGACCGTGTCATGGTGTACAAGTTCCATGAA GACGAGCACGGGGAAGTTGTCGCAGAGAGCCGGCGCGATAACCTTGAGCCTTACCTCGGA TTGCATTATCCCGCCACAGATATCCCCCAGGCGTCGCGGTTCCTGTTCCAGCAGAACCGC GTGCGAATGATCGCAGACTGCCATGCCATCCCGGTGAGAGTCATACAAGATCCTGGGCTG TCGCAGCAGCTGTGTTTGGTAGGCTCCACGCTACGCGCTCCGCACGGGTGCCATGCACAG TACATGGCGAACATGGGGTCAATTGCGTCGCTTGTTATGGCAGTCATCATTAGCAGTGGT GGTGACGACGAGCGAACAGGTCGGGGTGCCATCTCCTCATCAATGAAGTTGTGGGGGTTA GTGGTGTGCCACCATACATCACCACGGTGTATCCCTTTTCCATTGAGGTATGCTTGCGAG TTTCTCATGCAGGCATTTGGGCTGCAGCTCAACATGGAGTTGCAGCTTGCGCACCAGCTG TCAGAGAAGCACATTTTGCGAACTCAGACGCTATTGTGTGACATGCTACTGCGAGATTCA CCAGCTGGCATCATCACGCAGAGCCCCAGCGTCATGGACCTTGTGAAGTGCGATGGGGCT GCACTGTATTATCGTGGGAAGTACTACCCATTGGGTGTCACTCCCACCGAGTCTCAGATT AAGGATATTATCGAGTGGTTGACGGTGTGTCATGGGGACTCAACAGGGCTCAGCACAGAT AGCCTTGCTGATGCAGGCTACCTTGGTGCTGTTGCATTAGGGGATGCTGTGTGTGGAATG GCGGTGGCTTATATAACACCAAGTGATTACTTGTTTTGGTTTAGGTCACACACAGCTAAA GAGATCAAATGGGGTGGCGCAAAACATCACCCTGAGGATAAGGATGATGGTCAGAGGATG CACCCACGGTCATCATTCAAGGCATTTCTTGAAGTGGTTAAAAGCAGAAGCCTGTCCTGG GAGAATGCAGAAATGGACGCAATACATTCCTTGCAGCTCATATTGCGTGACTCCTTCAGA GATGCTGCAGAGGGCACTAGCAACTCAAAAGCCATTGTCAATGGACAACGTCAACTTGGG GAGCTAGAATTGCGGGGGATAAATGAGCTTAGCTCTGTAGCAAGAGAGATGGTTCGATTG ATAGAGACAGCAACAGTACCCATATTTGCAGTAGATACTGATGGATGCATAAATGGGTGG AATGCAAAGATTGCCGAGTTGACAGGCCTTTCAGTTGAGGAGGCAATGGGCAAATCTCTG GTAAATGATCTTATCTTCAAGGAATGTGATGATATAGTCGAAAAGCTACTCTCGCGAGCT TTAAGAGGTGAGGAAGACAAAAATGTGGAGATAAAGCTGAAGACATTTGGGTCAGAGCAA TCTAAGGGTGCAATATTTGTTATTGTCAATGCTTGTTCCAGCAGAGATTACACACAAAAT ATTGTTGGTGTCTGTTTTGTTGGACAAGATGTTACAGGACAAAAGGTGGTCATGGATAAA TTTATCAACATACAAGGGGACTACAAAGCTATTGTACACAATCCTAATCCTCTGCTACCC CCAATTTTCGCATCAGATGAGAACACTTCTTGTTCAGAATGGAACACAGCCATGGAAAAA CTTACAGGATGGTCTAGAGAGGAAGTTGTCGGTAAGTTTCTTATTGGAGAAGTGTTTGGA AATTGTTGCCGACTCAAGGGCCCAGATGCATTGACAAAGTTCATGGTTGTCATTCACAAT GCTATAGAAGGACATGATTCTGAGAAGTTCCCTTTTTCATTTTTCGACAAGAATGGAAAG TATGTGCAGGCCTTATTGACGGCCAACACAAGGAGCAAAATGGATGGTAAATCTATTGGA GCCTTTTGTTTCTTGCAGATTGCAAGCGCTGAAATACAGCAGGCATTTGAGATTCAGAGA CAACAAGAAAAGAAGTGTTATGCAAGGATGAAAGAATTGGCCTATATTTGCCAGGAGATA AAGAATCCTCTTAGTGGCATCCGGTTTACCAACTCTCTATTGCAGATGACTGATTTAAAT GATGACCAGAGGCAGTTCCTTGAAACTAGCTCTGCTTGTGAGAAACAGATGTCCAAGATT GTTAAGGATGCCAGTCTCAAAAGTATTGAGGATGGGTCAGCATTCTAA

Peptide Sequence

PEP ID	Zm00001d047632_P002
PEP Infomation	pep chromosome:B73_RefGen_v4:9:137491101:137497732:-1 gene:Zm00001d047632 transcript:Zm00001d047632_T002 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:phytochromeB2 description:Phytochrome
Sequence	MASDSRPPKRSPSARRVAPRHAHHHHSQSSGGSTSRAGAGGGGGGAAATESVSKAVAQYN LDARLHAVFEQSGASGRSFDYSQSLRAPPTPSSEQQIAAYLSRIQRGGHIQPLGCTLAVA DDSSFRLLAFSENAADLLDLSPHHSVPSLDSVALPPVSLGADARLYFSPSSAVLLERAFA AREISLLNPLWIHSRASSKPFYAILHRIDVGVVIDLEPARTEDPALSIAGAVQSQKLAVR AISRLQALPGGDVKLLCDTVVEHVRELTGYDRVMVYKFHEDEHGEVVAESRRDNLEPYLG LHYPATDIPQASRFLFQQNRVRMIADCHAIPVRVIQDPGLSQQLCLVGSTLRAPHGCHAQ YMANMGSIASLVMAVIISSGGDDERTGRGAISSSMKLWGLVVCHHTSPRCIPFPLRYACE FLMQAFGLQLNMELQLAHQLSEKHILRTQTLLCDMLLRDSPAGIITQSPSVMDLVKCDGA ALYYRGKYYPLGVTPTESQIKDIIEWLTVCHGDSTGLSTDSLADAGYLGAVALGDAVCGM AVAYITPSDYLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLSW ENAEMDAIHSLQLILRDSFRDAAEGTSNSKAIVNGQRQLGELELRGINELSSVAREMVRL IETATVPIFAVDTDGCINGWNAKIAELTGLSVEEAMGKSLVNDLIFKECDDIVEKLLSRA LRGEEDKNVEIKLKTFGSEQSKGAIFVIVNACSSRDYTQNIVGVCFVGQDVTGQKVVMDK FINIQGDYKAIVHNPNPLLPPIFASDENTSCSEWNTAMEKLTGWSREEVVGKFLIGEVFG NCCRLKGPDALTKFMVVIHNAIEGHDSEKFPFSFFDKNGKYVQALLTANTRSKMDGKSIG AFCFLQIASAEIQQAFEIQRQQEKKCYARMKELAYICQEIKNPLSGIRFTNSLLQMTDLN DDQRQFLETSSACEKQMSKIVKDASLKSIEDGSAF

Transcript Sequence

Transcript ID	Zm00001d047632_T002
Transcript Infomation	cdna chromosome:B73_RefGen_v4:9:137491101:137497732:-1 gene:Zm00001d047632 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:phytochromeB2 description:Phytochrome
Sequence	AAGACCGGCGGACGGGGCCGCCTAATCCAGTGAGAGCTCCCCCAAGCGCCATGGCGTCGG ACAGTCGCCCCCCCAAGCGCTCCCCCTCCGCGCGACGCGTGGCGCCGCGTCACGCGCACC ACCACCACTCGCAGTCGTCGGGCGGGAGCACGTCCCGCGCAGGCGCGGGAGGAGGTGGCG GGGGCGCTGCGGCCACGGAGTCGGTCTCCAAGGCCGTCGCTCAGTACAACCTAGACGCGC GGCTCCACGCGGTGTTCGAGCAGTCGGGCGCGTCGGGCCGCAGCTTCGACTACTCCCAGT CGCTGCGCGCGCCGCCCACGCCGTCCTCCGAGCAGCAGATCGCCGCCTACCTCTCACGCA TCCAGCGCGGCGGCCACATCCAGCCCTTGGGCTGCACGCTCGCCGTCGCCGACGACTCCT CCTTCCGCCTCCTCGCCTTCTCTGAGAACGCCGCCGACCTGCTCGACCTGTCGCCGCACC ACTCCGTTCCCTCGCTCGACTCCGTGGCGCTGCCCCCTGTTTCCCTTGGTGCCGACGCAC GCCTCTACTTCTCCCCCTCGTCCGCGGTCCTGCTGGAGCGCGCCTTCGCCGCGCGCGAGA TATCGCTGCTCAACCCGCTATGGATCCACTCCAGGGCCTCCTCCAAGCCGTTCTACGCCA TCCTCCACCGCATCGACGTCGGCGTCGTCATCGACCTCGAGCCCGCACGCACCGAGGACC CCGCTCTCTCCATCGCCGGCGCAGTCCAGTCCCAGAAACTCGCGGTCCGCGCCATCTCCC GCCTCCAGGCGCTACCCGGCGGGGACGTCAAGCTCCTATGCGACACAGTCGTGGAGCATG TTCGCGAGCTCACTGGTTACGACCGTGTCATGGTGTACAAGTTCCATGAAGACGAGCACG GGGAAGTTGTCGCAGAGAGCCGGCGCGATAACCTTGAGCCTTACCTCGGATTGCATTATC CCGCCACAGATATCCCCCAGGCGTCGCGGTTCCTGTTCCAGCAGAACCGCGTGCGAATGA TCGCAGACTGCCATGCCATCCCGGTGAGAGTCATACAAGATCCTGGGCTGTCGCAGCAGC TGTGTTTGGTAGGCTCCACGCTACGCGCTCCGCACGGGTGCCATGCACAGTACATGGCGA ACATGGGGTCAATTGCGTCGCTTGTTATGGCAGTCATCATTAGCAGTGGTGGTGACGACG AGCGAACAGGTCGGGGTGCCATCTCCTCATCAATGAAGTTGTGGGGGTTAGTGGTGTGCC ACCATACATCACCACGGTGTATCCCTTTTCCATTGAGGTATGCTTGCGAGTTTCTCATGC AGGCATTTGGGCTGCAGCTCAACATGGAGTTGCAGCTTGCGCACCAGCTGTCAGAGAAGC ACATTTTGCGAACTCAGACGCTATTGTGTGACATGCTACTGCGAGATTCACCAGCTGGCA TCATCACGCAGAGCCCCAGCGTCATGGACCTTGTGAAGTGCGATGGGGCTGCACTGTATT ATCGTGGGAAGTACTACCCATTGGGTGTCACTCCCACCGAGTCTCAGATTAAGGATATTA TCGAGTGGTTGACGGTGTGTCATGGGGACTCAACAGGGCTCAGCACAGATAGCCTTGCTG ATGCAGGCTACCTTGGTGCTGTTGCATTAGGGGATGCTGTGTGTGGAATGGCGGTGGCTT ATATAACACCAAGTGATTACTTGTTTTGGTTTAGGTCACACACAGCTAAAGAGATCAAAT GGGGTGGCGCAAAACATCACCCTGAGGATAAGGATGATGGTCAGAGGATGCACCCACGGT CATCATTCAAGGCATTTCTTGAAGTGGTTAAAAGCAGAAGCCTGTCCTGGGAGAATGCAG AAATGGACGCAATACATTCCTTGCAGCTCATATTGCGTGACTCCTTCAGAGATGCTGCAG AGGGCACTAGCAACTCAAAAGCCATTGTCAATGGACAACGTCAACTTGGGGAGCTAGAAT TGCGGGGGATAAATGAGCTTAGCTCTGTAGCAAGAGAGATGGTTCGATTGATAGAGACAG CAACAGTACCCATATTTGCAGTAGATACTGATGGATGCATAAATGGGTGGAATGCAAAGA TTGCCGAGTTGACAGGCCTTTCAGTTGAGGAGGCAATGGGCAAATCTCTGGTAAATGATC TTATCTTCAAGGAATGTGATGATATAGTCGAAAAGCTACTCTCGCGAGCTTTAAGAGGTG AGGAAGACAAAAATGTGGAGATAAAGCTGAAGACATTTGGGTCAGAGCAATCTAAGGGTG CAATATTTGTTATTGTCAATGCTTGTTCCAGCAGAGATTACACACAAAATATTGTTGGTG TCTGTTTTGTTGGACAAGATGTTACAGGACAAAAGGTGGTCATGGATAAATTTATCAACA TACAAGGGGACTACAAAGCTATTGTACACAATCCTAATCCTCTGCTACCCCCAATTTTCG CATCAGATGAGAACACTTCTTGTTCAGAATGGAACACAGCCATGGAAAAACTTACAGGAT GGTCTAGAGAGGAAGTTGTCGGTAAGTTTCTTATTGGAGAAGTGTTTGGAAATTGTTGCC GACTCAAGGGCCCAGATGCATTGACAAAGTTCATGGTTGTCATTCACAATGCTATAGAAG GACATGATTCTGAGAAGTTCCCTTTTTCATTTTTCGACAAGAATGGAAAGTATGTGCAGG CCTTATTGACGGCCAACACAAGGAGCAAAATGGATGGTAAATCTATTGGAGCCTTTTGTT TCTTGCAGATTGCAAGCGCTGAAATACAGCAGGCATTTGAGATTCAGAGACAACAAGAAA AGAAGTGTTATGCAAGGATGAAAGAATTGGCCTATATTTGCCAGGAGATAAAGAATCCTC TTAGTGGCATCCGGTTTACCAACTCTCTATTGCAGATGACTGATTTAAATGATGACCAGA GGCAGTTCCTTGAAACTAGCTCTGCTTGTGAGAAACAGATGTCCAAGATTGTTAAGGATG CCAGTCTCAAAAGTATTGAGGATGGGTCAGCATTCTAAGCTTTACCCTTATGCTCGCCCA TTCTCGAATATTTGCATTGAATATTTACATTTGATCATTCATATTCGTTTAACTTGAGCC TGGAGTAGCCTTAATCTAAATTTTAGTTGGTGCTAATCTTGACTGGTAGATACAGAATTG AAGTAGGAATTAAAGTTCATCAGTCATTAGACTGTCACAGTTTGTTCTACTGTCTTTGCA GTTCTTTAAATAAATATCCCCTTGAACCTAAGTTATTGCCTACATTAGACGAAGATCCTT GTTTTCTGTACTACCCTTTAAGACACTTTTGTTATTACCCCTTATGGTACTTGTGCTCTT GCTCGGACGATATTTGAAACTGTGTAAGATCAGCAACATTTGCCAACATATATTTTAGTT ATATGTTGCAAATATGAAGGCAGTTCAGATTTCTGTACTTTCAAAGATGCATTGGTGTTT TAGAAGCTTCAGCTTATCCTACTGTAGTACTGTGCTTAAAAGACTCCTATGGGTTTCCAT CTTTTTATTGGAAACGAAGTACCATATTATTGTACTGTACAGTGACTGGCGTGCGTCTGG CTGATTGTGTACATCATTATGGTTGTAACTGTCTAATGGTTGACGATATGGCTACTAAAC CAGGACCAAGCCAAAATTTGATGGTTTTCACAGTTCCCAGTGGAATTTGGTGAATCTGGT GTCTTTTTCTCTATTTTTTTCAAGTATAGCTAATAGCGTGGATATTAAACAAGTACATAT AATAATGCCTGCATATGCTGAATCGTTGAAATTGTGTAAAAATGTCAACTTCTGTACAAA CAAAAAACAGTGCATAGTGGGTGTTTTCTGCTTACCAATGTTAGCATACTGATTACTACC AGGATTGTGAACCTTTGTGCTTCAAATGCTATGTCATGATTTTTTGTTAGAATTAAAGGA ATATCCCTGTGAACTGATAACCTTACCACATTTTAGGAGGATGTCACCAAAGTTTAAGCA GCTTTGTCTAACATATCTCTGCCTGTAGTTTTGTTTGAGGAGCTTCATAAATTATTTGGA GATGCTGTATTTCATTTGCTTGCACCGAAACTCAAATCTTTTCTGGTTGATTTTTATACA CTTGATCAGGTCCATCTGTCTTATCTATCAATAATGACTGTGCATAGATTTTACCCCAGA AAATGGCTAACTTTTTTTTTGCACCACGGGCGAACTGAAAATTACAAAAGTGACTAACTT TGGCTTGTTCAACATAATACTTGATTCTCATCTGGTATAGCTACTTACACAATCTTATAG TATTACTGTCACTTTATTTGCTTGACTTAATTTCATTTAGGTTCATTGGTTCAGTGTTTA CACTGTAGATAATAGCATTTTTCACTTCTTTGTAACCTAAGACATAAGTTTGAATGTTGC TGTATTTTCCACAATTGGTAATTGAAAATTTGTTGATCTGTTTCTCTTTATGTAACAGCT CTTTGGTGCTTGAGAAAAGTGAGTTTTCTCTTGGAGACGTTATGAATGCTGTTGTCAGCC AAACAATGTCATTGTTGAGGGAGAGGGATTTACAACTTATTCGAGATATCCCTGATGAAA TCAAGGATGCATCAGCATATGGTGATCAATTTAGAATCCAACAAGTTTTGGCTGACTTCT TGCTAAGCATGGCACAGTCTGCTCCATCCGAGAATGGCTGGGTAGAAATACAAGTCAGAC CAAATGTAAAACAGAATTATGACGGAACAGATACAGAGCTTTTCATCTTCAGGTTTGCCT GCCCTGGTGAGGGCCTCCCCGCTGACATTGTCCAGGATATGTTCAGCAATTCCCAATGGT CAACCCAAGAAGGCGTAGGACTAAGCACATGCAGGAAAATCCTCAAATTGATGGGCGGCG AGGTCCAATACATCAGGGAGTCAGAGCGGAGTTTCTTCCTCATCGTCCTTGAGCTGCCCC AACCTCGTCTAGCAGCTGGTAGAGAAAATCAGCTGATATGTTAAGATCTGCGCTGACACC ACCTAACTTCTAGGTCGATTAGGTAACTTAGGTGGTGTTTGTTTGGGATTATAATCTGCC TAAATTATATAATCAGTGTTAGTTCAAAATAAGGTAGATTATATAATCTGGTCAGATTAT AATCCCAAACAAATAGACCCTTAGCTCCCTGATAAGAGGGTGCCTAATTTACAAGAAGCC TGGAAACAAATGAATGCTGCCATGGCAATTCAATGGTTGAGTGTTGATGAGGAGGCTGTT TTTCGGTGCGCCGCTGTAAGTTTGGGTATCCATGCTGTGGTTTCAAGATCAGAGTTCATG GCAGATAGTTATGTACACAGGCGGCAAATTTGGTTCTTAGCTTAGGTTGATGACCAGTTT CACTTAGTACATCTTATATGTATACTAGGTGGATGCCCGTGCGTTGCAACGGGAAGATAA AATATCACGATAACTCATG