Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d047494_T059
CDS Infomation

cds chromosome:B73_RefGen_v4:9:132493990:132525341:1 gene:Zm00001d047494 gene_biotype:protein_coding transcript_biotype:protein_coding description:AAA-type ATPase family protein
Sequence

ATGAAGAGAGTCATGGATTTGTCGGAGGATATATCGGAGAAGATAAAGAGAAGCAAGGAT
AGGTTGGCTGTGTTATTGAATAAGCCGGCTGCAGGCACCAGCAGGCGTCAGGAGCCCTGG
TGCAGACTAATTTCACAACATTCCATGCACCCTACCCTTTCTATTTACGGTGCGATTTTC
ACAATTGGTCATGGAGCGCATCATGATTTCAGACTGGATGAATCATCCACTGCCTCATCT
GTTTGTAGACTGAAGCAAGCTAAGCGAGGTGCACTCCTTGAAATCTTTGAATCCAAAGTT
GTTCGTGTAAACGGGAAATCTTTGGACAAGGCTGCCAAGGTTACCTTAAATGGAGGAGAT
GAAATTATCTTCTGTTCACCAGTGAGGCATGCTTATATATTTGAGCAACTTCATGAGGAG
AAATCAAGCACTTCAGTGTTATCTTCCACTTGCACTTGCAGTAGTATCCAGCTGGGGCAA
CACTCACATTTCAATGATATTCAGGATCATGTGTCATCTAAAGGGCGCAAAGCCTCATCC
TTTCTCTTTGGAAGAGGTCTATCAGCAGACCCACTTAATATATGTAAAACGACGGAGGGC
CGGAGCCAGTTTATCTCTGAAGATAATATATCATCTGGTCGGTGTCAGCTACTAAAGGAG
GATTTGATTAATGCAACGGTTGATGTGAGTGACATCTCTGAGTCATTTGATAGTTGCCCA
TATTATCTAAGTGAGCATACCAAACATGCTCTAATGTCAGCAGCATTTGTACATTTACAT
TGCAAGAACTACTTCAAGTTTACAAAAGATATATCTTCTCTTAGTCAACGAGTGCTGCTA
TCTGGCCCAACAGGAACTGATATGTATCAAGAATATCTGGTGAAGGCCCTTGCAAAGTAT
TTTGGTGCTAGATTGCTCACTATAGATTCTTCCATGCTGTTTGGTGGGCAAACTTCCAAG
GAATCAGAATCATACAAAAAGGGTGATAGAGTGAGGTATATTGGCTCAGGCATTATCCTT
GATGGACAGAGCCCTCCAGATTTTGGTTCACAGGGTGAAATATTTCTTCCTTTTGAAGAA
AACAGATCATCAAAGGTTGGTGTAAGGTTTGATAAAAAAATTCTGGGAGGAAACAATCTT
GGAGGCAATTGTGAAGTTGATCATGGTTTGTTCTGTTCTGTTGATTCTTTATGCCCCGAC
ATTCCAGGATGGGAGGTTACGTTCAAACATCCATTTGATGTGATAGTTGAGTTTATCTCT
GAAGAAATTCGGCATGGCCCTTTAATCCTTTTTCTGAAGGACACAGAGAAAATTTGTGGG
AATAATGATTCCTATCATGGTCTGAAGAGCAAGCTAAAACATTTTCCAGCTGGCGCTTTT
ATAATTGGATCTCAAATCCAGCCTGACAATCGCAAAGAGAAGGCAAATGTTAGTTCTCCT
TTTCTTTCGAAGTTCCGGTACAGCCAAGCTATACTTGGCCTCACATTACAGGACATTGAT
GGGGGAAATGATAATAATAAAGAAACATCAAAGGCAATAATGAAGCATTTGATCAAACTT
TTCCCGAATAAAGTGACACTTGAGGCACCACAAGCTGAAATGGAGCTTTCACGGTGGAAC
CAGATGTTAAACCGAGATATTGAAGTCCTTAAAGGAAATGCAAACATTTCAAAAATACGC
TCTTTTCTAACAAGGCTTGGATTGGAATGCACTGACCCTGAAGCGATATTGGTCACGGAT
CGCATTCTTACAAATGAGTGTATTGATAAAATAATTGGTTTTGCTTTGAGCCATCAACTT
AAGAACTGTACAAATCCAGACCCCCCTTTGGGTAGTGTGCAGTTTGCTCTATCCAGCGGA
AGTCTTAAGCATGGCGTTGACATGTTGAAAAGTATCCAGTCTGGCTCGAAGAGCAGCACC
AAAAGGAAATCACTTAAGGATATTGCTACTGAAAACGAATTTGAAAAGAGCCTTCTTGCT
GATGTCACCCCTCCACATGAAATTGGTGTTACCTTTGAGGACATTGGAGCTTTAGAAAGT
GTCAAAGATACTCTGAAGGAGTTGGTGATGCTTCCTTTGCAAAGACCCGAACTTTTCAAC
CGAGGACAACTTATGAAGCCATGTAAAGGAATTTTACTTTTTGGCCCACCTGGTACGGGG
AAGACAATGCTGGCTAAGGCTGTGGCAACTGAGGCTGGTGCTAATTTCATAAACATATCG
ATGTCAAGCATCTCTTCAAAGAATCTGTGTGTTACTGCTGCACACCGTCCTATTAGGGAG
ATTCTTGAAAAGGAAAAGAAGGAGAGAGCTTCAGCAGAAGCAGAAAATAGATCATTGCCT
CCGTCACACACTAGCAATGATGTCCGTGCATTAAGAACAAGTGATTTCATACATGCGCAT
GAACAGGTGTGTGCAAGTGTTCCCTCGGATTCCAGTAACATGAGCGAGCTTGTGCAATGG
AATGATCTCTATGGAGAAGGCGGATCAAGGAAAAAGACAACGCTAAGCTACTTCATGTAG

Peptide Sequence

PEP ID

Zm00001d047494_P059
PEP Infomation

pep chromosome:B73_RefGen_v4:9:132493990:132525341:1 gene:Zm00001d047494 transcript:Zm00001d047494_T059 gene_biotype:protein_coding transcript_biotype:protein_coding description:AAA-type ATPase family protein
Sequence

MKRVMDLSEDISEKIKRSKDRLAVLLNKPAAGTSRRQEPWCRLISQHSMHPTLSIYGAIF
TIGHGAHHDFRLDESSTASSVCRLKQAKRGALLEIFESKVVRVNGKSLDKAAKVTLNGGD
EIIFCSPVRHAYIFEQLHEEKSSTSVLSSTCTCSSIQLGQHSHFNDIQDHVSSKGRKASS
FLFGRGLSADPLNICKTTEGRSQFISEDNISSGRCQLLKEDLINATVDVSDISESFDSCP
YYLSEHTKHALMSAAFVHLHCKNYFKFTKDISSLSQRVLLSGPTGTDMYQEYLVKALAKY
FGARLLTIDSSMLFGGQTSKESESYKKGDRVRYIGSGIILDGQSPPDFGSQGEIFLPFEE
NRSSKVGVRFDKKILGGNNLGGNCEVDHGLFCSVDSLCPDIPGWEVTFKHPFDVIVEFIS
EEIRHGPLILFLKDTEKICGNNDSYHGLKSKLKHFPAGAFIIGSQIQPDNRKEKANVSSP
FLSKFRYSQAILGLTLQDIDGGNDNNKETSKAIMKHLIKLFPNKVTLEAPQAEMELSRWN
QMLNRDIEVLKGNANISKIRSFLTRLGLECTDPEAILVTDRILTNECIDKIIGFALSHQL
KNCTNPDPPLGSVQFALSSGSLKHGVDMLKSIQSGSKSSTKRKSLKDIATENEFEKSLLA
DVTPPHEIGVTFEDIGALESVKDTLKELVMLPLQRPELFNRGQLMKPCKGILLFGPPGTG
KTMLAKAVATEAGANFINISMSSISSKNLCVTAAHRPIREILEKEKKERASAEAENRSLP
PSHTSNDVRALRTSDFIHAHEQVCASVPSDSSNMSELVQWNDLYGEGGSRKKTTLSYFM

Transcript Sequence

Transcript ID

Zm00001d047494_T059
Transcript Infomation

cdna chromosome:B73_RefGen_v4:9:132493990:132525341:1 gene:Zm00001d047494 gene_biotype:protein_coding transcript_biotype:protein_coding description:AAA-type ATPase family protein
Sequence

GACTAATGATAAAGATTTATCGGCGAAGATGAAGAGAGTCATGGATTTGTCGGAGGATAT
ATCGGAGAAGATAAAGAGAAGCAAGGATAGGTTGGCTGTGTTATTGAATAAGCCGGCTGC
AGGCACCAGCAGGCGTCAGGAGCCCTGGTGCAGACTAATTTCACAACATTCCATGCACCC
TACCCTTTCTATTTACGGTGCGATTTTCACAATTGGTCATGGAGCGCATCATGATTTCAG
ACTGGATGAATCATCCACTGCCTCATCTGTTTGTAGACTGAAGCAAGCTAAGCGAGGTGC
ACTCCTTGAAATCTTTGAATCCAAAGTTGTTCGTGTAAACGGGAAATCTTTGGACAAGGC
TGCCAAGGTTACCTTAAATGGAGGAGATGAAATTATCTTCTGTTCACCAGTGAGGCATGC
TTATATATTTGAGCAACTTCATGAGGAGAAATCAAGCACTTCAGTGTTATCTTCCACTTG
CACTTGCAGTAGTATCCAGCTGGGGCAACACTCACATTTCAATGATATTCAGGATCATGT
GTCATCTAAAGGGCGCAAAGCCTCATCCTTTCTCTTTGGAAGAGGTCTATCAGCAGACCC
ACTTAATATATGTAAAACGACGGAGGGCCGGAGCCAGTTTATCTCTGAAGATAATATATC
ATCTGGTCGGTGTCAGCTACTAAAGGAGGATTTGATTAATGCAACGGTTGATGTGAGTGA
CATCTCTGAGTCATTTGATAGTTGCCCATATTATCTAAGTGAGCATACCAAACATGCTCT
AATGTCAGCAGCATTTGTACATTTACATTGCAAGAACTACTTCAAGTTTACAAAAGATAT
ATCTTCTCTTAGTCAACGAGTGCTGCTATCTGGCCCAACAGGAACTGATATGTATCAAGA
ATATCTGGTGAAGGCCCTTGCAAAGTATTTTGGTGCTAGATTGCTCACTATAGATTCTTC
CATGCTGTTTGGTGGGCAAACTTCCAAGGAATCAGAATCATACAAAAAGGGTGATAGAGT
GAGGTATATTGGCTCAGGCATTATCCTTGATGGACAGAGCCCTCCAGATTTTGGTTCACA
GGGTGAAATATTTCTTCCTTTTGAAGAAAACAGATCATCAAAGGTTGGTGTAAGGTTTGA
TAAAAAAATTCTGGGAGGAAACAATCTTGGAGGCAATTGTGAAGTTGATCATGGTTTGTT
CTGTTCTGTTGATTCTTTATGCCCCGACATTCCAGGATGGGAGGTTACGTTCAAACATCC
ATTTGATGTGATAGTTGAGTTTATCTCTGAAGAAATTCGGCATGGCCCTTTAATCCTTTT
TCTGAAGGACACAGAGAAAATTTGTGGGAATAATGATTCCTATCATGGTCTGAAGAGCAA
GCTAAAACATTTTCCAGCTGGCGCTTTTATAATTGGATCTCAAATCCAGCCTGACAATCG
CAAAGAGAAGGCAAATGTTAGTTCTCCTTTTCTTTCGAAGTTCCGGTACAGCCAAGCTAT
ACTTGGCCTCACATTACAGGACATTGATGGGGGAAATGATAATAATAAAGAAACATCAAA
GGCAATAATGAAGCATTTGATCAAACTTTTCCCGAATAAAGTGACACTTGAGGCACCACA
AGCTGAAATGGAGCTTTCACGGTGGAACCAGATGTTAAACCGAGATATTGAAGTCCTTAA
AGGAAATGCAAACATTTCAAAAATACGCTCTTTTCTAACAAGGCTTGGATTGGAATGCAC
TGACCCTGAAGCGATATTGGTCACGGATCGCATTCTTACAAATGAGTGTATTGATAAAAT
AATTGGTTTTGCTTTGAGCCATCAACTTAAGAACTGTACAAATCCAGACCCCCCTTTGGG
TAGTGTGCAGTTTGCTCTATCCAGCGGAAGTCTTAAGCATGGCGTTGACATGTTGAAAAG
TATCCAGTCTGGCTCGAAGAGCAGCACCAAAAGGAAATCACTTAAGGATATTGCTACTGA
AAACGAATTTGAAAAGAGCCTTCTTGCTGATGTCACCCCTCCACATGAAATTGGTGTTAC
CTTTGAGGACATTGGAGCTTTAGAAAGTGTCAAAGATACTCTGAAGGAGTTGGTGATGCT
TCCTTTGCAAAGACCCGAACTTTTCAACCGAGGACAACTTATGAAGCCATGTAAAGGAAT
TTTACTTTTTGGCCCACCTGGTACGGGGAAGACAATGCTGGCTAAGGCTGTGGCAACTGA
GGCTGGTGCTAATTTCATAAACATATCGATGTCAAGCATCTCTTCAAAGAATCTGTGTGT
TACTGCTGCACACCGTCCTATTAGGGAGATTCTTGAAAAGGAAAAGAAGGAGAGAGCTTC
AGCAGAAGCAGAAAATAGATCATTGCCTCCGTCACACACTAGCAATGATGTCCGTGCATT
AAGAACAAGTGATTTCATACATGCGCATGAACAGGTGTGTGCAAGTGTTCCCTCGGATTC
CAGTAACATGAGCGAGCTTGTGCAATGGAATGATCTCTATGGAGAAGGCGGATCAAGGAA
AAAGACAACGCTAAGCTACTTCATGTAGCTTAGGTTATAAATATATTGGGAGAAGTGCCC
TGGCACAAAGCAGCAATAGTTGGAGGCGGTGCAGTTGGAAAAAAAAAGCTATGCTCATCT
GCCAGACATCCATATCAAAGAGAATTGATGGTTCAGGTGGAGCGGAATAGAATGGAATGG
AATAGTATACATACACATGGTTGCTGCCTCTGCTCTGGGCCATGCATCATGCATCTGGAC
AGGACGGCTATCCTGGCTTGCAGTTGCCCTATGCAGTTTTGAGTGCAATGGTCACCATCT
GTGAAGCACGGATACCACAGAGATCCTGGCCCCAACCACTCTTTTCACAAATGGAGCTGA
GGACCTTTGGAGTTCTACCAAAAGTGATCTTAAATCTTTGTTCTTTGACTTTCCGTTTTG
TGAACGGAAGGCCCCACTCTGCTAGTATGGATTGTTGATCCTCCGTTTCTCTGGTACTGA
CTGAACTGCTCATACAAAACTCGTTCAACAGGCAGAAATGCTGCCTGGTGGCCTTCTAGA
GTGCTTCTTTGACGCCGCAGAGAGCACATCAAAAAATGTGTTTGTTTCGAACGATTTGTG
CTGCATTCCATTCACGGCGATATCAGGTGCCGTTGTTTGTGTTTGGTTCCGCAATCAAGG
GAGTGAAAGCCATTAGCACATCCAATCAAACAAATAGCGATATCTCTTTCACTGTACCAG
TTAGCGCTGGTCTCGGATGCTATTAACATTGCTGTTGTCTGTCTCGGAACCAAACACCGC
CTAACTCGTCGGCTGTTAAATATTTCTGAACTGAATTACTGCACTTGGTTGGGGTTTCAT
GCTTATCAAGTTGGCTTATATAGCCAACAATACTTTGTGCAGTTCTGCATCCTCTGCCTG
CTTATGCGCGATCTCATTGGCTGAGCGGTACGAAGATAAAACGGTAGCTAATCCGAAGCG
ATGGCTTCTCTTTTTCTTTCTACGGTATTTTGTCTCTATGAATTACAGTTACAGCAGTCA
GAACAGCTGATTTAAAACCGCAGCGAAAAGGCTGATTGCCTTGCCCATTTTTGGGTGGGT
GGAGGTTAATACAGATTTCTGTAATTTTTTTACTTTAATATTGTTTGACATATTGTG