Plant GARDEN
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TOP > About the Species(Zea mays ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d047476_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:9:131424109:131424987:1 gene:Zm00001d047476 gene_biotype:protein_coding transcript_biotype:protein_coding description:Probable E3 ubiquitin-protein ligase RHC1A
Sequence

ATGTCAGCTGGCAGGCAAGCATACTGGTGTTACCAGTGCCGACAGAGGGTGAGGCCACGG
GGCCGGGAGATGGTTTGTCCCTACTGCGATTCTGGGTTTGTGGCTGAAATGGATGATGTA
GATGCTCTCATGAGCCACTTCGTTGGGACGGATCCTGATTTCCATCGCGACCCACGGTTC
GGGATCATGGAGGCGATCTCCGCCGTGATGCGGCATGGTATGGCAGGGATGAACCGGGAG
GTTGATGTCAGAGGGAGGCCGAACTTCTTTTCAGACCTGGAGATGGAGTTCGGTTCAGGG
CCATGGCTGCTCTTCCGTGGCCAGCTCCCCGGCCACCTCACCGAGGACAACGGTTTCGAT
GTTTTCGTCAATGGACGACGTGGCGGCGGCGGCGGCGGCGGCGGCATGAGGAGGGCCAAC
ATCGCGGACTACTTCGTTGGCCCTGGACTGGATGATCTTATCGAGCAGTTGACCCAGAAT
GATCGCCGAGGACCACCACCTGCTGCACAGTCCTCGATCGACGCTATGCCCACAGTGAAG
ATCACCCAGAGGCATCTCAGTGGGGACTCGCACTGCCCTATCTGCAAGGAGAAGTTCGAG
ATGGGATCCGAAGAAGCAAGAGAGATGCCATGCAAGCACCTGTACCACTCCGACTGCATA
GTTCCTTGGTTAGAGCAGCACAATTCCTGCCCCGTTTGCCGTTACGAGCTCCCGCCACAG
GGCTCTGCCACCGGTGCTAGCTGCTCGCGCGCGAGATCAACCGACCAGAGCCAGAGCTCA
AGTAGTTCAAGCAGCAGCGGGAGAACCAGTGGGCGTCAAAGGAGAAGGAACCCGTTCTCG
TTCCTGTGGCCTTTCCGCTCATCAAGTAGTTCTCGCTAG

Peptide Sequence

PEP ID

Zm00001d047476_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:9:131424109:131424987:1 gene:Zm00001d047476 transcript:Zm00001d047476_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Probable E3 ubiquitin-protein ligase RHC1A
Sequence

MSAGRQAYWCYQCRQRVRPRGREMVCPYCDSGFVAEMDDVDALMSHFVGTDPDFHRDPRF
GIMEAISAVMRHGMAGMNREVDVRGRPNFFSDLEMEFGSGPWLLFRGQLPGHLTEDNGFD
VFVNGRRGGGGGGGGMRRANIADYFVGPGLDDLIEQLTQNDRRGPPPAAQSSIDAMPTVK
ITQRHLSGDSHCPICKEKFEMGSEEAREMPCKHLYHSDCIVPWLEQHNSCPVCRYELPPQ
GSATGASCSRARSTDQSQSSSSSSSSGRTSGRQRRRNPFSFLWPFRSSSSSR

Transcript Sequence

Transcript ID

Zm00001d047476_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:9:131424109:131424987:1 gene:Zm00001d047476 gene_biotype:protein_coding transcript_biotype:protein_coding description:Probable E3 ubiquitin-protein ligase RHC1A
Sequence

ATGTCAGCTGGCAGGCAAGCATACTGGTGTTACCAGTGCCGACAGAGGGTGAGGCCACGG
GGCCGGGAGATGGTTTGTCCCTACTGCGATTCTGGGTTTGTGGCTGAAATGGATGATGTA
GATGCTCTCATGAGCCACTTCGTTGGGACGGATCCTGATTTCCATCGCGACCCACGGTTC
GGGATCATGGAGGCGATCTCCGCCGTGATGCGGCATGGTATGGCAGGGATGAACCGGGAG
GTTGATGTCAGAGGGAGGCCGAACTTCTTTTCAGACCTGGAGATGGAGTTCGGTTCAGGG
CCATGGCTGCTCTTCCGTGGCCAGCTCCCCGGCCACCTCACCGAGGACAACGGTTTCGAT
GTTTTCGTCAATGGACGACGTGGCGGCGGCGGCGGCGGCGGCGGCATGAGGAGGGCCAAC
ATCGCGGACTACTTCGTTGGCCCTGGACTGGATGATCTTATCGAGCAGTTGACCCAGAAT
GATCGCCGAGGACCACCACCTGCTGCACAGTCCTCGATCGACGCTATGCCCACAGTGAAG
ATCACCCAGAGGCATCTCAGTGGGGACTCGCACTGCCCTATCTGCAAGGAGAAGTTCGAG
ATGGGATCCGAAGAAGCAAGAGAGATGCCATGCAAGCACCTGTACCACTCCGACTGCATA
GTTCCTTGGTTAGAGCAGCACAATTCCTGCCCCGTTTGCCGTTACGAGCTCCCGCCACAG
GGCTCTGCCACCGGTGCTAGCTGCTCGCGCGCGAGATCAACCGACCAGAGCCAGAGCTCA
AGTAGTTCAAGCAGCAGCGGGAGAACCAGTGGGCGTCAAAGGAGAAGGAACCCGTTCTCG
TTCCTGTGGCCTTTCCGCTCATCAAGTAGTTCTCGCTAG