Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d047453_T016
CDS Infomation

cds chromosome:B73_RefGen_v4:9:130694509:130708505:-1 gene:Zm00001d047453 gene_biotype:protein_coding transcript_biotype:protein_coding description:Villin-2
Sequence

ATGTCGAATGCAAAAGCGGTGCTTGAACCTGCATTTCAAGGAGCTGGCCATAAACCAGGA
ACAGAGATATGGAGGATCGAGGATTTCAAGCCAGTCCCTCTGCCAAAATCAGATTACGGC
AAATTCTACTGTGGGGATTCATACATAGTTCTGCAGACGACGTGCAAAGGAGGTGCTTAT
CTTTTCGATATCCACTTCTGGATCGGGAAGGATTCTAGCCAGGATGAAGCTGGAACCGCC
GCGATCAAGACGGTTGAACTCGACAGCATGCTTGGAGGTCGCGCGGTGCAGCACAGGGAA
CCACAGTGCTACGAGTCCGACAAATTCCTCTCGTATTTCAAGCCATGCATCATACCCATG
GAGGGTGGTTTTGCCTCTGGCTTTAAGAAGCCAGAAGTGGACAAGTTCGAAACGCGGCTG
TATATTTGCAAAGGGAAGAGAGCTATCAGAGTTAAAGAGGTTCCCTTTGCTCGCTCGTCG
TTGAACCATGACGATGTCTTTATCTTGGACACTGAAAATAAGATATATCAATTCAACGGC
GCCAACTCCAACATTCAGGAAAGAGCCAAAGCGTTGGAGGTGATCCAACATTTGAAGGAG
AAATACCATGACGGAGTGTGTGCTGTTGCAATTGTCGACGACGGGAAATTGCAAGCAGAA
TCAGATTCAGGAGAATTCTGGGTCGTTTTTGGAGGCTTTGCGCCAATAGGGAAGAAAGCA
GTAAGTGATGATGATGTTGTTCTTGAAACTACATCACCAAGGCTTTTCAGTATTAGTAAC
GGCCAACTGAAGTTAGAAGACACTGTTCTTACAAAATCAATTTTGGAGAATACCAAATGC
TTTTTACTTGACTGTGGGGCTGAGCTATTTGTGTGGGTTGGTCGGGTAACACAGGTAGAG
GACAGGAAAGCTGCCAGTGCGGCAGTTGAGAAATTCATTATTAAAGAAAATAGACCAAAG
ACAACAAGAATAACTCAAGTGATTCAAGGTTTTGAGAATCACACATTCAAGTCTAAGTTT
GAGTCATGGCCAGTAAGTAACACGGCAGGGAGTGCCAGCACGGAGGAAGGCCGAGGGAAA
GTTACAGCACTCTTGAAGCAGAAAGGTGTTGATGTCAAAGGAATATCAAAAACTAGTGTG
CCAGCAGTAAATGATGAAATTCCTCCACCTTTGCTAGATGGTGGTGGAAAGCTCGAGGTT
TGGTGTATTAATGACAGTGTGAAGATTGCTCTTCCAAAGGAAGAACTTGGAAAATTCTAC
AGTGGAGACTGTTATGTTGTTCTCTACACTTATCATTCTGTTGACAAAAAGGAAGAGTTC
TATCTAACTTACTGGATTGGGAAAAATAGTGTACAGGAAGATCAAGAGTCCGCTTTTCAA
ATAGCTAATACAACATGGAATTCTTTGAAAGGAAGACCTGTCCTGGGTCGCATTTATCAA
GGAAAAGAACCACCACAATTTGTTGCTCTTTTCCAGCCAATGGTTATTCTTAAGGGTGGT
ACCAGCTCTGGTTATAAGAAATATGTAGAAGAGAAGGGTCTGAAAGATGAAACATATTGT
TCTGATGGCGTCGCTCTCATTCAAATTTCTGGAACAGCAGTTCATAGCAATAAAACAATT
CAAGTTGATGCGGTCCCAGCATCCTTGAGTTCCACAGATTGTTTTGTTTTGCAATCTAAA
AACTCCATTTTTGTATGGAATGGAACTTCAAGTTCTGTTGAACAGCAACAGTGGGCTTCT
AAAGTTGCTGAATTTCTGAAGACCGGTGTTGCTGTCAAACATTGTAAGGAGGGCACTGAG
AGCTCTATTTTCTGGTCTTCTCTTGGTGGAAAGCAGAGTTATACAAGTAGAAATGTTGTA
CCTGATGTTGTTCTTAGAGAACCTCATTTGTATACCTTCTCTCTTAGGAATGGGAAGCTG
GAGGTTACTGAAATTTTCAATTTTTCACAAGATGATTTGTTGACCGAAGACATGATGATA
CTTGATACACACTCTGAGGTTTTTGTCTGGATGGGTCAGTGCGTG

Peptide Sequence

PEP ID

Zm00001d047453_P016
PEP Infomation

pep chromosome:B73_RefGen_v4:9:130694509:130708505:-1 gene:Zm00001d047453 transcript:Zm00001d047453_T016 gene_biotype:protein_coding transcript_biotype:protein_coding description:Villin-2
Sequence

MSNAKAVLEPAFQGAGHKPGTEIWRIEDFKPVPLPKSDYGKFYCGDSYIVLQTTCKGGAY
LFDIHFWIGKDSSQDEAGTAAIKTVELDSMLGGRAVQHREPQCYESDKFLSYFKPCIIPM
EGGFASGFKKPEVDKFETRLYICKGKRAIRVKEVPFARSSLNHDDVFILDTENKIYQFNG
ANSNIQERAKALEVIQHLKEKYHDGVCAVAIVDDGKLQAESDSGEFWVVFGGFAPIGKKA
VSDDDVVLETTSPRLFSISNGQLKLEDTVLTKSILENTKCFLLDCGAELFVWVGRVTQVE
DRKAASAAVEKFIIKENRPKTTRITQVIQGFENHTFKSKFESWPVSNTAGSASTEEGRGK
VTALLKQKGVDVKGISKTSVPAVNDEIPPPLLDGGGKLEVWCINDSVKIALPKEELGKFY
SGDCYVVLYTYHSVDKKEEFYLTYWIGKNSVQEDQESAFQIANTTWNSLKGRPVLGRIYQ
GKEPPQFVALFQPMVILKGGTSSGYKKYVEEKGLKDETYCSDGVALIQISGTAVHSNKTI
QVDAVPASLSSTDCFVLQSKNSIFVWNGTSSSVEQQQWASKVAEFLKTGVAVKHCKEGTE
SSIFWSSLGGKQSYTSRNVVPDVVLREPHLYTFSLRNGKLEVTEIFNFSQDDLLTEDMMI
LDTHSEVFVWMGQCV

Transcript Sequence

Transcript ID

Zm00001d047453_T016
Transcript Infomation

cdna chromosome:B73_RefGen_v4:9:130694509:130708505:-1 gene:Zm00001d047453 gene_biotype:protein_coding transcript_biotype:protein_coding description:Villin-2
Sequence

CAGTACATGAGTTTCTAGTGCCCTCCCTCCTCTCTCTAGTCATATTTCCGCGCAATGTCG
AATGCAAAAGCGGTGCTTGAACCTGCATTTCAAGGAGCTGGCCATAAACCAGGAACAGAG
ATATGGAGGATCGAGGATTTCAAGCCAGTCCCTCTGCCAAAATCAGATTACGGCAAATTC
TACTGTGGGGATTCATACATAGTTCTGCAGACGACGTGCAAAGGAGGTGCTTATCTTTTC
GATATCCACTTCTGGATCGGGAAGGATTCTAGCCAGGATGAAGCTGGAACCGCCGCGATC
AAGACGGTTGAACTCGACAGCATGCTTGGAGGTCGCGCGGTGCAGCACAGGGAACCACAG
TGCTACGAGTCCGACAAATTCCTCTCGTATTTCAAGCCATGCATCATACCCATGGAGGGT
GGTTTTGCCTCTGGCTTTAAGAAGCCAGAAGTGGACAAGTTCGAAACGCGGCTGTATATT
TGCAAAGGGAAGAGAGCTATCAGAGTTAAAGAGGTTCCCTTTGCTCGCTCGTCGTTGAAC
CATGACGATGTCTTTATCTTGGACACTGAAAATAAGATATATCAATTCAACGGCGCCAAC
TCCAACATTCAGGAAAGAGCCAAAGCGTTGGAGGTGATCCAACATTTGAAGGAGAAATAC
CATGACGGAGTGTGTGCTGTTGCAATTGTCGACGACGGGAAATTGCAAGCAGAATCAGAT
TCAGGAGAATTCTGGGTCGTTTTTGGAGGCTTTGCGCCAATAGGGAAGAAAGCAGTAAGT
GATGATGATGTTGTTCTTGAAACTACATCACCAAGGCTTTTCAGTATTAGTAACGGCCAA
CTGAAGTTAGAAGACACTGTTCTTACAAAATCAATTTTGGAGAATACCAAATGCTTTTTA
CTTGACTGTGGGGCTGAGCTATTTGTGTGGGTTGGTCGGGTAACACAGGTAGAGGACAGG
AAAGCTGCCAGTGCGGCAGTTGAGAAATTCATTATTAAAGAAAATAGACCAAAGACAACA
AGAATAACTCAAGTGATTCAAGGTTTTGAGAATCACACATTCAAGTCTAAGTTTGAGTCA
TGGCCAGTAAGTAACACGGCAGGGAGTGCCAGCACGGAGGAAGGCCGAGGGAAAGTTACA
GCACTCTTGAAGCAGAAAGGTGTTGATGTCAAAGGAATATCAAAAACTAGTGTGCCAGCA
GTAAATGATGAAATTCCTCCACCTTTGCTAGATGGTGGTGGAAAGCTCGAGGTTTGGTGT
ATTAATGACAGTGTGAAGATTGCTCTTCCAAAGGAAGAACTTGGAAAATTCTACAGTGGA
GACTGTTATGTTGTTCTCTACACTTATCATTCTGTTGACAAAAAGGAAGAGTTCTATCTA
ACTTACTGGATTGGGAAAAATAGTGTACAGGAAGATCAAGAGTCCGCTTTTCAAATAGCT
AATACAACATGGAATTCTTTGAAAGGAAGACCTGTCCTGGGTCGCATTTATCAAGGAAAA
GAACCACCACAATTTGTTGCTCTTTTCCAGCCAATGGTTATTCTTAAGGGTGGTACCAGC
TCTGGTTATAAGAAATATGTAGAAGAGAAGGGTCTGAAAGATGAAACATATTGTTCTGAT
GGCGTCGCTCTCATTCAAATTTCTGGAACAGCAGTTCATAGCAATAAAACAATTCAAGTT
GATGCGGTCCCAGCATCCTTGAGTTCCACAGATTGTTTTGTTTTGCAATCTAAAAACTCC
ATTTTTGTATGGAATGGAACTTCAAGTTCTGTTGAACAGCAACAGTGGGCTTCTAAAGTT
GCTGAATTTCTGAAGACCGGTGTTGCTGTCAAACATTGTAAGGAGGGCACTGAGAGCTCT
ATTTTCTGGTCTTCTCTTGGTGGAAAGCAGAGTTATACAAGTAGAAATGTTGTACCTGAT
GTTGTTCTTAGAGAACCTCATTTGTATACCTTCTCTCTTAGGAATGGGAAGCTGGAGGTT
ACTGAAATTTTCAATTTTTCACAAGATGATTTGTTGACCGAAGACATGATGATACTTGAT
ACACACTCTGAGGTTTTTGTCTGGATGGGTCAGTGCGTGG