Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d047428_T009
CDS Infomation

cds chromosome:B73_RefGen_v4:9:129721098:129737796:-1 gene:Zm00001d047428 gene_biotype:protein_coding transcript_biotype:protein_coding description:CDPK-related kinase 1
Sequence

ATGGGCCTCTGCTACGGCAAGTCGGCGGCGGTCCAGGAGCCGGCGGTAGCGGAGGAGAAC
AACAAAGCCGATGGCGCGGCGGCGGGCCGAGGCGATGGCCCGCCGGCGTCGCCGGTGAAG
GTGCCTCGGACGCCCAAGCAGCCCAAGTTGTCCTTCTACTTGCCGAGCCCGCTCCCGCCC
TCCAGCTACAAGGGCTCGCCGGCAAACTCCAGCGTCGCGTCCACGCCGGCGCGCGGCGGG
TTCAAGCGCCCGTTCCTGCCGCCGTCGCCTGCCAAGCACATTCGTGCGCTGCTGGCGCGG
CGCCACGGCTCGGTCAAGCCCAACGAGGCGTCCATCTCCGAGGGCGGCGAACCAGACCTT
GGGCTGGACAAGAGCTTCGGCTACTCCAGGCACTTTGCGGCCAAGTACGACCTTGGTCGA
GAGGTGGGGCGCGGCCACTTTGGCTTCACCTGCGCTGCCAAGTGCAAGAAGGGCGAGCTC
AAGGGCGAGGACGTCGCCGTCAAGGTCATTCCCAAGGCCAAGATGACTACTGCTATTGCC
ATTGAAGATGTCAGACGGGAAGTTAGAATATTGAGTTCTTTGGCAGACCACAACAACCTA
GTGCAGTTTCATGATGCTTTTGAGGATGAAGAAAATGTATATGTTGTTATGGAGTTATGC
AAAGGAGGTGAACTGCTGGACAGGATTTTGGCTAGAGGTGGAAAATATTCCGAGGAAGAT
GCTAAGGTTGTTATTCACCAAATTCTAAGTGTTGCTTCATTTTGCCATCTTCAGGGTGTT
GTTCACCGGGATCTGAAACCAGAGAATTTTCTTTTCATGTCAAAGGATGAGAATTCTGCC
TTGAAAGTCATAGACTTTGGTTTATCTGACTTTGTTAAACCAGACGGCAGACTTAATGAC
ATTGTTGGAAGTGCATATTATGTTGCTCCTGAAGTTCTCCATCGATCTTATGGCACTGAG
GCAGATATGTGGAGCATTGGAGTAATTGCATATATTTTGCTTTGTGGAAGCCGCCCTTTC
TGGGCAAGAACCGAGTCAGGAATTTTTAGAGCTGTCCTAAAAGCAGATCCTAGTTTTGAT
GAAATCCCATGGCCTACCCTTTCTGCTGAAGCGAAAGACTTCGTAAGGAGGCTGCTCAAT
AAGGATTACCGCAAGCGGATGACTGCTGCACAAGCCCTCTGTCATCCATGGATCCGTGGT
ACACAGGAAGTTAAGATTTATCTAGACATGATAATCTACAGGCTTATGAGGGCTTACATA
AGTTCATCTTCTCTACGGAAGTCTGCTTTGAGGGCTCTTGCAAAGGCACTGACGACAGAT
CAACTCTTCTACCTAAGAGAGCAGTTTACATTGTTAGATCCAAACAAGAGTGGCCATATA
TCCTTGCAAAATATGAAGGCGGCCTTGATGAAAAATTCCTCGGGTGCAATGAACGATTCT
AGGGTTCTTGACTTTGTTAACTCAATATGCAATATCCAATATGGAAATATTGATTTTGAA
GAGTTTTCTGCTGCGGCCATTAGTGTATATCAAATGGAAGGCCTGGAGACCTGGCAACAA
CATGCTCAACAAGCATATGAATTGTTTGACAGGGAGGGCAACCGACCGATTGTGATCGAA
GAACTTGCATCGGAGCTCGGACTTGGCCCTTCGGTTCCACTTCATGTTGTTCTCCAAGAC
TGGATCAGACATTCAGACGGAAACCTCAGTTTCCTCGGCTTCATAAAACTATTGCATGGA
GTTTCTTCACGCACAATCCCTAAAGTCCAAGATAACCGTTTGCATTGA

Peptide Sequence

PEP ID

Zm00001d047428_P009
PEP Infomation

pep chromosome:B73_RefGen_v4:9:129721098:129737796:-1 gene:Zm00001d047428 transcript:Zm00001d047428_T009 gene_biotype:protein_coding transcript_biotype:protein_coding description:CDPK-related kinase 1
Sequence

MGLCYGKSAAVQEPAVAEENNKADGAAAGRGDGPPASPVKVPRTPKQPKLSFYLPSPLPP
SSYKGSPANSSVASTPARGGFKRPFLPPSPAKHIRALLARRHGSVKPNEASISEGGEPDL
GLDKSFGYSRHFAAKYDLGREVGRGHFGFTCAAKCKKGELKGEDVAVKVIPKAKMTTAIA
IEDVRREVRILSSLADHNNLVQFHDAFEDEENVYVVMELCKGGELLDRILARGGKYSEED
AKVVIHQILSVASFCHLQGVVHRDLKPENFLFMSKDENSALKVIDFGLSDFVKPDGRLND
IVGSAYYVAPEVLHRSYGTEADMWSIGVIAYILLCGSRPFWARTESGIFRAVLKADPSFD
EIPWPTLSAEAKDFVRRLLNKDYRKRMTAAQALCHPWIRGTQEVKIYLDMIIYRLMRAYI
SSSSLRKSALRALAKALTTDQLFYLREQFTLLDPNKSGHISLQNMKAALMKNSSGAMNDS
RVLDFVNSICNIQYGNIDFEEFSAAAISVYQMEGLETWQQHAQQAYELFDREGNRPIVIE
ELASELGLGPSVPLHVVLQDWIRHSDGNLSFLGFIKLLHGVSSRTIPKVQDNRLH

Transcript Sequence

Transcript ID

Zm00001d047428_T009
Transcript Infomation

cdna chromosome:B73_RefGen_v4:9:129721098:129737796:-1 gene:Zm00001d047428 gene_biotype:protein_coding transcript_biotype:protein_coding description:CDPK-related kinase 1
Sequence

CCCCTCCCTTCTCACTCGGCGAGCTTTGTTGTTCACTTTGGATTCCACGGGTTTGTTTCG
GATTAGGAAGGCTCGGTTTTTGGTCTGGGAAGGCCCCCCTTCCGAGGCGATGAATTTGGT
GCGGGTTGATGGCGTCCTGTCAGGAGTCCGCTATGCAATGATGGGTTCTTTGAAGCCGAG
GTGAATCTTTGACCTGCCTAGTTTGCGATTCCAAATTCCGAGCTCCCACCGCTTCTTGAT
CCGCCGGGCGCCATGGGCCTCTGCTACGGCAAGTCGGCGGCGGTCCAGGAGCCGGCGGTA
GCGGAGGAGAACAACAAAGCCGATGGCGCGGCGGCGGGCCGAGGCGATGGCCCGCCGGCG
TCGCCGGTGAAGGTGCCTCGGACGCCCAAGCAGCCCAAGTTGTCCTTCTACTTGCCGAGC
CCGCTCCCGCCCTCCAGCTACAAGGGCTCGCCGGCAAACTCCAGCGTCGCGTCCACGCCG
GCGCGCGGCGGGTTCAAGCGCCCGTTCCTGCCGCCGTCGCCTGCCAAGCACATTCGTGCG
CTGCTGGCGCGGCGCCACGGCTCGGTCAAGCCCAACGAGGCGTCCATCTCCGAGGGCGGC
GAACCAGACCTTGGGCTGGACAAGAGCTTCGGCTACTCCAGGCACTTTGCGGCCAAGTAC
GACCTTGGTCGAGAGGTGGGGCGCGGCCACTTTGGCTTCACCTGCGCTGCCAAGTGCAAG
AAGGGCGAGCTCAAGGGCGAGGACGTCGCCGTCAAGGTCATTCCCAAGGCCAAGATGACT
ACTGCTATTGCCATTGAAGATGTCAGACGGGAAGTTAGAATATTGAGTTCTTTGGCAGAC
CACAACAACCTAGTGCAGTTTCATGATGCTTTTGAGGATGAAGAAAATGTATATGTTGTT
ATGGAGTTATGCAAAGGAGGTGAACTGCTGGACAGGATTTTGGCTAGAGGTGGAAAATAT
TCCGAGGAAGATGCTAAGGTTGTTATTCACCAAATTCTAAGTGTTGCTTCATTTTGCCAT
CTTCAGGGTGTTGTTCACCGGGATCTGAAACCAGAGAATTTTCTTTTCATGTCAAAGGAT
GAGAATTCTGCCTTGAAAGTCATAGACTTTGGTTTATCTGACTTTGTTAAACCAGACGGC
AGACTTAATGACATTGTTGGAAGTGCATATTATGTTGCTCCTGAAGTTCTCCATCGATCT
TATGGCACTGAGGCAGATATGTGGAGCATTGGAGTAATTGCATATATTTTGCTTTGTGGA
AGCCGCCCTTTCTGGGCAAGAACCGAGTCAGGAATTTTTAGAGCTGTCCTAAAAGCAGAT
CCTAGTTTTGATGAAATCCCATGGCCTACCCTTTCTGCTGAAGCGAAAGACTTCGTAAGG
AGGCTGCTCAATAAGGATTACCGCAAGCGGATGACTGCTGCACAAGCCCTCTGTCATCCA
TGGATCCGTGGTACACAGGAAGTTAAGATTTATCTAGACATGATAATCTACAGGCTTATG
AGGGCTTACATAAGTTCATCTTCTCTACGGAAGTCTGCTTTGAGGGCTCTTGCAAAGGCA
CTGACGACAGATCAACTCTTCTACCTAAGAGAGCAGTTTACATTGTTAGATCCAAACAAG
AGTGGCCATATATCCTTGCAAAATATGAAGGCGGCCTTGATGAAAAATTCCTCGGGTGCA
ATGAACGATTCTAGGGTTCTTGACTTTGTTAACTCAATATGCAATATCCAATATGGAAAT
ATTGATTTTGAAGAGTTTTCTGCTGCGGCCATTAGTGTATATCAAATGGAAGGCCTGGAG
ACCTGGCAACAACATGCTCAACAAGCATATGAATTGTTTGACAGGGAGGGCAACCGACCG
ATTGTGATCGAAGAACTTGCATCGGAGCTCGGACTTGGCCCTTCGGTTCCACTTCATGTT
GTTCTCCAAGACTGGATCAGACATTCAGACGGAAACCTCAGTTTCCTCGGCTTCATAAAA
CTATTGCATGGAGTTTCTTCACGCACAATCCCTAAAGTCCAAGATAACCGTTTGCATTGA
CCAATCCCTAATCTCAGGGCCAGTGCATGCCATGTCTGGCTGTAGAAGTTGCATGAGACC
ATCAGACCAGTACAAAGATTAACAGATCAGGTTAGGGTAAGAGGTAAAATTCTCTCAGTA
GTTGTATATTTGCTCCGCCCTTGTCCTCAAGATGTTAAGAGGAATGTACAGATTTG