Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d047306_T011
CDS Infomation

cds chromosome:B73_RefGen_v4:9:126193444:126203867:1 gene:Zm00001d047306 gene_biotype:protein_coding transcript_biotype:protein_coding description:Probable ubiquitin conjugation factor E4
Sequence

ATGGGGGAGCTGTACGAGCTTCTTAGGCAGAGCGTCGATAAAGTTTCGGCCCTCGGTGAC
TTCCAGCGCCCACTGCGGGTGCTCAGGCGGCTTGTGGGGATCCCCAATTGTGCCAAGGCC
CTGGTGAACCATCCCAAGTGGATACCAAAGAATCAGATCATGTTCATTGGGGAAGGGAGA
GTCATGGAGCTCTACAGTGTCCTTGGAGCCTTCTTCCATGTTAGTGCTATCCGAGACCGT
GAGTTTGCCAGCAAGCCTGATGTCGGGCAACAATGTTTCTCAGAAGCATCTTCACGTCGG
CCAGCCGACTTGTTGTCATCATTTACAACAATCAAGAGTGTTATGAATGGCTTGTATGAT
GGCCTTAAGGATATCCTTCTAACCCTCCTAAAAAATTTGGATACTCGAGAAAAGGTTCTT
GAGTATATAGCAGAAGTGATAAATAAAAACGCATCCAGATCTGGCATGCAGGTAGACCCA
TTAAAATGTGCAAGTTCAGGTATGTTTGTGAATCTTAGTGCTGTGATGCTCCGTCTATGC
GAGCCTTTTTTGGATAACATGGAATCAAAGAAGGATAAGATTGATGTCAAATACCTCTTT
TGCAACAATAGAATTGATTTCAAGGATTTGACAGCTATAAATGCGTCTTCAGAAGAAGTC
TCATCTTGGATAGAGAGCATAAATAACGAGCATGCTCAAAATAATGCCAGTGGAGAGGCT
CGTTTTGTGGAATCACAGGAAGCCACAAGCTCTGGCAAAAATAGTGCATCTTCACAACTT
CGGTGCTCAAAGAAGAACTTCTCATTTGTTTGCGAATGTTTCTTCATGACCTCAAGGGTA
CTTAATCTCGGTTTGATGAAAGCTATATCAGACTTCAAACATATTTCTCAGCAACTTGCA
AGGTTTGAAGATGATTTGGAGTCAAACAGAGCAGTCAGAGATCAGGGAGGGGGTTCACCA
CAGCTTGAACAAGATATAACTCGTTTGGAGAAGATTGTCGAGATTTTATCACAGGACAAA
TTATGTTATGAAGCTCAGATACTACGAGATGGTGCATTCCTTCAACGAGCATTATCTTTC
TACAGATTAATGATTCTGTGGTCAGTTAATCTAGTTGGCGGTTTTAAGATGCCTTTGCCA
TCACAATGCTCCAAGGAGTTTGCTTGCATTCCAGAACATTTTCTTGACGATGCAATGGAT
TTACTTGTTCTAACCTCTAGAATTCCAAAGGCTTTGGAAAGCTTTGATGACTTCCTCAGC
TTCATAATTATGTTCATGGGAAGCACATCTTACATTAAGAATCCTTACCTAAGAGCAAAG
ATGGTTGAAGTTTTGAATTGCTGGATGCCGCAAAGAAGTGGCTTGAGTTCTACAGCCTCG
TTGTTTGAGGGGCACCAACTGTGTCTTGACTATCTTGTTAGAAATCTTCTAAAGCTTTAT
GTGGATATTGAATTCACTGGTTCCCATACACAATTTTTTGACAAGTTTAACATTCGACAT
AATATTGCTGAGCTTCTGGAGTATTTATGGGATGTCCCCAGTCACCGAAACGCATGGAGA
CAAATAGCTAAAGAGGAGGAAAAGGGTGTATACTTAAATTTTCTTAACTTTCTCATCAAT
GATAGCATCTATCTTCTTGATGAGAGCTTGAACAAAATTTTGGAACTGAAAGAAATAGAG
GCTGAAATGACTAACACTGTTGAGTGGGAGCGCAGACCTGCTCAAGAAAGAGAGGAGCGG
CTCCGTGTATTTCATCAATGGGAAAATATTGTTCGATTTGACATGAGGCTAGCCAATGAG
GATGTTGGGATGCTTGCATTCACCTCGGAACAAATTCCAGCACCTTTCCTTCTCCCTGAA
ATGGTGGAAAGGGTCGCGAGCATGCTTAATTACTTCCTCTTGCAACTTGCTGGTCCCCAG
AGGAAATCTTTGACTGTAAAGGATCCAGAGAAGTACGAGTTCAAGCCGAAGCAGCTGTTG
AAACAGATTGCCACCATCTATGTCCATATCTCAAGGGGCGACAAGGAATCTGTCTTCCCA
GCTGCAATCTCGAAAGATGGCAGAGCATACAACGATCAGTTGTTTGCTAGTGCAGCTAAT
ATTCTGTGGAAGATTGGGGGTGATCCCAAAATCATACAGGAGTTTATGCAGCTTGCTGGT
AGGGCAAAAGCTGCTGCTTCTGAAGCTATGGATGCTGAGGCAATCCTTGGGGACATTCCA
GACGAATTCCTGGATCCAATTCAGTACACTCTGATGAAAGATCCTGTGACACTGCCATCA
TCGAAGGTCACAGTGGATCGGCCCGTAATTATCAGGCATCTGCTGAGTGATTCTACGGAT
CCATTTAACCGCTCCCACCTCACTCAAGACATGCTGATACCAAACACGGAGCTCAAGTTG
CAGATCGAGGAATTTGTCCAGTCCCAGCAGTTGAGAAAGCGAACTGCTGCGGTGTCAGAG
ATTGGCCAAGCGGATGGTGCTGATGATATGGCCGAATGA

Peptide Sequence

PEP ID

Zm00001d047306_P011
PEP Infomation

pep chromosome:B73_RefGen_v4:9:126193444:126203867:1 gene:Zm00001d047306 transcript:Zm00001d047306_T011 gene_biotype:protein_coding transcript_biotype:protein_coding description:Probable ubiquitin conjugation factor E4
Sequence

MGELYELLRQSVDKVSALGDFQRPLRVLRRLVGIPNCAKALVNHPKWIPKNQIMFIGEGR
VMELYSVLGAFFHVSAIRDREFASKPDVGQQCFSEASSRRPADLLSSFTTIKSVMNGLYD
GLKDILLTLLKNLDTREKVLEYIAEVINKNASRSGMQVDPLKCASSGMFVNLSAVMLRLC
EPFLDNMESKKDKIDVKYLFCNNRIDFKDLTAINASSEEVSSWIESINNEHAQNNASGEA
RFVESQEATSSGKNSASSQLRCSKKNFSFVCECFFMTSRVLNLGLMKAISDFKHISQQLA
RFEDDLESNRAVRDQGGGSPQLEQDITRLEKIVEILSQDKLCYEAQILRDGAFLQRALSF
YRLMILWSVNLVGGFKMPLPSQCSKEFACIPEHFLDDAMDLLVLTSRIPKALESFDDFLS
FIIMFMGSTSYIKNPYLRAKMVEVLNCWMPQRSGLSSTASLFEGHQLCLDYLVRNLLKLY
VDIEFTGSHTQFFDKFNIRHNIAELLEYLWDVPSHRNAWRQIAKEEEKGVYLNFLNFLIN
DSIYLLDESLNKILELKEIEAEMTNTVEWERRPAQEREERLRVFHQWENIVRFDMRLANE
DVGMLAFTSEQIPAPFLLPEMVERVASMLNYFLLQLAGPQRKSLTVKDPEKYEFKPKQLL
KQIATIYVHISRGDKESVFPAAISKDGRAYNDQLFASAANILWKIGGDPKIIQEFMQLAG
RAKAAASEAMDAEAILGDIPDEFLDPIQYTLMKDPVTLPSSKVTVDRPVIIRHLLSDSTD
PFNRSHLTQDMLIPNTELKLQIEEFVQSQQLRKRTAAVSEIGQADGADDMAE

Transcript Sequence

Transcript ID

Zm00001d047306_T011
Transcript Infomation

cdna chromosome:B73_RefGen_v4:9:126193444:126203867:1 gene:Zm00001d047306 gene_biotype:protein_coding transcript_biotype:protein_coding description:Probable ubiquitin conjugation factor E4
Sequence

GAGGTGGAGGACATCATCCTCCGCAAGATCCTTCTCGTCTCCCTCACGCCGCTGGCCAAC
CCCGGGCCCGCCGTCGCCTACCTCGAGCTCACCGCCGCCGAGCTCCTCTCCGAGTCGCGC
CCTCTCCTAGCTCTGCGCGACGCCGCCGAGCGCCTCCTTATAGACCGCCTCTCGCTCCCG
GACCCGCCCGCCGGGTCTCCGACCCCTTTCGCCTTCCTCGTCTCCGCTTTCCGCCGCGCC
GCCGACGAGGCGCGTAAGATCTCCACCATCCGCGACGCTGCTCTCCGGGCGCGCCTCGCG
GCCTCCATCGCGCACCTCCGGGCCCTCATTCTCTCCTACGCCCGTATCGTCGCCGGGAAC
CCCGACACCTTCCCCTCCCAACCCGGCGCGCAACACCCCGCCGCCGAACTCCTCGTATTC
CTCCTCGCTGAGGCAGCCGACCCGCTAGACCCCACCCCAGGCCCCGGGGCGCCGCCGCCG
CCTGGCTTCATTGATGAGTTCTTCAGCGGCGCTGACTATGACTCCATCGAGACGGCCATG
GGGGAGCTGTACGAGCTTCTTAGGCAGAGCGTCGATAAAGTTTCGGCCCTCGGTGACTTC
CAGCGCCCACTGCGGGTGCTCAGGCGGCTTGTGGGGATCCCCAATTGTGCCAAGGCCCTG
GTGAACCATCCCAAGTGGATACCAAAGAATCAGATCATGTTCATTGGGGAAGGGAGAGTC
ATGGAGCTCTACAGTGTCCTTGGAGCCTTCTTCCATGTTAGTGCTATCCGAGACCGTGAG
TTTGCCAGCAAGCCTGATGTCGGGCAACAATGTTTCTCAGAAGCATCTTCACGTCGGCCA
GCCGACTTGTTGTCATCATTTACAACAATCAAGAGTGTTATGAATGGCTTGTATGATGGC
CTTAAGGATATCCTTCTAACCCTCCTAAAAAATTTGGATACTCGAGAAAAGGTTCTTGAG
TATATAGCAGAAGTGATAAATAAAAACGCATCCAGATCTGGCATGCAGGTAGACCCATTA
AAATGTGCAAGTTCAGGTATGTTTGTGAATCTTAGTGCTGTGATGCTCCGTCTATGCGAG
CCTTTTTTGGATAACATGGAATCAAAGAAGGATAAGATTGATGTCAAATACCTCTTTTGC
AACAATAGAATTGATTTCAAGGATTTGACAGCTATAAATGCGTCTTCAGAAGAAGTCTCA
TCTTGGATAGAGAGCATAAATAACGAGCATGCTCAAAATAATGCCAGTGGAGAGGCTCGT
TTTGTGGAATCACAGGAAGCCACAAGCTCTGGCAAAAATAGTGCATCTTCACAACTTCGG
TGCTCAAAGAAGAACTTCTCATTTGTTTGCGAATGTTTCTTCATGACCTCAAGGGTACTT
AATCTCGGTTTGATGAAAGCTATATCAGACTTCAAACATATTTCTCAGCAACTTGCAAGG
TTTGAAGATGATTTGGAGTCAAACAGAGCAGTCAGAGATCAGGGAGGGGGTTCACCACAG
CTTGAACAAGATATAACTCGTTTGGAGAAGATTGTCGAGATTTTATCACAGGACAAATTA
TGTTATGAAGCTCAGATACTACGAGATGGTGCATTCCTTCAACGAGCATTATCTTTCTAC
AGATTAATGATTCTGTGGTCAGTTAATCTAGTTGGCGGTTTTAAGATGCCTTTGCCATCA
CAATGCTCCAAGGAGTTTGCTTGCATTCCAGAACATTTTCTTGACGATGCAATGGATTTA
CTTGTTCTAACCTCTAGAATTCCAAAGGCTTTGGAAAGCTTTGATGACTTCCTCAGCTTC
ATAATTATGTTCATGGGAAGCACATCTTACATTAAGAATCCTTACCTAAGAGCAAAGATG
GTTGAAGTTTTGAATTGCTGGATGCCGCAAAGAAGTGGCTTGAGTTCTACAGCCTCGTTG
TTTGAGGGGCACCAACTGTGTCTTGACTATCTTGTTAGAAATCTTCTAAAGCTTTATGTG
GATATTGAATTCACTGGTTCCCATACACAATTTTTTGACAAGTTTAACATTCGACATAAT
ATTGCTGAGCTTCTGGAGTATTTATGGGATGTCCCCAGTCACCGAAACGCATGGAGACAA
ATAGCTAAAGAGGAGGAAAAGGGTGTATACTTAAATTTTCTTAACTTTCTCATCAATGAT
AGCATCTATCTTCTTGATGAGAGCTTGAACAAAATTTTGGAACTGAAAGAAATAGAGGCT
GAAATGACTAACACTGTTGAGTGGGAGCGCAGACCTGCTCAAGAAAGAGAGGAGCGGCTC
CGTGTATTTCATCAATGGGAAAATATTGTTCGATTTGACATGAGGCTAGCCAATGAGGAT
GTTGGGATGCTTGCATTCACCTCGGAACAAATTCCAGCACCTTTCCTTCTCCCTGAAATG
GTGGAAAGGGTCGCGAGCATGCTTAATTACTTCCTCTTGCAACTTGCTGGTCCCCAGAGG
AAATCTTTGACTGTAAAGGATCCAGAGAAGTACGAGTTCAAGCCGAAGCAGCTGTTGAAA
CAGATTGCCACCATCTATGTCCATATCTCAAGGGGCGACAAGGAATCTGTCTTCCCAGCT
GCAATCTCGAAAGATGGCAGAGCATACAACGATCAGTTGTTTGCTAGTGCAGCTAATATT
CTGTGGAAGATTGGGGGTGATCCCAAAATCATACAGGAGTTTATGCAGCTTGCTGGTAGG
GCAAAAGCTGCTGCTTCTGAAGCTATGGATGCTGAGGCAATCCTTGGGGACATTCCAGAC
GAATTCCTGGATCCAATTCAGTACACTCTGATGAAAGATCCTGTGACACTGCCATCATCG
AAGGTCACAGTGGATCGGCCCGTAATTATCAGGCATCTGCTGAGTGATTCTACGGATCCA
TTTAACCGCTCCCACCTCACTCAAGACATGCTGATACCAAACACGGAGCTCAAGTTGCAG
ATCGAGGAATTTGTCCAGTCCCAGCAGTTGAGAAAGCGAACTGCTGCGGTGTCAGAGATT
GGCCAAGCGGATGGTGCTGATGATATGGCCGAATGAATTGTGCGAGCAGCAGGGATGGAC
ATTTTCTTTTGTGGTGGGGAAAGACGGATGCTAATTTACGCGAAATTTACCAGTTCATCG
GTCCGTATAAAATCGGTTTGCCAGCTTGTGTCACCATTTGTCTCCATTCTTTGTAAATGT
TGTAAGTGCAC