Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d047039_T001
CDS Infomation	cds chromosome:B73_RefGen_v4:9:116302972:116304549:-1 gene:Zm00001d047039 gene_biotype:protein_coding transcript_biotype:protein_coding description:nonsense-mediated mRNA decay NMD3 family protein
Sequence	ATGCAGCCCGGATCGGCCCCGGCGGCCGGCGGCACCGGCATGTTCGTGCCGGCGGCGACG GCTGGCACGGTGCTCTGCTGCATGTGCGGCGTGTCCATGCAGCCCAACCCGGCCAACATG TGCGCGCGCTGCCTGCGCGCGCGCGTCGACATCACCGAGGGCGTCCCGCGCCACGCCGCC GTGGTTTACTGCCCCGACTGCTCCTCCTACCTCCAGCCGCCGCGGTCCTGGCTCCGCGCC GCACCCGAGTCGCCCGAGCTCATGCAGATCCTGCTCCGCCGAATCAACCGCCCGCTCGCG CGGCTCCGCGTCTCCCTCTCCGGCGCCGAGTTCGTCTTCTCCGAGCCCCACTCCAAGCGC CTCCGCCTCAAGCTCCGCCTCCGCCGCGAGGTGCTCCACGGCATCGTCCTCGAGCAGACG CACCCAGTGGAGTTCGTCGTCCACGACCGGTTGTGCGACTCCTGCTCCCGCGCGCAGGCC AACCCCGACCAGTGGGTTGCCGTCGTCCAGCTGCGCCAGCACGTGCCCCACCGCCGCACT TTCCTCTACCTCGAGCAGCTCCTCCTCAAGCACGGCCAGGCTTCCCTCGCGATCCGAGTC GCGGCCGCCCCCGAAGGCCTCGACTTCTTCTTCGGCTCGCGCTCCCATGCCGCCCGCCTG GTCGACTTCGTCGCCACCGTCGCTCCTATCCAAACTCAGACAGCGAAGCAGCTCGTCTCG CACGACACCAAGAGCAGCGTCTACAATTACAAGTACACCTTTTCAGTCGAAATCTGCCCC ATCTGCCGCGAGGACCTCATCGCGCTCAGCCCCCAGGCGTCCCGGGACATGGGTGGCCTT GGCCCGCTCGTGCTCTGTGTCAAGGTCACAAATGCCATTGCTCTTCTTGACCCCCTCACG CTGCGAGTGCACCACCTGGAGGAGAAAAAATACAGGGTTTATAATTTCAAAGCAGCTCTC ACCAGCAAGCAGCTCGTGGAGTACATTGTGCTTGACATTGAACCAGAATCGCCTGAAATT TGCATCGATGGGTCTCGGTACCAGTTGGCTTATGCGCAGGTTGCCCGGATGTCAGATTTC GGGAAGAATGACGCCATCTTTACTGTGAGGACGCATCTTGGGCATCTGCTGAATCCTGGC GATCACGCCCTTGGGTATGATCTGTATGGTGCCAACCTGAATGATGATGACATGGACATG GCTATGACCCGGTACAGCTTACCTGAGGTGGTTCTTGTCAAGAAGAGCTATGAGAAGAGG CCTCGCACACGGCGATGGAAGCTTAAGAGGTTGCCGGTGGAGGAAGATGCTGCAAATAAG GCCAAGGGCGAGGAAGAGAAGAGGCTAGATGAGTACGAGGCTTTCCTCAGGGATTTGGAG GTGGACTCAGGGATGTGGTCCAAGATGAATCTGTACAAAAATGAGGACTATAGGTCTGAG ATGGCATCAACAGTTGGTGATGATATCCCTACGGTGCCAATTGAGGAGCTGATTGAGGAC TTGACCCTTGGTGACGATGAGGAGGATGAAGGGAAAGAAACTGTGGAAGGGAACACTCAT ACTGGAATGGTGGAATGA

Peptide Sequence

PEP ID	Zm00001d047039_P001
PEP Infomation	pep chromosome:B73_RefGen_v4:9:116302972:116304549:-1 gene:Zm00001d047039 transcript:Zm00001d047039_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:nonsense-mediated mRNA decay NMD3 family protein
Sequence	MQPGSAPAAGGTGMFVPAATAGTVLCCMCGVSMQPNPANMCARCLRARVDITEGVPRHAA VVYCPDCSSYLQPPRSWLRAAPESPELMQILLRRINRPLARLRVSLSGAEFVFSEPHSKR LRLKLRLRREVLHGIVLEQTHPVEFVVHDRLCDSCSRAQANPDQWVAVVQLRQHVPHRRT FLYLEQLLLKHGQASLAIRVAAAPEGLDFFFGSRSHAARLVDFVATVAPIQTQTAKQLVS HDTKSSVYNYKYTFSVEICPICREDLIALSPQASRDMGGLGPLVLCVKVTNAIALLDPLT LRVHHLEEKKYRVYNFKAALTSKQLVEYIVLDIEPESPEICIDGSRYQLAYAQVARMSDF GKNDAIFTVRTHLGHLLNPGDHALGYDLYGANLNDDDMDMAMTRYSLPEVVLVKKSYEKR PRTRRWKLKRLPVEEDAANKAKGEEEKRLDEYEAFLRDLEVDSGMWSKMNLYKNEDYRSE MASTVGDDIPTVPIEELIEDLTLGDDEEDEGKETVEGNTHTGMVE

Transcript Sequence

Transcript ID	Zm00001d047039_T001
Transcript Infomation	cdna chromosome:B73_RefGen_v4:9:116302972:116304549:-1 gene:Zm00001d047039 gene_biotype:protein_coding transcript_biotype:protein_coding description:nonsense-mediated mRNA decay NMD3 family protein
Sequence	ATGCAGCCCGGATCGGCCCCGGCGGCCGGCGGCACCGGCATGTTCGTGCCGGCGGCGACG GCTGGCACGGTGCTCTGCTGCATGTGCGGCGTGTCCATGCAGCCCAACCCGGCCAACATG TGCGCGCGCTGCCTGCGCGCGCGCGTCGACATCACCGAGGGCGTCCCGCGCCACGCCGCC GTGGTTTACTGCCCCGACTGCTCCTCCTACCTCCAGCCGCCGCGGTCCTGGCTCCGCGCC GCACCCGAGTCGCCCGAGCTCATGCAGATCCTGCTCCGCCGAATCAACCGCCCGCTCGCG CGGCTCCGCGTCTCCCTCTCCGGCGCCGAGTTCGTCTTCTCCGAGCCCCACTCCAAGCGC CTCCGCCTCAAGCTCCGCCTCCGCCGCGAGGTGCTCCACGGCATCGTCCTCGAGCAGACG CACCCAGTGGAGTTCGTCGTCCACGACCGGTTGTGCGACTCCTGCTCCCGCGCGCAGGCC AACCCCGACCAGTGGGTTGCCGTCGTCCAGCTGCGCCAGCACGTGCCCCACCGCCGCACT TTCCTCTACCTCGAGCAGCTCCTCCTCAAGCACGGCCAGGCTTCCCTCGCGATCCGAGTC GCGGCCGCCCCCGAAGGCCTCGACTTCTTCTTCGGCTCGCGCTCCCATGCCGCCCGCCTG GTCGACTTCGTCGCCACCGTCGCTCCTATCCAAACTCAGACAGCGAAGCAGCTCGTCTCG CACGACACCAAGAGCAGCGTCTACAATTACAAGTACACCTTTTCAGTCGAAATCTGCCCC ATCTGCCGCGAGGACCTCATCGCGCTCAGCCCCCAGGCGTCCCGGGACATGGGTGGCCTT GGCCCGCTCGTGCTCTGTGTCAAGGTCACAAATGCCATTGCTCTTCTTGACCCCCTCACG CTGCGAGTGCACCACCTGGAGGAGAAAAAATACAGGGTTTATAATTTCAAAGCAGCTCTC ACCAGCAAGCAGCTCGTGGAGTACATTGTGCTTGACATTGAACCAGAATCGCCTGAAATT TGCATCGATGGGTCTCGGTACCAGTTGGCTTATGCGCAGGTTGCCCGGATGTCAGATTTC GGGAAGAATGACGCCATCTTTACTGTGAGGACGCATCTTGGGCATCTGCTGAATCCTGGC GATCACGCCCTTGGGTATGATCTGTATGGTGCCAACCTGAATGATGATGACATGGACATG GCTATGACCCGGTACAGCTTACCTGAGGTGGTTCTTGTCAAGAAGAGCTATGAGAAGAGG CCTCGCACACGGCGATGGAAGCTTAAGAGGTTGCCGGTGGAGGAAGATGCTGCAAATAAG GCCAAGGGCGAGGAAGAGAAGAGGCTAGATGAGTACGAGGCTTTCCTCAGGGATTTGGAG GTGGACTCAGGGATGTGGTCCAAGATGAATCTGTACAAAAATGAGGACTATAGGTCTGAG ATGGCATCAACAGTTGGTGATGATATCCCTACGGTGCCAATTGAGGAGCTGATTGAGGAC TTGACCCTTGGTGACGATGAGGAGGATGAAGGGAAAGAAACTGTGGAAGGGAACACTCAT ACTGGAATGGTGGAATGA