Plant GARDEN
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TOP > About the Species(Zea mays ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d046998_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:9:114745284:114746117:-1 gene:Zm00001d046998 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5
Sequence

ATGCAGATGCAGGTCGGAGGAGGCGCGGCCGACAGCCCGGGCGCTGCGGCGGCGGCGGGC
GCGGAGGCGCCGCGCCCGAGCCGCTACGAGTCGCAGAAGCGGCGGGACTGGCACACGTTC
GGGCAGTACCTGCGCAACCACCGGCCGCCGCTGGAGCTGGCGCGGTGCAGCGGCGCGCAC
GTGCTCGAGTTCCTGCGCTACCTCGACCAGTTCGGCAAGACCAAGGTCCACGCGCCGGGG
TGCCCCTTCTTCGGCCACCCGTCGCCGCCCGCGCCGTGCCCGTGCCCACTGCGGCAGGCC
TGGGGCAGCCTTGACGCGCTCATCGGCCGCCTGCGCGCCGCCTTCGAGGAGCACGGGGGC
CGGCCCGAGGCCAACCCCTTCGGCGCCCGCGCCGTGCGCCTCTACCTCCGCGAGGTCCGC
GACAGCCAGGCCAAGGCGCGCGGCATCGCCTACGAGAAGAAGCGCCGGAAGCGGCCGTCC
GCCTCGTCCCAGTCGTCGCCGCAGGCCGCGACGACCCCGCCGTTGCAGGCCCCTCCCGTC
TCCACGCCGGCCCTCTCGGACGCGGCGGCCGAGAGGGCCGACGTGCGGGCGCACGTCCCC
GACGCCGGGCACGGGCACCAGCACCACTTCTTCATGCCACACCCGCAGTTCCTGCACGGG
TTCCGACTGCTGCCAGGCAACCCCGAAGCGGTGGCTGGCAATGGTAATGGCGATGGCAGC
AGCAGCAGCGCTAGCGTCGCTGCCGGCAGCGGGGACGAGATAGCGCTGGCGATGGCGGCG
GCGGCGGAAGCGCACGCGGCGGGGTGCATGCTGCCGCTGTCGGTGTTCAACTAG

Peptide Sequence

PEP ID

Zm00001d046998_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:9:114745284:114746117:-1 gene:Zm00001d046998 transcript:Zm00001d046998_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5
Sequence

MQMQVGGGAADSPGAAAAAGAEAPRPSRYESQKRRDWHTFGQYLRNHRPPLELARCSGAH
VLEFLRYLDQFGKTKVHAPGCPFFGHPSPPAPCPCPLRQAWGSLDALIGRLRAAFEEHGG
RPEANPFGARAVRLYLREVRDSQAKARGIAYEKKRRKRPSASSQSSPQAATTPPLQAPPV
STPALSDAAAERADVRAHVPDAGHGHQHHFFMPHPQFLHGFRLLPGNPEAVAGNGNGDGS
SSSASVAAGSGDEIALAMAAAAEAHAAGCMLPLSVFN

Transcript Sequence

Transcript ID

Zm00001d046998_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:9:114745284:114746117:-1 gene:Zm00001d046998 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5
Sequence

ATGCAGATGCAGGTCGGAGGAGGCGCGGCCGACAGCCCGGGCGCTGCGGCGGCGGCGGGC
GCGGAGGCGCCGCGCCCGAGCCGCTACGAGTCGCAGAAGCGGCGGGACTGGCACACGTTC
GGGCAGTACCTGCGCAACCACCGGCCGCCGCTGGAGCTGGCGCGGTGCAGCGGCGCGCAC
GTGCTCGAGTTCCTGCGCTACCTCGACCAGTTCGGCAAGACCAAGGTCCACGCGCCGGGG
TGCCCCTTCTTCGGCCACCCGTCGCCGCCCGCGCCGTGCCCGTGCCCACTGCGGCAGGCC
TGGGGCAGCCTTGACGCGCTCATCGGCCGCCTGCGCGCCGCCTTCGAGGAGCACGGGGGC
CGGCCCGAGGCCAACCCCTTCGGCGCCCGCGCCGTGCGCCTCTACCTCCGCGAGGTCCGC
GACAGCCAGGCCAAGGCGCGCGGCATCGCCTACGAGAAGAAGCGCCGGAAGCGGCCGTCC
GCCTCGTCCCAGTCGTCGCCGCAGGCCGCGACGACCCCGCCGTTGCAGGCCCCTCCCGTC
TCCACGCCGGCCCTCTCGGACGCGGCGGCCGAGAGGGCCGACGTGCGGGCGCACGTCCCC
GACGCCGGGCACGGGCACCAGCACCACTTCTTCATGCCACACCCGCAGTTCCTGCACGGG
TTCCGACTGCTGCCAGGCAACCCCGAAGCGGTGGCTGGCAATGGTAATGGCGATGGCAGC
AGCAGCAGCGCTAGCGTCGCTGCCGGCAGCGGGGACGAGATAGCGCTGGCGATGGCGGCG
GCGGCGGAAGCGCACGCGGCGGGGTGCATGCTGCCGCTGTCGGTGTTCAACTAG