Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d046995_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:9:114408410:114410512:1 gene:Zm00001d046995 gene_biotype:protein_coding transcript_biotype:protein_coding description:Patellin-5

Sequence

ATGGCCGTGGAGGCTGTTTCCGGAAATGGCACCGAGGCGGTGGCCGCGGCGCCGGCGAAG
GAGGTGAGCACCAAGCAGGCGTCTTTCCGGGAGGAGAGCAACTTCCTGGACGATCTCAAG
GAGAGCGAGCGTAAGGCGCTCGCCGAGCTCCGCGACAAGGTCGAGGCGGCCATCGTGGAG
GGCAAGCTGTTCGACGACGGTAAGCCGGAGGTGAAGGAGAAGGAGGAGGCCAAGAAGAAG
GCCGCGGAGAAGAAAGATGAGCAGCCCGAAGCCGAGGAGAAGGGAGAGGAGGATGGCAAG
AAGGAGGCCGACGCCGAGGAGGAGAAGAAGGAAGGCGTGGAGGGAGGGGAGAAGAAGGAA
GGCCAGGAGGAAGGGGAGAAGGAGGAGGCCGAGGAGGAGAGCGGAGACGACACCAAGCAG
GAGGCCAAGAAAGAGGAAGCCGGCGAGAAGGCGGCGGCGAAGGAGCCGGAGACGGCGGCC
GTTGTCGTCGACAAGGACATCGCGCTGTGGGGCGTGCCTCTGCTCCCTAGCAAGGGCGAC
GAGGCCACCGACGTGGTGCTCCTCAAGTTCCTCCGCGCGCGCGACTTCAAGGCCGGCGCC
GCGTTCGAGATGCTCCGCCGCACGCTCCGCTGGCGCAGGGACTGGACCGGCTTCGGCTCC
GGCGCCGAGTGCGACGCCGACGCCGACCTCCCCGAGGAGCTCGCGGGCGCGTGCTACCTC
GACGGCGCGGACCACGAGGGCCACCCGGTGTGCTACAACGCGCTGGGCGTGTTCGCGGAC
GACGCCGTGTACAAGAAGGCGCTGGGCACCGAGGAAGGCAAGGCCAGGTTCCTCCGGTGG
CGGGTGCGCGCCATGGAGCGCCACGTCGCCGAGCTGGACCTGAGGCCCGGCGGCGTCGCG
TCGCTGCTGCAGGTGATCGACCTCAGGAACTCGCCGGGGCCGGCCAAGAAGGACTTCCGC
GTCGCCGTCAAGCAGGTGCTCGACCTGTTCCAGGACAACTACCCCGAGCTCGTCGCGAGA
AACATCTTGATCAACGTGCCGTTCTGGTACTACGCGTTCAGCACCCTGTTCTACCCGTTC
CTGACGCAGAGGACGAAGAGCAAGTTCGTCGTTGCTCGCCCGTCCAAGGTCACCGAGACC
CTCCTCAACTTTTTGACGAGCATCGTACACCTTTTCCGAAGGTACATTCCGATCGAGGCC
ATCCCGGTGAAGTACGGCGGCCTGAAGCGCGACGGCGACACCGAGTTCTCCGCGGACGAC
GGCGAGGTCGCGGAGGTCACCGTCAAGGGAAGCTCCACGGAGACCATCGAGATCGAAGCC
ACTGAGGCTGATGCCACGCTGACATGGGACCTGACGGTGCTGGGGTGGGAGGTGAACTAC
AAGGAGGAGTTCGTGCCGGCGGACGAGGGCTCCTACACCATCATCGTCAGGAAGGGCAAG
AAGATGGCGTCCGGCGAGGAGGCGGTCCGCAACTCGTTCCGCACCGGTGAGCCGGGCAAG
GTCGTGCTCACCGTCCAGAACACCTCGCACAGGAAGAAGAAGGTGCTGTTCAGGCACAAG
GCCAAGAGCGCCTGCGCCAAGAAGTGCTGA

Peptide Sequence

PEP ID

Zm00001d046995_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:9:114408410:114410512:1 gene:Zm00001d046995 transcript:Zm00001d046995_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Patellin-5

Sequence

MAVEAVSGNGTEAVAAAPAKEVSTKQASFREESNFLDDLKESERKALAELRDKVEAAIVE
GKLFDDGKPEVKEKEEAKKKAAEKKDEQPEAEEKGEEDGKKEADAEEEKKEGVEGGEKKE
GQEEGEKEEAEEESGDDTKQEAKKEEAGEKAAAKEPETAAVVVDKDIALWGVPLLPSKGD
EATDVVLLKFLRARDFKAGAAFEMLRRTLRWRRDWTGFGSGAECDADADLPEELAGACYL
DGADHEGHPVCYNALGVFADDAVYKKALGTEEGKARFLRWRVRAMERHVAELDLRPGGVA
SLLQVIDLRNSPGPAKKDFRVAVKQVLDLFQDNYPELVARNILINVPFWYYAFSTLFYPF
LTQRTKSKFVVARPSKVTETLLNFLTSIVHLFRRYIPIEAIPVKYGGLKRDGDTEFSADD
GEVAEVTVKGSSTETIEIEATEADATLTWDLTVLGWEVNYKEEFVPADEGSYTIIVRKGK
KMASGEEAVRNSFRTGEPGKVVLTVQNTSHRKKKVLFRHKAKSACAKKC

Transcript Sequence

Transcript ID

Zm00001d046995_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:9:114408410:114410512:1 gene:Zm00001d046995 gene_biotype:protein_coding transcript_biotype:protein_coding description:Patellin-5

Sequence

TCCCACTCCTCTCTCTCTCGCGCTCTCTCTCTTTCATCGCCACCACCGCCGTGAAATCCG
CACGCGTGCTTCCTGTCGATTTTTGAGCTGTGACTGTGACCGCCATGGCCGTGGAGGCTG
TTTCCGGAAATGGCACCGAGGCGGTGGCCGCGGCGCCGGCGAAGGAGGTGAGCACCAAGC
AGGCGTCTTTCCGGGAGGAGAGCAACTTCCTGGACGATCTCAAGGAGAGCGAGCGTAAGG
CGCTCGCCGAGCTCCGCGACAAGGTCGAGGCGGCCATCGTGGAGGGCAAGCTGTTCGACG
ACGGTAAGCCGGAGGTGAAGGAGAAGGAGGAGGCCAAGAAGAAGGCCGCGGAGAAGAAAG
ATGAGCAGCCCGAAGCCGAGGAGAAGGGAGAGGAGGATGGCAAGAAGGAGGCCGACGCCG
AGGAGGAGAAGAAGGAAGGCGTGGAGGGAGGGGAGAAGAAGGAAGGCCAGGAGGAAGGGG
AGAAGGAGGAGGCCGAGGAGGAGAGCGGAGACGACACCAAGCAGGAGGCCAAGAAAGAGG
AAGCCGGCGAGAAGGCGGCGGCGAAGGAGCCGGAGACGGCGGCCGTTGTCGTCGACAAGG
ACATCGCGCTGTGGGGCGTGCCTCTGCTCCCTAGCAAGGGCGACGAGGCCACCGACGTGG
TGCTCCTCAAGTTCCTCCGCGCGCGCGACTTCAAGGCCGGCGCCGCGTTCGAGATGCTCC
GCCGCACGCTCCGCTGGCGCAGGGACTGGACCGGCTTCGGCTCCGGCGCCGAGTGCGACG
CCGACGCCGACCTCCCCGAGGAGCTCGCGGGCGCGTGCTACCTCGACGGCGCGGACCACG
AGGGCCACCCGGTGTGCTACAACGCGCTGGGCGTGTTCGCGGACGACGCCGTGTACAAGA
AGGCGCTGGGCACCGAGGAAGGCAAGGCCAGGTTCCTCCGGTGGCGGGTGCGCGCCATGG
AGCGCCACGTCGCCGAGCTGGACCTGAGGCCCGGCGGCGTCGCGTCGCTGCTGCAGGTGA
TCGACCTCAGGAACTCGCCGGGGCCGGCCAAGAAGGACTTCCGCGTCGCCGTCAAGCAGG
TGCTCGACCTGTTCCAGGACAACTACCCCGAGCTCGTCGCGAGAAACATCTTGATCAACG
TGCCGTTCTGGTACTACGCGTTCAGCACCCTGTTCTACCCGTTCCTGACGCAGAGGACGA
AGAGCAAGTTCGTCGTTGCTCGCCCGTCCAAGGTCACCGAGACCCTCCTCAACTTTTTGA
CGAGCATCGTACACCTTTTCCGAAGGTACATTCCGATCGAGGCCATCCCGGTGAAGTACG
GCGGCCTGAAGCGCGACGGCGACACCGAGTTCTCCGCGGACGACGGCGAGGTCGCGGAGG
TCACCGTCAAGGGAAGCTCCACGGAGACCATCGAGATCGAAGCCACTGAGGCTGATGCCA
CGCTGACATGGGACCTGACGGTGCTGGGGTGGGAGGTGAACTACAAGGAGGAGTTCGTGC
CGGCGGACGAGGGCTCCTACACCATCATCGTCAGGAAGGGCAAGAAGATGGCGTCCGGCG
AGGAGGCGGTCCGCAACTCGTTCCGCACCGGTGAGCCGGGCAAGGTCGTGCTCACCGTCC
AGAACACCTCGCACAGGAAGAAGAAGGTGCTGTTCAGGCACAAGGCCAAGAGCGCCTGCG
CCAAGAAGTGCTGAGAGGCTAAGAGATTTGGGAGTGAAATTGGTTGTGGATTTCAATATT
CGTTACATTCTTTGTGTGTGTGTAAGGAGAGAGAGAGAGAGATAGTACATTGTTCGGTGA
TTATTTGAGGTGGTTGTTGCAGCAAAAATGCAAAGAGTTTTCGATTGAGAA