Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d046952_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:9:112604813:112609405:-1 gene:Zm00001d046952 gene_biotype:protein_coding transcript_biotype:protein_coding description:Allantoate deiminase
Sequence

ATGGCTCCTTCCTCCCTCCGCCCGCCGCGCCACCACCCGTCTCCCCTCGTCGTCCTCGCC
ATCGCCGTCCTCCTCGTCTTGCGCACCGCCGATGGGCTGCCGGAGGCGGGAGGAGGAGGA
GGAGGCGGCGGTCTGTACCGGGAGATTCTCAGGGACGAGACCGTGCAGAGGCTCAAGGAG
CTGGGCAAGATATCTGATGGGGATGGCTACCTTGAAAGGACGTTTCTGAGTCCGGCCTCT
ATCAGAGCCACTGGTGTCATCGTCAGCTGGATGAAAGACGCTGGGCTTACGACGTGGGTC
GATCAGATGGGGAATATTCATGGTCGATATGAGCCGGCAAATTCTACCAGAGATGCCTTG
TTGATTGGATCTCATATGGACACTGTCGTTGATGCTGGGATGTACGATGGAGCCTTGGGT
ATTATTTCAGCAATCTCAGCACTGAAGGTTTTGAAAGTTACGGGGAAACTCCAGAGGTTA
ACGAGACCAGTGGAGGTCATTGCATTCAGCGATGAGGAGGGCATCAGATTCCAGACAACT
TTTCTGGGAAGCGCTGCTGTAGCTGGTACACTACCTGAATCAATTTTACAAGTATCAGAT
AAGAGTGGCACTACACTACAAGATGTTCTGAAAATGAATTCTTTTGAGGCTACCTCTACT
GCTATTAGTCAAGCCAGGTACAACCCGGAGTCTGTGGGGAGTTATGTTGAGGTACACATG
GAGCAAGGCCCTGTCCTGGAAGCCCTTCATTATCCACTTGGTGTTGTAAAAGGAATTGCA
GGACAGACACGATTGAAGGTAATAGTAGATGGTTCGCAAGGGCATGCTGGCACAGTTCCA
ATGAAATTGCGCCGTGATCCGATGGTTGCAGCTGCAGAGCTCGTTGTGACTCTGGAACGC
CTCTGTAAAGAGCCCAACAGTTTGCTGACCTACGACGAGGAGTGCAGCTGCTTCACTGAG
GAGTCCCTGGCCGGCCTGGTGTGCACCGTCGGCGAGCTGAACACGTGGCCAAGCGCGAGC
AACGTGATTCCGGGCCAGGTAAACTTCACGGTGGACATCCGCGCGATGGACGACCAAGTG
AGGGAGACGATCGTGACGAGCTTCTCGAGGCTTGTTCTCCAGAAATGCGATGACAGACTG
GTCGATTGCAAGGTCGAGCATAAGCACTCGGCGGCAGCGACGCACTGCGACCCGGAGTTA
ACGTCTCAGCTGAAGCGCGCGGCGCGGTCGACCGTGTCGGCAATGCCGGGGCGCACCGTG
GCGGCCGGCGAGACGCCCGTGCTGATGAGCGGCGCAGGGCACGACGCGATGGCGATGGCC
AGGCTCACCAAGATCGGGATGCTGTTCGTGCGGTGCCGCGGCGGCATCAGCCACTCGCCG
GAGGAGTCGGTGATGGACAACGACGTGTGGGCCGCGGGGCTCGCGCTGTTCAACTTCATC
GACCAGAACGCGGTGTCAGAAGAACTGGATGCCGGGCAGAACGTGGTGGCTGTGGCGCTG
GCGGTGGCAGAGTCGTGA

Peptide Sequence

PEP ID

Zm00001d046952_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:9:112604813:112609405:-1 gene:Zm00001d046952 transcript:Zm00001d046952_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Allantoate deiminase
Sequence

MAPSSLRPPRHHPSPLVVLAIAVLLVLRTADGLPEAGGGGGGGGLYREILRDETVQRLKE
LGKISDGDGYLERTFLSPASIRATGVIVSWMKDAGLTTWVDQMGNIHGRYEPANSTRDAL
LIGSHMDTVVDAGMYDGALGIISAISALKVLKVTGKLQRLTRPVEVIAFSDEEGIRFQTT
FLGSAAVAGTLPESILQVSDKSGTTLQDVLKMNSFEATSTAISQARYNPESVGSYVEVHM
EQGPVLEALHYPLGVVKGIAGQTRLKVIVDGSQGHAGTVPMKLRRDPMVAAAELVVTLER
LCKEPNSLLTYDEECSCFTEESLAGLVCTVGELNTWPSASNVIPGQVNFTVDIRAMDDQV
RETIVTSFSRLVLQKCDDRLVDCKVEHKHSAAATHCDPELTSQLKRAARSTVSAMPGRTV
AAGETPVLMSGAGHDAMAMARLTKIGMLFVRCRGGISHSPEESVMDNDVWAAGLALFNFI
DQNAVSEELDAGQNVVAVALAVAES

Transcript Sequence

Transcript ID

Zm00001d046952_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:9:112604813:112609405:-1 gene:Zm00001d046952 gene_biotype:protein_coding transcript_biotype:protein_coding description:Allantoate deiminase
Sequence

GTGGGAGGAGCCAGAGCCAGAGCCAGCCAGCCAGACACACAACCTCGGTCGGCGCGGCGG
CTCAACCCAATGGCTCCTTCCTCCCTCCGCCCGCCGCGCCACCACCCGTCTCCCCTCGTC
GTCCTCGCCATCGCCGTCCTCCTCGTCTTGCGCACCGCCGATGGGCTGCCGGAGGCGGGA
GGAGGAGGAGGAGGCGGCGGTCTGTACCGGGAGATTCTCAGGGACGAGACCGTGCAGAGG
CTCAAGGAGCTGGGCAAGATATCTGATGGGGATGGCTACCTTGAAAGGACGTTTCTGAGT
CCGGCCTCTATCAGAGCCACTGGTGTCATCGTCAGCTGGATGAAAGACGCTGGGCTTACG
ACGTGGGTCGATCAGATGGGGAATATTCATGGTCGATATGAGCCGGCAAATTCTACCAGA
GATGCCTTGTTGATTGGATCTCATATGGACACTGTCGTTGATGCTGGGATGTACGATGGA
GCCTTGGGTATTATTTCAGCAATCTCAGCACTGAAGGTTTTGAAAGTTACGGGGAAACTC
CAGAGGTTAACGAGACCAGTGGAGGTCATTGCATTCAGCGATGAGGAGGGCATCAGATTC
CAGACAACTTTTCTGGGAAGCGCTGCTGTAGCTGGTACACTACCTGAATCAATTTTACAA
GTATCAGATAAGAGTGGCACTACACTACAAGATGTTCTGAAAATGAATTCTTTTGAGGCT
ACCTCTACTGCTATTAGTCAAGCCAGGTACAACCCGGAGTCTGTGGGGAGTTATGTTGAG
GTACACATGGAGCAAGGCCCTGTCCTGGAAGCCCTTCATTATCCACTTGGTGTTGTAAAA
GGAATTGCAGGACAGACACGATTGAAGGTAATAGTAGATGGTTCGCAAGGGCATGCTGGC
ACAGTTCCAATGAAATTGCGCCGTGATCCGATGGTTGCAGCTGCAGAGCTCGTTGTGACT
CTGGAACGCCTCTGTAAAGAGCCCAACAGTTTGCTGACCTACGACGAGGAGTGCAGCTGC
TTCACTGAGGAGTCCCTGGCCGGCCTGGTGTGCACCGTCGGCGAGCTGAACACGTGGCCA
AGCGCGAGCAACGTGATTCCGGGCCAGGTAAACTTCACGGTGGACATCCGCGCGATGGAC
GACCAAGTGAGGGAGACGATCGTGACGAGCTTCTCGAGGCTTGTTCTCCAGAAATGCGAT
GACAGACTGGTCGATTGCAAGGTCGAGCATAAGCACTCGGCGGCAGCGACGCACTGCGAC
CCGGAGTTAACGTCTCAGCTGAAGCGCGCGGCGCGGTCGACCGTGTCGGCAATGCCGGGG
CGCACCGTGGCGGCCGGCGAGACGCCCGTGCTGATGAGCGGCGCAGGGCACGACGCGATG
GCGATGGCCAGGCTCACCAAGATCGGGATGCTGTTCGTGCGGTGCCGCGGCGGCATCAGC
CACTCGCCGGAGGAGTCGGTGATGGACAACGACGTGTGGGCCGCGGGGCTCGCGCTGTTC
AACTTCATCGACCAGAACGCGGTGTCAGAAGAACTGGATGCCGGGCAGAACGTGGTGGCT
GTGGCGCTGGCGGTGGCAGAGTCGTGATGGTTCGGTGGCGATTCTTTTCAGTGGGAGTAG
GCCTGTAGCCTGCAACTGTACATAAGACTTGTTATTACATTGCATTAAACAGGAATAAAA
AAAACGCTTCTCTTCGTTGAGA