Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Zea mays ) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d046935_T001
CDS Infomation	cds chromosome:B73_RefGen_v4:9:111766412:111777865:-1 gene:Zm00001d046935 gene_biotype:protein_coding transcript_biotype:protein_coding description:cryptochrome 3
Sequence	ATGCTCCACTACATCTCCTCTTCCCCTCTCCGTCCCCGATTCCTCCTCCTCCCGAGCCCA CCCTCCAATCTTCGCTTCCTCACCATGAGCGCCTCCCCCTCGAGCTCCTCGTCCCGTTCG GTGCGCGGTGCGGCGGTGTCGGTGCCTTCCCTCGGCGCCGACGAGGCCTGCGCAGTGGCA GATGAAGCCTTCCGGAGGTACACGTCGCCGAGCTTATTGAGGAGAGGCGGCGTCGGGGTG GCCGTCGTGTGGTTCAGGAACGACCTCCGAGTTATCGATAACGAGGCGCTTCTGCGAGCA TGGGCGGCTTCCGAGGCGGTCCTGCCGGTGTACTGTGTCGATCCGCGGGTCTTTGCGGGG AGCACGCATTACTTTGGGTTCCCCAAGAAGGGAGCATTGAGGGCGCAGTTCTTGATAGAG TGTTTAGGAGACCTGAAGCAGAGCCTGAGGAAAAAGGGCCTCGATTTGCTAGTCCGGCAT GGCAAGCCTGAAGAGATCCTTCCTTCAATTGCAAAGGCCGTCAGTGCACACACAATATAC GCTCATAAGGAAACCTGTAGCGAAGAGCTCCTCGTCGAACGCCTAGTGAGCAAAGGCTTG GAACAAGTCCAGATTGCTCAAGGAGGAGCATCTGTCCCGAAGAGGCCTCTGAACCCCAGG TTGCAGCTCATCTGGGGAGCAACAATGTACCACATCGATGACCTCCCGTTCCCAGTTAGC AGCTTGCCAGACGTGTACACACAGTTCAGAAAGGCAGTTGAATCGAAGTGCTCAGTTAGG AACTGCGCCAAGTTGCCAACGTCGCTCGGTCCACCCCCTAGTTCCAGCATAGATGAGATT GGAGGATGGGGGACAGTACCAACACTGGAGTCACTAGGCCCCAGTGTTACGAAGGCAGGT TTAGCTTCTGAGAAAGGAATGCATTTCATAGGAGGAGAGAGCGCAGCTCTTGGTAGGGTA CATGAGTACTTCTGGAAGAAGGATCAGCTGAAAGATTACAAGGTGACCAGGAACGGCATG GTTTTATTTGAGTTGATATGGAGAGACTACTTCAGATTTCTATCAGCAAAATATGGAAAC GCCATATTTCACCTGGGAGGCCCGAGGAAAGTAGTATCGAAGTGGAGTCAGGACCAAGCA CTGTTTGAATCATGGAGAGATGGTCGAACTGGATACCCTCTTATTGATGCCAACATGAGG GAGCTTTCAGCCACCGGTTACATGTCCAACCGTGGTCGTCAGATTGTCTGCTCATTTCTT GTTCGAGATATGGGTGTTGATTGGCGAATGGGAGCCGAATGGTTCGAGACATGCTTATTG GATTATGACCCAGCTTCGAATTATGGCAATTGGACATATGGAGCAGGAGTTGGCAATGAT CCACGAGAAGATCGATACTTCAGTATCCCAAAACAAGCCAAGTCATATGATCCTGAAGGG GAATACGTTGCATACTGGTTACCAGAACTTCGGTCACTTGCAAAGGAAAGGAGAAATTTC CCAGGAGCCTCATACATCAGGCAGGTAGTACCACTGAAGTTTGATGGTGGAAATCAGAGG AAGGATCAGCAATTCAACCGGCAGAGAAGACCAAACAACGTGTACATAAGACAAGTAAAA TAG

Peptide Sequence

PEP ID	Zm00001d046935_P001
PEP Infomation	pep chromosome:B73_RefGen_v4:9:111766412:111777865:-1 gene:Zm00001d046935 transcript:Zm00001d046935_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:cryptochrome 3
Sequence	MLHYISSSPLRPRFLLLPSPPSNLRFLTMSASPSSSSSRSVRGAAVSVPSLGADEACAVA DEAFRRYTSPSLLRRGGVGVAVVWFRNDLRVIDNEALLRAWAASEAVLPVYCVDPRVFAG STHYFGFPKKGALRAQFLIECLGDLKQSLRKKGLDLLVRHGKPEEILPSIAKAVSAHTIY AHKETCSEELLVERLVSKGLEQVQIAQGGASVPKRPLNPRLQLIWGATMYHIDDLPFPVS SLPDVYTQFRKAVESKCSVRNCAKLPTSLGPPPSSSIDEIGGWGTVPTLESLGPSVTKAG LASEKGMHFIGGESAALGRVHEYFWKKDQLKDYKVTRNGMVLFELIWRDYFRFLSAKYGN AIFHLGGPRKVVSKWSQDQALFESWRDGRTGYPLIDANMRELSATGYMSNRGRQIVCSFL VRDMGVDWRMGAEWFETCLLDYDPASNYGNWTYGAGVGNDPREDRYFSIPKQAKSYDPEG EYVAYWLPELRSLAKERRNFPGASYIRQVVPLKFDGGNQRKDQQFNRQRRPNNVYIRQVK

Transcript Sequence

Transcript ID	Zm00001d046935_T001
Transcript Infomation	cdna chromosome:B73_RefGen_v4:9:111766412:111777865:-1 gene:Zm00001d046935 gene_biotype:protein_coding transcript_biotype:protein_coding description:cryptochrome 3
Sequence	ACTTCTCAAAACTCCCAACTACCACTACCAGTCCAATCAAGAAATGCTCCACTACATCTC CTCTTCCCCTCTCCGTCCCCGATTCCTCCTCCTCCCGAGCCCACCCTCCAATCTTCGCTT CCTCACCATGAGCGCCTCCCCCTCGAGCTCCTCGTCCCGTTCGGTGCGCGGTGCGGCGGT GTCGGTGCCTTCCCTCGGCGCCGACGAGGCCTGCGCAGTGGCAGATGAAGCCTTCCGGAG GTACACGTCGCCGAGCTTATTGAGGAGAGGCGGCGTCGGGGTGGCCGTCGTGTGGTTCAG GAACGACCTCCGAGTTATCGATAACGAGGCGCTTCTGCGAGCATGGGCGGCTTCCGAGGC GGTCCTGCCGGTGTACTGTGTCGATCCGCGGGTCTTTGCGGGGAGCACGCATTACTTTGG GTTCCCCAAGAAGGGAGCATTGAGGGCGCAGTTCTTGATAGAGTGTTTAGGAGACCTGAA GCAGAGCCTGAGGAAAAAGGGCCTCGATTTGCTAGTCCGGCATGGCAAGCCTGAAGAGAT CCTTCCTTCAATTGCAAAGGCCGTCAGTGCACACACAATATACGCTCATAAGGAAACCTG TAGCGAAGAGCTCCTCGTCGAACGCCTAGTGAGCAAAGGCTTGGAACAAGTCCAGATTGC TCAAGGAGGAGCATCTGTCCCGAAGAGGCCTCTGAACCCCAGGTTGCAGCTCATCTGGGG AGCAACAATGTACCACATCGATGACCTCCCGTTCCCAGTTAGCAGCTTGCCAGACGTGTA CACACAGTTCAGAAAGGCAGTTGAATCGAAGTGCTCAGTTAGGAACTGCGCCAAGTTGCC AACGTCGCTCGGTCCACCCCCTAGTTCCAGCATAGATGAGATTGGAGGATGGGGGACAGT ACCAACACTGGAGTCACTAGGCCCCAGTGTTACGAAGGCAGGTTTAGCTTCTGAGAAAGG AATGCATTTCATAGGAGGAGAGAGCGCAGCTCTTGGTAGGGTACATGAGTACTTCTGGAA GAAGGATCAGCTGAAAGATTACAAGGTGACCAGGAACGGCATGGTTTTATTTGAGTTGAT ATGGAGAGACTACTTCAGATTTCTATCAGCAAAATATGGAAACGCCATATTTCACCTGGG AGGCCCGAGGAAAGTAGTATCGAAGTGGAGTCAGGACCAAGCACTGTTTGAATCATGGAG AGATGGTCGAACTGGATACCCTCTTATTGATGCCAACATGAGGGAGCTTTCAGCCACCGG TTACATGTCCAACCGTGGTCGTCAGATTGTCTGCTCATTTCTTGTTCGAGATATGGGTGT TGATTGGCGAATGGGAGCCGAATGGTTCGAGACATGCTTATTGGATTATGACCCAGCTTC GAATTATGGCAATTGGACATATGGAGCAGGAGTTGGCAATGATCCACGAGAAGATCGATA CTTCAGTATCCCAAAACAAGCCAAGTCATATGATCCTGAAGGGGAATACGTTGCATACTG GTTACCAGAACTTCGGTCACTTGCAAAGGAAAGGAGAAATTTCCCAGGAGCCTCATACAT CAGGCAGGTAGTACCACTGAAGTTTGATGGTGGAAATCAGAGGAAGGATCAGCAATTCAA CCGGCAGAGAAGACCAAACAACGTGTACATAAGACAAGTAAAATAGGAGGCTCTTGATTC ACTTGAAATTGAACCATCTATCAGTAGGAGATGAAGCAAATTTTTACACAACTGATTGTG GTGTAAACATACGCGAATTACTCTATGGTCTTATGCAATGTTCATTGATGCATTCAGATA CACTTTGCAACGTTTGTCAGCAGATCCAGCAGTCCAGCACAAAGACTCAGAAGACCTGAA CATTGACTTGCACATCCAACACATTTTAACATGGCAATCAGAAACTGAAGAATGGCAAAC ATTTTCATTCAGATTACCTCATTACTCAGCAACACTGTTTATACTTTATACCAGTACTTA TTCACCAAAACTAGCTCCACTAACAAAAAATGAGCAAAGAAATATATTTACAACACTAGG GATGAGATACTCTAAACACTCAAATAAGACAACTCACACCTTCAAAAGGGACAGCCACTC ATATACAAGTAAACAAGTTAGCCTTGCTGAGAGAAGCGGAGATACGACTATGACATCACT GACGATCATGAACTTGACAAAAAGTAGCTTCAAGCCTTCCTAAAAGATTCTTTCCTTGCA TAGTAGCGAGCATTGTAACTCTTGGCTGGTATAGGAATTCCTAGTGACTGATCTACGCTG TGCACCTTCCACGCACAGAATTGTGCATCATGAGCAAGAGGATTGGTTGCACGAAGTGGT GGAGATCCCATAAAGTATGGAGGTGAAGCCTGCAGATTGCAAGGTCCCACAACAGAAGCA TTAGTTTAATTCCAAATAAATTTCAATTTAACTGTGCTAAAAATTTGCAACAAAATCACC TCAAGAAAAGAGAAAGAAACCAAGAAAGAAAAAGAAATTTTTTAATAAAGGCGATAGATT AAATGGAAGTGGAAGCACATTTGAGAAACGACAGTATACAGGCGCCAGTTTGATGAAACA ACTGTACAGAAACGAACCTTACTCACAATGAATTCAGAAAGATCTTGTGCAGCTCTCAAG TCATGTTCCCTATACCGCCTTGACTCCTTTTGCATGGTATTGGACACCTGATCGCTACAT CTCTGCTTTCTGTGTTTTGGCAGGTTTCCATCAGTGTTTCCAATCTTAGACCTCGTAGTT TTTTCATTTCCTCTGCTGCTTCATTTCCATACGATGTGAAACCTTCTTTAAAGGTTTGCA GAACTGATGAAATGTTCCATACCCATGACAGGAACATGAACTAAGCTGCTTCAAGGAAAC ACCTGAACGGGAGAAGGAAGCACCGAAGCTGCGGACAGCGGGGAAGAGGGAGACGTCAGG CGTGGAGACAAACCGCTCCGCTCCGCTCTGCCCCGCCCCCGCCGCCCCCCGTCCGGCCGC CTTTGCTCTTGGCGAGCGTGCGTGCGTGCGTG