Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d046909_T002
CDS Infomation

cds chromosome:B73_RefGen_v4:9:110047813:110058739:-1 gene:Zm00001d046909 gene_biotype:protein_coding transcript_biotype:protein_coding description:Homogentisate phytyltransferase 1 chloroplastic
Sequence

ATGGACGCGCTTCGCCTACGGCCGTCCCTCCTCCCCGTGCGGCCCGGCGCGGCCCGCCCG
CGAGATCATTTTCTACCACCATGTTGTTCCATACAACGAAATGGTGAAGGACGAATTTGC
TTTTCTAGCCAAAGGACCCAAGGTCCTACCTTGCATCACCATCAGAAATTCTTCGAATGG
AAATCCTCCTATTGTAGGATATCACATCGGTCATTAAATACTTCTGTTAATGCTTCGGGG
CAACAGCTGCAGTCTGAACCTGAAACACATGATTCTACAACCATCTGGAGGGCAATATCA
TCTTCTCTAGATGCATTTTACAGATTTTCCCGGCCACATACTGTCATAGGAACAGCATTA
AGCATAGTCTCAGTTTCCCTTCTAGCTGTCCAGAGCTTGTCTGATATATCACCTTTGTTC
CTCACTGGTTTGCTGGAGGCAGTGGTAGCTGCCCTTTTCATGAATATCTATATTGTTGGA
CTGAACCAGTTATTCGACATTGAGATAGACAAGGTTAACAAGCCAACTCTTCCATTGGCA
TCTGGGGAATACACCCTTGCAACTGGGGTTGCAATAGTTTCGGTCTTTGCCGCTATGAGC
TTTGGCCTTGGATGGGCTGTTGGATCACAACCTCTGTTTTGGGCTCTTTTCATAAGCTTT
GTTCTTGGGACTGCATATTCAATCAATCTGCCGTACCTTCGATGGAAGAGATTTGCTGTT
GTTGCAGCACTGTGCATATTAGCAGTTCGTGCAGTGATTGTTCAGCTGGCCTTTTTTCTC
CACATTCAGACTTTTGTTTTCAGGAGACCGGCAGTGTTTTCTAGGCCATTATTATTTGCA
ACTGGATTTATGACGTTCTTCTCTGTTGTAATAGCACTATTCAAGGATATACCTGACATC
GAAGGGGACCGCATATTCGGGATCCGATCCTTCAGCGTCCGGTTAGGGCAAAAGAAGCGT
TGCGATACTGATGGGAGCTACCTCTTCCTGTTTGTGGAGCAAAACAGCAACCATCGCTGG
CCATTCCATACTTGCCGCGATCCTATGGAGCTGCGCGCGATCGGTGGACTTGACGAGCAA
AGCCGCAATAACGTCCTTCTACATGTTCATCTGGAAGCTGTTCTACGCGGAGTACCTGCT
CATCCCTCTGGTGCGGTGAGCGCGAGGCGAGGTGGTGGCAGACGGATCGGCGTCGGCGGG
GCGGCAAACAACTCCACGGGAGAACTTGAGTGCCGGAAGTAA

Peptide Sequence

PEP ID

Zm00001d046909_P002
PEP Infomation

pep chromosome:B73_RefGen_v4:9:110047813:110058739:-1 gene:Zm00001d046909 transcript:Zm00001d046909_T002 gene_biotype:protein_coding transcript_biotype:protein_coding description:Homogentisate phytyltransferase 1 chloroplastic
Sequence

MDALRLRPSLLPVRPGAARPRDHFLPPCCSIQRNGEGRICFSSQRTQGPTLHHHQKFFEW
KSSYCRISHRSLNTSVNASGQQLQSEPETHDSTTIWRAISSSLDAFYRFSRPHTVIGTAL
SIVSVSLLAVQSLSDISPLFLTGLLEAVVAALFMNIYIVGLNQLFDIEIDKVNKPTLPLA
SGEYTLATGVAIVSVFAAMSFGLGWAVGSQPLFWALFISFVLGTAYSINLPYLRWKRFAV
VAALCILAVRAVIVQLAFFLHIQTFVFRRPAVFSRPLLFATGFMTFFSVVIALFKDIPDI
EGDRIFGIRSFSVRLGQKKRCDTDGSYLFLFVEQNSNHRWPFHTCRDPMELRAIGGLDEQ
SRNNVLLHVHLEAVLRGVPAHPSGAVSARRGGGRRIGVGGAANNSTGELECRK

Transcript Sequence

Transcript ID

Zm00001d046909_T002
Transcript Infomation

cdna chromosome:B73_RefGen_v4:9:110047813:110058739:-1 gene:Zm00001d046909 gene_biotype:protein_coding transcript_biotype:protein_coding description:Homogentisate phytyltransferase 1 chloroplastic
Sequence

GTGAAAGGCACGGGGCCGCCGGCCGGACTCTTCTGACTTGGCAACCGCCGCGCAGCGCGA
CGAGCGCCACCTGCTTGCTGCCGCGTGCCTGCGTGCGTGTGCGTCCACCACTGACCCCGC
GCCCGCCCGCCGCCCCTGCCCCTCCACTCCACTTGCTCACTCGTCGGCTCGTCGCGGCCC
GCTTCCCCCCCGGCCAAGGGATGGACGCGCTTCGCCTACGGCCGTCCCTCCTCCCCGTGC
GGCCCGGCGCGGCCCGCCCGCGAGATCATTTTCTACCACCATGTTGTTCCATACAACGAA
ATGGTGAAGGACGAATTTGCTTTTCTAGCCAAAGGACCCAAGGTCCTACCTTGCATCACC
ATCAGAAATTCTTCGAATGGAAATCCTCCTATTGTAGGATATCACATCGGTCATTAAATA
CTTCTGTTAATGCTTCGGGGCAACAGCTGCAGTCTGAACCTGAAACACATGATTCTACAA
CCATCTGGAGGGCAATATCATCTTCTCTAGATGCATTTTACAGATTTTCCCGGCCACATA
CTGTCATAGGAACAGCATTAAGCATAGTCTCAGTTTCCCTTCTAGCTGTCCAGAGCTTGT
CTGATATATCACCTTTGTTCCTCACTGGTTTGCTGGAGGCAGTGGTAGCTGCCCTTTTCA
TGAATATCTATATTGTTGGACTGAACCAGTTATTCGACATTGAGATAGACAAGGTTAACA
AGCCAACTCTTCCATTGGCATCTGGGGAATACACCCTTGCAACTGGGGTTGCAATAGTTT
CGGTCTTTGCCGCTATGAGCTTTGGCCTTGGATGGGCTGTTGGATCACAACCTCTGTTTT
GGGCTCTTTTCATAAGCTTTGTTCTTGGGACTGCATATTCAATCAATCTGCCGTACCTTC
GATGGAAGAGATTTGCTGTTGTTGCAGCACTGTGCATATTAGCAGTTCGTGCAGTGATTG
TTCAGCTGGCCTTTTTTCTCCACATTCAGACTTTTGTTTTCAGGAGACCGGCAGTGTTTT
CTAGGCCATTATTATTTGCAACTGGATTTATGACGTTCTTCTCTGTTGTAATAGCACTAT
TCAAGGATATACCTGACATCGAAGGGGACCGCATATTCGGGATCCGATCCTTCAGCGTCC
GGTTAGGGCAAAAGAAGCGTTGCGATACTGATGGGAGCTACCTCTTCCTGTTTGTGGAGC
AAAACAGCAACCATCGCTGGCCATTCCATACTTGCCGCGATCCTATGGAGCTGCGCGCGA
TCGGTGGACTTGACGAGCAAAGCCGCAATAACGTCCTTCTACATGTTCATCTGGAAGCTG
TTCTACGCGGAGTACCTGCTCATCCCTCTGGTGCGGTGAGCGCGAGGCGAGGTGGTGGCA
GACGGATCGGCGTCGGCGGGGCGGCAAACAACTCCACGGGAGAACTTGAGTGCCGGAAGT
AAACTCCCGTTTGAAAGTTGAAGCGTGCACCACCGGCACCGGGCAGAGAGAGACACGGTG
GCTGGATGGATACGGATGGCCCCCCCAATAAATTCCCCCGTGCATGGTACCCCACGCTGC
TTGATGATATCCCATGTGTCCGGGTGACCGGACCTGATCGTCTCTAGAGAGATTGGTTGC
ACAACGTCCAACATAGCCCGTAGGTATTGCTACCACTGCTAGTATGATACTCCTTCCTAG
TCCTTGCCAGCACCAGTGACCCAAACTTGGTCGGCTGAGCTCAGCGCTCAGCAGCTTTAC
GTGCATCTGCGCCTTGACTTGT