Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d046835_T011
CDS Infomation	cds chromosome:B73_RefGen_v4:9:107924704:107935775:1 gene:Zm00001d046835 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RNA polymerase2 description: RNA polymerase2
Sequence	ATGCCGCTCCTCCTCTACCCCTTCTCCGCGTGCGTGCCGCCGCCGCGGGCGCTGCTCCGC CGCCTGTCGCCGCCGCCGCCCATGGCGGTCGTCGCTCCGCTGCCTTCCGCCGTCCGTATA ATCCCCTCGGTGGGAACGCTCGACCTTCCGGCGCTCCCGCCCCCGCCCACGGACGACTTC CACTGGCTCGACCTATTCGCGTTCCTCAACTCCCCTGCCGACACCTACCACCAGATCCCC GCGCAGGGCGAAGAGGAGCTGGAGGCGGGGCTGGAACTGGAACTGGAGCTGGAGCTGGAG AAGCACGCCGAGGTGGAGAGGCAGCGGGGGCGGGCGCGAAGAGCGCAACTCCGGCGGCTG CGGCAGCGGCAGGTCAAGGCGGAGACGGAGGCCTGGGCGCGGGCCGCCGAGGAGTACCGC GAGATCGAGCGGGAGATGCTCGACCGCAGGCTCGCGCCCGCGCTGCCCTACGTAAAGGCG CTCTTCGTCGGCTGGTTCGAGCCGCTGCGGGACGCCATCGCCAGGGACCAGGACGTGCAG CGAAGGAAGCGGGTCAAGCACGTCTACGCTAAGTACCTGCTTCTGCTCCCAGCCGACAAG GTGGCCGTAATCGTCATGCACAAGATGATGGGCCTGCTCATGTCCAGCAAGGACGGCACT GGCAGTGTCCGCGTTGTCCAGGCCGCGCACTGCATTGGTGAGGCTGTTGAGCGCGAGTTC AAAGTCCAGTCATTCTTTCAGAAAAGTAGGAAGAAGAAAATCCAAGGTGAAAATGATCCA GCATTGGAGAAGGAGCAAGCTAAATGCCGTAAGCGTGTTAAGAGTTTAGTTAAGAGGCGG AAGATGAGTGAAGCACAGAGGCTAGTTCAACAGGAGTTGGAATTGGAGGAATGGGGCACA GAAGCCCAAGTGAAGTTGGGAAGTCGCCTGATTGAATTATTACTAGATTCAGCATTTGTG CAGCCACCAGCTGATCAAACACCAGATAGTTCTCCAGATATTCGACCTGCATTTAAGCAT GTGCTACGTCAGCCTATAATAGAAAATGGGAGGCTAAAGAAGAAGCATTGGGTGATAGAG TGTGACCATCTTGTGCATGAGGGGTTTGAAAGCACTGCTCGGCATGTTGATATACCCTAC CTCCCTATGCTGGTACCTCCGAAGAAATGGAAAGGTTATGATAAAGGTGGTCACCTTTTT CTGCCCTCATACATTATGAGGACACATGGTGTGAAGGACCAAAAGGATGCAATTAATAGT GTTCCTAGAAAACAGCTGCGAAAAGTATTTGAGGCATTAGATATCCTTGGGAGTACTAAA TGGAGGGTGAATAGAAGAGTTCATGATGTTGTTGAGACTATCTGGAGTCAAGGTGGAGGC ATTGCAGGGCTGGTGGACAAGGCAAATATTCCTTTGCCTGAACGACCAGAATCAGAGGAT CCTGATGAAATGCAGAAATGGAAGTGGAGTTTAAAGAAGGCAAAGAAAACTAACCGTGAA CTGCATGCTGAGAGATGTGACACTGAGCTCAAACTCTCGGTTGCTCGTAAAATGAGAGAG GAGGATGGATTTTATTACCCTCACAATTTAGATTTCCGTGGGCGTGCATACCCTATGCAT CCTCATTTGAGTCACCTAGGTTCAGATCTTTGTCGGGGTGTTCTAGAGTATGCTGAAGGG CGGCCACTAGGAAAGTCAGGGTTGTGCTGGTTGAAGATACACTTGGCTAACAAATATGGT GGTGGCATTGAAAAGCTTTCTCACGAGGGCAAGCTAGCTTTTGTGGAGAACCAACTGTTT GATATATTTGATTCAGCAGCAAATCCTGTTGATGGGAACTGCTGGTGGACGAATGCTGAG GATCCCTTTCAGTGTTTAGCTGCATGCATGGACCTTTCTGATGCCTTAAGAAGTCCATCA CCTTACCATGCTGTCTCTCACCTGCCTATTCATCAGGATGGTTCATGCAATGGTTTACAA CATTATGCCGCTCTTGGAAGGGACTATATGGGCGCGGTTGCTGTCAACCTTGTTCCCGGA GAGAAACCTGCAGATATCTACTCAGAAATAGCTTCTAGGGTACTGAATGTTGTATGTGAA GACTCGATGAAGGATCCTGCTACTAACCCAACTGCTTCATTAGCAAGAGTTTTAGTTGAT CAGCTTACAGGTGGATAG

Peptide Sequence

PEP ID	Zm00001d046835_P011
PEP Infomation	pep chromosome:B73_RefGen_v4:9:107924704:107935775:1 gene:Zm00001d046835 transcript:Zm00001d046835_T011 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RNA polymerase2 description: RNA polymerase2
Sequence	MPLLLYPFSACVPPPRALLRRLSPPPPMAVVAPLPSAVRIIPSVGTLDLPALPPPPTDDF HWLDLFAFLNSPADTYHQIPAQGEEELEAGLELELELELEKHAEVERQRGRARRAQLRRL RQRQVKAETEAWARAAEEYREIEREMLDRRLAPALPYVKALFVGWFEPLRDAIARDQDVQ RRKRVKHVYAKYLLLLPADKVAVIVMHKMMGLLMSSKDGTGSVRVVQAAHCIGEAVEREF KVQSFFQKSRKKKIQGENDPALEKEQAKCRKRVKSLVKRRKMSEAQRLVQQELELEEWGT EAQVKLGSRLIELLLDSAFVQPPADQTPDSSPDIRPAFKHVLRQPIIENGRLKKKHWVIE CDHLVHEGFESTARHVDIPYLPMLVPPKKWKGYDKGGHLFLPSYIMRTHGVKDQKDAINS VPRKQLRKVFEALDILGSTKWRVNRRVHDVVETIWSQGGGIAGLVDKANIPLPERPESED PDEMQKWKWSLKKAKKTNRELHAERCDTELKLSVARKMREEDGFYYPHNLDFRGRAYPMH PHLSHLGSDLCRGVLEYAEGRPLGKSGLCWLKIHLANKYGGGIEKLSHEGKLAFVENQLF DIFDSAANPVDGNCWWTNAEDPFQCLAACMDLSDALRSPSPYHAVSHLPIHQDGSCNGLQ HYAALGRDYMGAVAVNLVPGEKPADIYSEIASRVLNVVCEDSMKDPATNPTASLARVLVD QLTGG

Transcript Sequence

Transcript ID	Zm00001d046835_T011
Transcript Infomation	cdna chromosome:B73_RefGen_v4:9:107924704:107935775:1 gene:Zm00001d046835 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RNA polymerase2 description: RNA polymerase2
Sequence	AATCCAATCCGACCCTCACCATTGTAGCCGGAACTCGCAGCGGGACACTAGGCGCGCATG CCGCTCCTCCTCTACCCCTTCTCCGCGTGCGTGCCGCCGCCGCGGGCGCTGCTCCGCCGC CTGTCGCCGCCGCCGCCCATGGCGGTCGTCGCTCCGCTGCCTTCCGCCGTCCGTATAATC CCCTCGGTGGGAACGCTCGACCTTCCGGCGCTCCCGCCCCCGCCCACGGACGACTTCCAC TGGCTCGACCTATTCGCGTTCCTCAACTCCCCTGCCGACACCTACCACCAGATCCCCGCG CAGGGCGAAGAGGAGCTGGAGGCGGGGCTGGAACTGGAACTGGAGCTGGAGCTGGAGAAG CACGCCGAGGTGGAGAGGCAGCGGGGGCGGGCGCGAAGAGCGCAACTCCGGCGGCTGCGG CAGCGGCAGGTCAAGGCGGAGACGGAGGCCTGGGCGCGGGCCGCCGAGGAGTACCGCGAG ATCGAGCGGGAGATGCTCGACCGCAGGCTCGCGCCCGCGCTGCCCTACGTAAAGGCGCTC TTCGTCGGCTGGTTCGAGCCGCTGCGGGACGCCATCGCCAGGGACCAGGACGTGCAGCGA AGGAAGCGGGTCAAGCACGTCTACGCTAAGTACCTGCTTCTGCTCCCAGCCGACAAGGTG GCCGTAATCGTCATGCACAAGATGATGGGCCTGCTCATGTCCAGCAAGGACGGCACTGGC AGTGTCCGCGTTGTCCAGGCCGCGCACTGCATTGGTGAGGCTGTTGAGCGCGAGTTCAAA GTCCAGTCATTCTTTCAGAAAAGTAGGAAGAAGAAAATCCAAGGTGAAAATGATCCAGCA TTGGAGAAGGAGCAAGCTAAATGCCGTAAGCGTGTTAAGAGTTTAGTTAAGAGGCGGAAG ATGAGTGAAGCACAGAGGCTAGTTCAACAGGAGTTGGAATTGGAGGAATGGGGCACAGAA GCCCAAGTGAAGTTGGGAAGTCGCCTGATTGAATTATTACTAGATTCAGCATTTGTGCAG CCACCAGCTGATCAAACACCAGATAGTTCTCCAGATATTCGACCTGCATTTAAGCATGTG CTACGTCAGCCTATAATAGAAAATGGGAGGCTAAAGAAGAAGCATTGGGTGATAGAGTGT GACCATCTTGTGCATGAGGGGTTTGAAAGCACTGCTCGGCATGTTGATATACCCTACCTC CCTATGCTGGTACCTCCGAAGAAATGGAAAGGTTATGATAAAGGTGGTCACCTTTTTCTG CCCTCATACATTATGAGGACACATGGTGTGAAGGACCAAAAGGATGCAATTAATAGTGTT CCTAGAAAACAGCTGCGAAAAGTATTTGAGGCATTAGATATCCTTGGGAGTACTAAATGG AGGGTGAATAGAAGAGTTCATGATGTTGTTGAGACTATCTGGAGTCAAGGTGGAGGCATT GCAGGGCTGGTGGACAAGGCAAATATTCCTTTGCCTGAACGACCAGAATCAGAGGATCCT GATGAAATGCAGAAATGGAAGTGGAGTTTAAAGAAGGCAAAGAAAACTAACCGTGAACTG CATGCTGAGAGATGTGACACTGAGCTCAAACTCTCGGTTGCTCGTAAAATGAGAGAGGAG GATGGATTTTATTACCCTCACAATTTAGATTTCCGTGGGCGTGCATACCCTATGCATCCT CATTTGAGTCACCTAGGTTCAGATCTTTGTCGGGGTGTTCTAGAGTATGCTGAAGGGCGG CCACTAGGAAAGTCAGGGTTGTGCTGGTTGAAGATACACTTGGCTAACAAATATGGTGGT GGCATTGAAAAGCTTTCTCACGAGGGCAAGCTAGCTTTTGTGGAGAACCAACTGTTTGAT ATATTTGATTCAGCAGCAAATCCTGTTGATGGGAACTGCTGGTGGACGAATGCTGAGGAT CCCTTTCAGTGTTTAGCTGCATGCATGGACCTTTCTGATGCCTTAAGAAGTCCATCACCT TACCATGCTGTCTCTCACCTGCCTATTCATCAGGATGGTTCATGCAATGGTTTACAACAT TATGCCGCTCTTGGAAGGGACTATATGGGCGCGGTTGCTGTCAACCTTGTTCCCGGAGAG AAACCTGCAGATATCTACTCAGAAATAGCTTCTAGGGTACTGAATGTTGTATGTGAAGAC TCGATGAAGGATCCTGCTACTAACCCAACTGCTTCATTAGCAAGAGTTTTAGTTGATCAG CTTACAGGTGGATAGGAAGCTTGTCAAGCAGACAGTCATGACATCAGTCTATGGTGTTAC ATACATTGGTGCTCGTCAGCAGATTACAAAGAGACTGCAAGAGAAAGGGCTTATCACAGA TGATAAATTGCTGTATGATGTATCCTGTTACGCTACTCGGGTAACTTTGGATGCACTGGG ACAAATGTTCCAATCTGCCCGTGGTATAATGGCCTGGCTTGGTGACTGTGCGAAGATGAT TGCTTCAAAAAATCAACCAGTCAAGTGGACAAGTCCTGTTGGTCTCCCAGTTGTTCAGCC CTACAAGAAATATAAGAATTATATGATACGAACTTCTTTGCAATGTCTGGCTTTACGGCG GGAGGGTGATGCAATTGCAATCCAAAGGCAAAAGGCAGCTTTTCCACCAAATTTTGTGCA CTCACTGGATAGTTCACATATGATGATGACAGCGATTGCTTGCAAGGAGTCTGGCCTTCA TTTTGCAGGAGTTCATGACTCATTTTGGGTGCATGCGTGTGATGTTGATCAAATGAACCA GATATTGAGACAACAATTTGTGGAGCTTTACAGCATGCCGATTCTTGAAAATCTGCTGGA GGAGTTCCAAACGTCATTCCCCACACTAGAATTTCCACCCTGCCCACCGCAAGGTAACTT TGACGTGAGGGAAGTTCTGACTTCAACATACTTCTTCAACTAAGCTTAACAGGGGAAGTT CTGCACATGAAACATGCATAAGCAAGAAACAGGAGTCAATCAATTATCTGCACTCCAGAC CAAGCCAAGTGGTTCCAAGGAATTTGAAATGAACAAACCTAAAGTAGTTCCTGCTGAGTT TTTAGGTTGATGCAGAATCTGCTTGGATGTTCAGGTCACTCATTGGTTGCCATGACAACT CATGGTATACTCCACCCTGGAGTGCAAAGGTAAATTATGAGATGCCAGAGCAGAATACTG ACTGACAGTTGATCGTGCTGACCTCATTGATCATAGACGACAGCGGAACACAAAGTTCGC TGAATATACGTGTACGTTGTACCATCAATTTTTTTGCTGTCTTAGGACTTGTAGATCGCA TAATGCCGTGGCATCACCCTGTAATAAATGTGTAAGATATGATAGCCAAATAGATGTATA CGAGACTAGTTGCTGTTGACAGCAAGTTTTGAAAAGAGAGACATGAATCAGGCAGACTTC ACCGGT