Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d046788_T002
CDS Infomation

cds chromosome:B73_RefGen_v4:9:106003316:106008536:-1 gene:Zm00001d046788 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

ATGGCTGCTGCTACGGCGTTCCGGTCGGGGACGAGGCGGGGCGACGCTCTCGCGCCCGTA
GAGGACGCGGGCTCCGCCACTCGCGAGCGCCAGGCCGCGGGCCGCGGCGGAGGCAGCGTC
CGCCGGTCGAAGAGCCTGAGCCGGTTCCCGCCGCCGTCGCCCTCCACCGAGGACACGGCG
ACGCCGTCGTCGAGGTTCGTCAACAAGGTGCGGGGCGGGGGAAGCGGCGGCGTCTTCCCG
CCGCAGGTCAGCCTCGACGACCTCGCCGACGAGTTCTTCCGGGCCAGGGCCGAGTCCGAG
GACGACGACGACGAGGAGACTGCTGCGCGCGGCCGGTCAAGGCTTCCAGCGGCCGCAGAG
CGTGGGGGCGGTGGCGCTGGCGGTCGGCGGAGCTCCACCGCGCGGTACGCTAGGCAGACG
GAGTCTTCGCGGCAGCGCGGGCGCTCCGTGTCGCGGCCGCCAGCCGAGCGGCGAGGCGTA
GCGGCCAATGCGGTGGATGGCGGCCCTGCAGCCAGGAGGCAGCGTTATGCGTCGGTCGAC
CGGCGCGCTGCCATGGATCGACAACGGTGGTGCGATTCGGATAATGATATGGAAGTTCCT
CACCAGTATGTTTCTAGGGGGATGCATACCAAAAGTAGCAGTGGCAATAGCCTGCAGAGT
TCATTCCATAAGCCATCTAAAGCAAATCAAGCTTTGAAGAGGTCTACAAGTCAAAAGGAT
TTCTTTCATTCTAGAGACAGCAGCTCCAGCCATTCTTCAATTACTGATGATGAGTCTAGG
AGTTCACTCTCTTTCCATAGCAGAAATCAGAAGGCTGTCTGTGCAGTTTATGGTCTTGAC
AAGGAGCACGGAATTGATGATGGGGCTGGAAATGTATTGTACGATGTAATGCGAAAAGAA
GTTAGGCAAGCTGTTGAGGAAATAAGGAATCAGCTTGAAGAGGCCATGACAAAATCTGAA
CCTTCAGAAAAGGCAATAAACAGTGATGCACAACCAACCCAAGTTATTACTCAGCTCCGA
AGGAGCTACACTAGTAAATTGGAAGAGTCAGAGAAGCGGAAGCAGGAACTGTTAGCTCAA
TTGGCAGCAGAAGAACACCATGGTCATGAGCTCACAAAAATAGTTAGAGAATTGCTACCT
ACTCCTAAAAAGACTGCAAACTTACAAAGACAGCCACACTACAGAAGAAGGAGCAATGAT
AGATCAAGGATGTCAAAACGACTTACTGAAGAGGCTGAACAATACTTTGAAGATTTCCTG
TCGAATGTTGAAGACACTGACTTTTCTTCTTTTGATGGAGAGAAAAGTGACTCAAGTTCA
ACCAGGAAAGACCTGTTGTTACTTCATGCTATGACAGAAACTCCAGTTAAGCTCCCAGAA
GTTGCTTTACCTGCAGAGGCAGATGGCGTTGTCCTTCCCTGGCTGCAATGGGAAACTACC
AATGACTTTCAGACCTCCCCGTGCAAAACCAAGGCCCAGGGAGAAAGTACCAGAGGCAGC
ACTAGCAATCAGACTGCGAGCAGCCGTGGGAGTTGGAGCCCTGGAGACCATGCCACTTCA
TCAGTTGCCTCTAAAAATAGTTTACTGACCAGATTTGGTGAGGTTGGGATTTGCCGAAGC
AGCTTGTCTGACTATGCTCGAACCTTGTCGTTTCACATCGACGACTATTTGCATTTAAGG
CAGAGTGAGGATCTCCTCTTGGAGACGTGGATGCAGAAACAAAGGATCGACTCTGGCGGC
CTAGTCCTGTGCAGTAAATCGACGATATTGTAG

Peptide Sequence

PEP ID

Zm00001d046788_P002
PEP Infomation

pep chromosome:B73_RefGen_v4:9:106003316:106008536:-1 gene:Zm00001d046788 transcript:Zm00001d046788_T002 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

MAAATAFRSGTRRGDALAPVEDAGSATRERQAAGRGGGSVRRSKSLSRFPPPSPSTEDTA
TPSSRFVNKVRGGGSGGVFPPQVSLDDLADEFFRARAESEDDDDEETAARGRSRLPAAAE
RGGGGAGGRRSSTARYARQTESSRQRGRSVSRPPAERRGVAANAVDGGPAARRQRYASVD
RRAAMDRQRWCDSDNDMEVPHQYVSRGMHTKSSSGNSLQSSFHKPSKANQALKRSTSQKD
FFHSRDSSSSHSSITDDESRSSLSFHSRNQKAVCAVYGLDKEHGIDDGAGNVLYDVMRKE
VRQAVEEIRNQLEEAMTKSEPSEKAINSDAQPTQVITQLRRSYTSKLEESEKRKQELLAQ
LAAEEHHGHELTKIVRELLPTPKKTANLQRQPHYRRRSNDRSRMSKRLTEEAEQYFEDFL
SNVEDTDFSSFDGEKSDSSSTRKDLLLLHAMTETPVKLPEVALPAEADGVVLPWLQWETT
NDFQTSPCKTKAQGESTRGSTSNQTASSRGSWSPGDHATSSVASKNSLLTRFGEVGICRS
SLSDYARTLSFHIDDYLHLRQSEDLLLETWMQKQRIDSGGLVLCSKSTIL

Transcript Sequence

Transcript ID

Zm00001d046788_T002
Transcript Infomation

cdna chromosome:B73_RefGen_v4:9:106003316:106008536:-1 gene:Zm00001d046788 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

ACGCCCGCCCGCTTTGGTTTGTTTGTCTCACTTGTCCCGTGTTCGGTGGTCACGGTCGAG
CCGAGCGGCGAGACCGCGAGAGGAGAGAACAACGCAGGCTGCAGGCAGTGGTCCGTCACG
CTGCCACGGTGCAACGACACCCAACCAACTACCAGGATCCCGTGTGCCAACTGCCTGCCT
GCTGTTGTAGAGCCTCGTAAATTCCCCTTGAAACACGGCCGCAAGTTTGAAATTCAAATT
CACTCACCAGCACCTGCAAACCCAGGCATTCATTACTCCCACCGCCCAGCAGCCAGCACC
AATGAAATATGGGTCCAGTCACAAGGAGGGGAGCGAGGCGGCGGCCAACACCTAGCAGCT
CCGAACCCTAGCTCCGGCCACTGGCGGCGATGGCTGCTGCTACGGCGTTCCGGTCGGGGA
CGAGGCGGGGCGACGCTCTCGCGCCCGTAGAGGACGCGGGCTCCGCCACTCGCGAGCGCC
AGGCCGCGGGCCGCGGCGGAGGCAGCGTCCGCCGGTCGAAGAGCCTGAGCCGGTTCCCGC
CGCCGTCGCCCTCCACCGAGGACACGGCGACGCCGTCGTCGAGGTTCGTCAACAAGGTGC
GGGGCGGGGGAAGCGGCGGCGTCTTCCCGCCGCAGGTCAGCCTCGACGACCTCGCCGACG
AGTTCTTCCGGGCCAGGGCCGAGTCCGAGGACGACGACGACGAGGAGACTGCTGCGCGCG
GCCGGTCAAGGCTTCCAGCGGCCGCAGAGCGTGGGGGCGGTGGCGCTGGCGGTCGGCGGA
GCTCCACCGCGCGGTACGCTAGGCAGACGGAGTCTTCGCGGCAGCGCGGGCGCTCCGTGT
CGCGGCCGCCAGCCGAGCGGCGAGGCGTAGCGGCCAATGCGGTGGATGGCGGCCCTGCAG
CCAGGAGGCAGCGTTATGCGTCGGTCGACCGGCGCGCTGCCATGGATCGACAACGGTGGT
GCGATTCGGATAATGATATGGAAGTTCCTCACCAGTATGTTTCTAGGGGGATGCATACCA
AAAGTAGCAGTGGCAATAGCCTGCAGAGTTCATTCCATAAGCCATCTAAAGCAAATCAAG
CTTTGAAGAGGTCTACAAGTCAAAAGGATTTCTTTCATTCTAGAGACAGCAGCTCCAGCC
ATTCTTCAATTACTGATGATGAGTCTAGGAGTTCACTCTCTTTCCATAGCAGAAATCAGA
AGGCTGTCTGTGCAGTTTATGGTCTTGACAAGGAGCACGGAATTGATGATGGGGCTGGAA
ATGTATTGTACGATGTAATGCGAAAAGAAGTTAGGCAAGCTGTTGAGGAAATAAGGAATC
AGCTTGAAGAGGCCATGACAAAATCTGAACCTTCAGAAAAGGCAATAAACAGTGATGCAC
AACCAACCCAAGTTATTACTCAGCTCCGAAGGAGCTACACTAGTAAATTGGAAGAGTCAG
AGAAGCGGAAGCAGGAACTGTTAGCTCAATTGGCAGCAGAAGAACACCATGGTCATGAGC
TCACAAAAATAGTTAGAGAATTGCTACCTACTCCTAAAAAGACTGCAAACTTACAAAGAC
AGCCACACTACAGAAGAAGGAGCAATGATAGATCAAGGATGTCAAAACGACTTACTGAAG
AGGCTGAACAATACTTTGAAGATTTCCTGTCGAATGTTGAAGACACTGACTTTTCTTCTT
TTGATGGAGAGAAAAGTGACTCAAGTTCAACCAGGAAAGACCTGTTGTTACTTCATGCTA
TGACAGAAACTCCAGTTAAGCTCCCAGAAGTTGCTTTACCTGCAGAGGCAGATGGCGTTG
TCCTTCCCTGGCTGCAATGGGAAACTACCAATGACTTTCAGACCTCCCCGTGCAAAACCA
AGGCCCAGGGAGAAAGTACCAGAGGCAGCACTAGCAATCAGACTGCGAGCAGCCGTGGGA
GTTGGAGCCCTGGAGACCATGCCACTTCATCAGTTGCCTCTAAAAATAGTTTACTGACCA
GATTTGGTGAGGTTGGGATTTGCCGAAGCAGCTTGTCTGACTATGCTCGAACCTTGTCGT
TTCACATCGACGACTATTTGCATTTAAGGCAGAGTGAGGATCTCCTCTTGGAGACGTGGA
TGCAGAAACAAAGGATCGACTCTGGCGGCCTAGTCCTGTGCAGTAAATCGACGATATTGT
AGAGTGCAGCCAAATAGGTAGTTGATGGGGTTGAGTTAGACTAATAATTGCTTGGATTTT
TACCTTTAGCTGCCATGGCTCCTGCCGCCTAGTGTGTATAGATGCATGCATTATAGTTAA
CAGATTGGATAAGCTTTTTTTAACGCTTCATCGTGATTAAGAAAATTTATTTTTTACACC
ATCATTCTGCAAGTGCAAATGATCCACG