Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d046722_T009
CDS Infomation

cds chromosome:B73_RefGen_v4:9:103552986:103559040:1 gene:Zm00001d046722 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein MICRORCHIDIA 7
Sequence

ATGAAACTCGGAAAAGATGCAATTGTTCTCACACAAACTAAATCCTCCAGATCGGTGGCC
TTTCTTTCTCAGTCTTTTAATGAAGAAAAGGATAATCTTGAGATCCCTGTGGTGGCATAT
CGAAAGGAAGGGCAGTATATGGAAGTTGATTTGAGTGTGCAGTCTGATGCTACTGCAGAA
TATAACTTGAACGCTATTAAGAATTTTTCTTCCTTCAACGAGTATTTCATTGGAGAAAAG
TTGGGCCTATTTGGTGAAGATACTGGGACACAAATCTACATATGGAATTTAGACACATGG
GGTACTGATTACACATTGGAGTGGAATTCTGGTAAGTCTTCAGAAAATCCTGTGCACCAT
GGTCGTGGAGACATATTAATCCGTTCAAGAAGAGTCAGATCACGTCCAGGACAAACAAGT
AACAAGGTGCTGTTGGATTATTCTCTTCAGTCCTATCTGGAAGTTATGTTCTTGAATCCT
CGGATGAAGATATCTGTCCAAGGGTCTTTGGTCAAAAGCCGCCCGTTGGCGAAGACCCTT
AACAAGACTTCTGTTGTGTCTGGTGAAATTATGGAAAGGACTATTATATTGACTCTGGGA
AGGAGCAAGGTAGAATGGGACAGAACAAACTGTGGAATCTTCTTGTATTGGCATGGTCGT
TTGATAGAGTCTTACAAGCGGGTTGGAGGCCAAAAGCATAGTACTGACATGGGGCGTGGA
GTAATAGGAGTTGCAGATATCACAAATCTCATTGATGATGAAGATGGTAATTCATGGGTT
CTGAACAATAAACAGGGATTTCAAGATTGTGAAATGTATGCTAAACTGGAGGAGTGGCTT
GGTAGGAAAGTGGATGAATACTGGGATACGAAATTTGACAGTCTCACGCTGAGAAAAGGG
GATGAGCACCACAATACTGATTCTGACTGGGTTCAGTGCTACAGCTGTCGTAAATGGAGA
ATGTTGAATGCAGGCTTCAATGTAGACAATCTTCCTGAGGAATGGTTCTGCTACATGCCA
CCATTCAATGGCAAATGTGAGATTCCTGAACAACAAGCGGGACCAGACATCATTGTGATA
GGTGAGAAGAGATCTGGACATGATGAACAAAAAAAGGCTGCCCTGCAAGGAGGTACACCG
GAGGAGGAAATGAGGCATGAGAACCACGAGATTCAGATGATTACTCAAGATGAATTTGTG
AAGAATGTTCAGGATATGCCGGAGGTTGTCCACAAGCGAAAGAAAATTTCAAGTGGCACC
CCATCAAAGCCCCAAAAAAACCGCGATGATGATCTGGAAGGCGTGTCCTCACAAACTGAA
GATGACGTCCCTCTCACTAGGTTAAAGAGGCTAAGGAGAGGGCCTGCAAGGACTAACAAA
AGGTGA

Peptide Sequence

PEP ID

Zm00001d046722_P009
PEP Infomation

pep chromosome:B73_RefGen_v4:9:103552986:103559040:1 gene:Zm00001d046722 transcript:Zm00001d046722_T009 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein MICRORCHIDIA 7
Sequence

MKLGKDAIVLTQTKSSRSVAFLSQSFNEEKDNLEIPVVAYRKEGQYMEVDLSVQSDATAE
YNLNAIKNFSSFNEYFIGEKLGLFGEDTGTQIYIWNLDTWGTDYTLEWNSGKSSENPVHH
GRGDILIRSRRVRSRPGQTSNKVLLDYSLQSYLEVMFLNPRMKISVQGSLVKSRPLAKTL
NKTSVVSGEIMERTIILTLGRSKVEWDRTNCGIFLYWHGRLIESYKRVGGQKHSTDMGRG
VIGVADITNLIDDEDGNSWVLNNKQGFQDCEMYAKLEEWLGRKVDEYWDTKFDSLTLRKG
DEHHNTDSDWVQCYSCRKWRMLNAGFNVDNLPEEWFCYMPPFNGKCEIPEQQAGPDIIVI
GEKRSGHDEQKKAALQGGTPEEEMRHENHEIQMITQDEFVKNVQDMPEVVHKRKKISSGT
PSKPQKNRDDDLEGVSSQTEDDVPLTRLKRLRRGPARTNKR

Transcript Sequence

Transcript ID

Zm00001d046722_T009
Transcript Infomation

cdna chromosome:B73_RefGen_v4:9:103552986:103559040:1 gene:Zm00001d046722 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein MICRORCHIDIA 7
Sequence

GCTTTCCAATTAGGCAGTCTATCTGCAATCTTGTCAACCCAATTCATCAATATATTCCTG
TTAAGCTTCTTATCTGAAATAGTCAGCCCCAAATAAGTGCAAGGGAAGGAAGAAGAGGAG
CTTATAGAATGTTACACCCTTCATGCAGCAAATCATCTTCACATCTTATTGGGATTGCTC
AACTCTTGTGCAAATTAGTTACTGAGCGTGAAGCTTCCCCAAAGCAGTCAAGAATGAGCT
TGACACAGTTTAGCTCCTCCTCTCTAGGCTTGATAAACAAGACTACATCATCTGCATACA
GTGATAATCTAGTCTTCACATTGGCACCTTCCAGACTAGCCAAATTTTTTGAGCTATCTT
CTGTTTGATTCTTTATTTGGATCATTACTTTTTAATTGTGTTGTGTCACACGTGGTTGAA
CTTGATATGCAATAAACTACACCGTATTTCCTTCATGACATCAGGGAAACGTGTGAATAG
TAATGTGATGAATGCTTCAAAGAGGCCTTTTAAGAGTGACTTTCAATATGGTTCAAGAAA
CTCTAAGCCACCACACTTTAAAGAGGAGGTCTGTGATAGTTTACTGAAGCCCAAGAAGAT
GGAAACTTCACCTAAGCATTATGATCCTTTCGTCACAGAACACCATAGACTAGTTCTGGA
ATCCTCTCCATGTGAATCTGTTGAAGACAGCCCAAGAGTTTTGAATCCGGTGGTAAAAAA
GAGAATGGCTTCTCCTACCAAAAATTTCATTGTTGCAGACCCTAGTTATCTGCGAACACT
TAGTCAGACACATGCTAGCTGGATATTTGGAGCGATAGCTGAGCTCATTGATAATTCCAG
AGATGCTGGTGCATCAAGGTATGCTCATCTTTCAGGATTCTGTAATCAGAATATTTTGTT
CTTTTATTTTTGCAATCAGTTTGGGTCCTGTTTATAATCTGTGTAATGTGTTGTGCTGTA
TTAGCCTTTTTAAAATTGAAATATTCTCATGTGAGTATGTGGCTGTAAGAGGTTCTCAGT
TTGTTTATATTTGAAAGAAAAAGAAAATGATCTCTTAACAGAAAAATCAAACTCTAGTTT
AAAGAGTCACCATAGTGTCAACATGTTCTATTTGTAGTTTTCAGAATTCTCTTGCATGAG
ACACCAAACTGTCTTGTATGTTTGTAGTTTATTTTCTATTTTCAGTTATTCCTATTTCAC
CATGCTAATCAGTGTTTTTAAAGCGTAACTGCGTAAGGTGAGGCAAGGCGTTGGACCGCC
GCCTGGACGCCTAGGTGGCGCCTAGGTGGGCAAGGCACCTAGGATTTCTGGGCACTGGCC
TACCGCCTGGACGCCTAGGCGACGCCTTAGAAACATTGATGCTAATTACTTGTTTCTTAT
TGTTATTTATATCATGGAAGGTTGAGTATTTCCATCGAGCATTTGTTTTCAAAGAAAGCA
CAGAAGAAAATTCCTGTCTTATCTGTAATTGATGATGGACATGGAATGACATATCCTGAC
ATCATGAGAATGATCTCTTTTGGCCATAAACGACCAAATGGACATCGTGAGGATCAGATT
GGAAGATTTGGCATTGGATTCAAGGTAGAAAGTTCTCAGTTGAAGATGGCTTCATCTTCC
TCTATTTCAGTGTTTCTACTCAAAGGCACAGTTTTAGATTGCACTGTAGTCCTATCTTCG
GTGATGTGGTGCTTTATCTCACCTAAACTTTCAAATTCCAGTGATGAACACAACATTTTC
TATTACCTTCCTTCCGAATTATAAGGCATTTTGGCTTTTCTAGATACATAACTTCTGCTA
TATATTTAGATATGCACTATGTCTAGGTACATAGCAAAAGTTCTGTATTTAGAAAAACCA
AAATGTCTTATAATGTGGAATGGAGGGAGTATTATTTTCACGGGACTGAAGCAGTTTTAT
CTGAAGGCTCTTAGTTGTGTGACACTGAGAATTTGTTTCTATATTATTCAACAGTCGCAG
AAGATATGTTCATTGATAAATATCTACATTCGTCATTTCTGTTAGCTAGCTTTTTTCTTT
CCTGCCTGGCGCTATCCTTCAAGTTGATATACACTCCATCATTTCTGCCTTAAAAGCTCA
CATGAATGAAAATGCCTATTGTTTGTTTCAATGTTTTCAAGTCGGACGACTTGCTGGCTG
ACCGACTTGGGCGAGTAATCGTGATTAATCACGATTAGTCGGATGACTTGGCGATTAATC
GCTATTTTCCCGAACCGACTTGGACGACCTGGTGAATATTACAATTATCAGTTCAGAGTT
TCTGGTTCCATGATTCATAGCTGTCCTAGCGCTGCAAACAGTACTTCAATGATTCAATCA
TGCATGCAGTCTCAGCTGATCATTTTTGTTCGCATACAGAGTTATATTGTATGAAGATTG
CTGTTGTTACTAATTTTGTTTCTATTTTCTTTGCGGTACATGTAGACTGGTGCTATGAAA
CTCGGAAAAGATGCAATTGTTCTCACACAAACTAAATCCTCCAGATCGGTGGCCTTTCTT
TCTCAGTCTTTTAATGAAGAAAAGGATAATCTTGAGATCCCTGTGGTGGCATATCGAAAG
GAAGGGCAGTATATGGAAGTTGATTTGAGTGTGCAGTCTGATGCTACTGCAGAATATAAC
TTGAACGCTATTAAGAATTTTTCTTCCTTCAACGAGTATTTCATTGGAGAAAAGTTGGGC
CTATTTGGTGAAGATACTGGGACACAAATCTACATATGGAATTTAGACACATGGGGTACT
GATTACACATTGGAGTGGAATTCTGGTAAGTCTTCAGAAAATCCTGTGCACCATGGTCGT
GGAGACATATTAATCCGTTCAAGAAGAGTCAGATCACGTCCAGGACAAACAAGTAACAAG
GTGCTGTTGGATTATTCTCTTCAGTCCTATCTGGAAGTTATGTTCTTGAATCCTCGGATG
AAGATATCTGTCCAAGGGTCTTTGGTCAAAAGCCGCCCGTTGGCGAAGACCCTTAACAAG
ACTTCTGTTGTGTCTGGTGAAATTATGGAAAGGACTATTATATTGACTCTGGGAAGGAGC
AAGGTAGAATGGGACAGAACAAACTGTGGAATCTTCTTGTATTGGCATGGTCGTTTGATA
GAGTCTTACAAGCGGGTTGGAGGCCAAAAGCATAGTACTGACATGGGGCGTGGAGTAATA
GGAGTTGCAGATATCACAAATCTCATTGATGATGAAGATGGTAATTCATGGGTTCTGAAC
AATAAACAGGGATTTCAAGATTGTGAAATGTATGCTAAACTGGAGGAGTGGCTTGGTAGG
AAAGTGGATGAATACTGGGATACGAAATTTGACAGTCTCACGCTGAGAAAAGGGGATGAG
CACCACAATACTGATTCTGACTGGGTTCAGTGCTACAGCTGTCGTAAATGGAGAATGTTG
AATGCAGGCTTCAATGTAGACAATCTTCCTGAGGAATGGTTCTGCTACATGCCACCATTC
AATGGCAAATGTGAGATTCCTGAACAACAAGCGGGACCAGACATCATTGTGATAGGTGAG
AAGAGATCTGGACATGATGAACAAAAAAAGGCTGCCCTGCAAGGAGGTACACCGGAGGAG
GAAATGAGGCATGAGAACCACGAGATTCAGATGATTACTCAAGATGAATTTGTGAAGAAT
GTTCAGGATATGCCGGAGGTTGTCCACAAGCGAAAGAAAATTTCAAGTGGCACCCCATCA
AAGCCCCAAAAAAACCGCGATGATGATCTGGAAGGCGTGTCCTCACAAACTGAAGATGAC
GTCCCTCTCACTAGGTTAAAGAGGCTAAGGAGAGGGCCTGCAAGGACTAACAAAAGGTGA
CAGAAAGTGAAAATACACGCCGGTGCAATGCTTCATTTGGACTGGACGGATTTTGGACTT
AACGAGACTGATGCATGAATCATGATGACATGAGACCTTCGTTTAGCACACTGCCAGCTA
TAATTCTCTAGCTTTTGTGTAGTAGAATTTGGAAACATGCGTTGCTGTTGGATTAGGCGT
CTGTTTGTAAATAGGTGTCCCTCGCATTCAAATGTTGCAGCTTAGGCCCTGGGATCCATT
AGCTACTATTAGTTAGCTAGCTAATAGACTAAGGGGGTGTTTGAATGTATTAGAGCTAAT
AGTTAGTTAGCTAAAA