Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d046683_T017
CDS Infomation

cds chromosome:B73_RefGen_v4:9:102313635:102321674:1 gene:Zm00001d046683 gene_biotype:protein_coding transcript_biotype:protein_coding description:Stromal processing peptidase chloroplastic
Sequence

ATGGGAGAAATGACCCGTTACATGGATGCACTGATAAAAGATAGTGAACAGCTTGCTATG
ATGATTGACAGTGTTCCCTCAGTTGACAACTTGGACTTCATCATGGAGAGTGATGCACTT
GGCCACACTGTCATGGATCAGTTGCAGGGACATGAAAGTTTGCTTGCAGTAGCTGAAACT
GTCACCCTTGAAGAGGTCAATACTGTTGGTGCGGAAGTATTGGAATTCATTTCAGATTTT
GGAAAACCCAATGCTCCCCTTCCTGCTGCTATTGTGGCATGTGTACCCAAAAAGGTACAT
GTTGATGACATAGGTGAAACTGAATTTGAGATATATCCAGAAGAAATCACTGAGGCTATC
AAGGCAGGTCTTGAGGAACCTATTTACCCAGAGCCTGAGCTTGAGGTGCCAAAGGAATTG
ATCACTCAATCAAAGCTCGATGAACTGAAATTGCAACACAATCCATCATTTGTTCCTTTA
ACCAAAGAGGAGAATGCGGTGAAAGTGTTTGACAGTGAAACTGGTATATCACAACGCCGT
CTTTCTAACGGAATTTCCATCAACTACAAGATTACACAAAATGAAGCTAGGGTTGGTGTC
ATGCGGCTCATAGTAGGGGGAGGGAGAGCGACAGAAGATTCTGAATCAAAGGGATCTGTC
ATTGTTGGTGTTCGTTCCCTGAGTGAAGGTGGCTGTGTTGGTAACTTTTCTAGGGAACAG
GTTGAACTTTTCTGCGTCAATAACCTTATCAACTGCTCACTGGAATCAAATGAGGAATTC
ATATTTATGGAATTTAGATTTGCTTTAAGAGACAATGGCATGCGTGCTGCTTTCCAACTC
CTTCATATGGTCCTTGAGCATAATGTATGGCTAGAAGATGCATTTGATAGAGCAATCCAG
TTATATTTGTCTTACTATCGCTCTATCCCCAAAAGTTTGGAACGTTCTACAGCTCATAAG
CTTATGTTAGCCATGCTAAACCATGATGAAAGGTTTGTAGAGCCATCGCCACATTCACTG
CAGAAGTTGACTCTTCAGTCAGTTAAAGATGCTGTCATGAACCAGTTTGTGGGTAGCAAC
ATGGAGGTTTGTGAATTGCTTTTTCCTCGTATTTCTTCACTTTTCTCTTCAAATGTTCTT
ATTGCACCTATACTTGCTCCAACATATGTTCAATTAATAACTTTCTTTGTTCATTTAATT
TTGTATCACTTCACTTTTCAGGTCAGCATTGTTGGTGATTTCACTGAAGAAGAAGTAGAA
TCTTGTGTTCTTGATTATCTTGGGACTGTGAGGGCTTCAAGTTCTCCAACCATAGAGGAG
CGTATTGAAAAGATTTCCTTTCGACCATTTCCATCAGATGTTCATTTCCAGCAAGTATAC
ATAAAGGACACAGACGAGAGAGCCTGTGCATATATTGCAGGCCCTGCTCCTAACCGTTGG
GGGTTCGCTACTGAAGGAAATGACCTATTTAATGTCATTCAGAGATCTGACGCTGATGCA
GAAATATCTGAACCAGTAAGCTTGGATCTAACAGGGAAGAGACACATCAATGTTCGCAGC
CACCCTCTTTTCTTTGGCATCACTTTGAGTCTGCTTGCTGAAATTATCAATTCTAGGCTA
TTTACAACAGTTCGAGATTCCATGGGATTAACATATGATGTTTCTTTTGAATTGAACCTT
TTTGACAAATTGGATCTTGGTTGGTATGTGATCGCAGTCACTTCAACTCCAAGCAAGGTC
CATAAAGCTGTTGATGCCTGCAAAGGTGTTCTGAGAGGATTGCATAGTAGCCGAATTGTG
GAAAGGGAGCTCGATCGGGCAAAGAGGACACTGTTGATGAAACATGAAGCTGAGACGAAG
ACAAACGCCTACTGGCTTGGTTTGCTTGCCCATCTACAATCTTCATCTGTACCAAGAAAG
GATGTATCATGCATCAAGGAATTGACGACATTATATGAAAATGCAACGATTGAGGATCTG
TATATTGCATATGAGCACCTGAAAGTTGACGATTCTTCTTTGTTTGCTTGCATTGGGATT
GCTGGCGCTGAATCTGGTGAAGATACAAACGATGACGAGCCTGATGTGGATCTTCATGGC
ATGGGTCCCATGGGAGGCCGGGGTCTTTCAACAATGACCAGACCAACCACATGA

Peptide Sequence

PEP ID

Zm00001d046683_P017
PEP Infomation

pep chromosome:B73_RefGen_v4:9:102313635:102321674:1 gene:Zm00001d046683 transcript:Zm00001d046683_T017 gene_biotype:protein_coding transcript_biotype:protein_coding description:Stromal processing peptidase chloroplastic
Sequence

MGEMTRYMDALIKDSEQLAMMIDSVPSVDNLDFIMESDALGHTVMDQLQGHESLLAVAET
VTLEEVNTVGAEVLEFISDFGKPNAPLPAAIVACVPKKVHVDDIGETEFEIYPEEITEAI
KAGLEEPIYPEPELEVPKELITQSKLDELKLQHNPSFVPLTKEENAVKVFDSETGISQRR
LSNGISINYKITQNEARVGVMRLIVGGGRATEDSESKGSVIVGVRSLSEGGCVGNFSREQ
VELFCVNNLINCSLESNEEFIFMEFRFALRDNGMRAAFQLLHMVLEHNVWLEDAFDRAIQ
LYLSYYRSIPKSLERSTAHKLMLAMLNHDERFVEPSPHSLQKLTLQSVKDAVMNQFVGSN
MEVCELLFPRISSLFSSNVLIAPILAPTYVQLITFFVHLILYHFTFQVSIVGDFTEEEVE
SCVLDYLGTVRASSSPTIEERIEKISFRPFPSDVHFQQVYIKDTDERACAYIAGPAPNRW
GFATEGNDLFNVIQRSDADAEISEPVSLDLTGKRHINVRSHPLFFGITLSLLAEIINSRL
FTTVRDSMGLTYDVSFELNLFDKLDLGWYVIAVTSTPSKVHKAVDACKGVLRGLHSSRIV
ERELDRAKRTLLMKHEAETKTNAYWLGLLAHLQSSSVPRKDVSCIKELTTLYENATIEDL
YIAYEHLKVDDSSLFACIGIAGAESGEDTNDDEPDVDLHGMGPMGGRGLSTMTRPTT

Transcript Sequence

Transcript ID

Zm00001d046683_T017
Transcript Infomation

cdna chromosome:B73_RefGen_v4:9:102313635:102321674:1 gene:Zm00001d046683 gene_biotype:protein_coding transcript_biotype:protein_coding description:Stromal processing peptidase chloroplastic
Sequence

AGTAACTGGTGCTTAGCCTAGCCCAAGACTGAATTAGACTCAAGAACACCTAAACCATGT
TTGAACCAGGTCAAATTCTCTCCTAAATCATGCTTTGCTTCCCTCTAGTGATATTCCAAA
TTCAAGGGACTTCAACTGATGTATGAGTATTACTTGGTAATGGAGCAATGACCACCATCT
AATTTTATCATTGTGGTGCTATAGCTTAATTGGTTTTACATTCAGTTCTATATATACAAT
AGAAATAAAATGCATTCTGCACAATGGCTTGACCTATATTTTTTTGAAATGAACCGGCAG
GAGAGCTGCCTGTTATACTAAAAAGCAGAGAAACCTGATAGGCACTGTCAGAGGCTTGAC
CTATATTTGCACTAGTGACAATTTCATGTGTTTTGTTCTTTTTGCAACATATCTTTGTGC
TATTTCAGGTGCGAAGGCTGAAAGAATTTGGTGTTACAATGGGAGAAATGACCCGTTACA
TGGATGCACTGATAAAAGATAGTGAACAGCTTGCTATGATGATTGACAGTGTTCCCTCAG
TTGACAACTTGGACTTCATCATGGAGAGTGATGCACTTGGCCACACTGTCATGGATCAGT
TGCAGGGACATGAAAGTTTGCTTGCAGTAGCTGAAACTGTCACCCTTGAAGAGGTCAATA
CTGTTGGTGCGGAAGTATTGGAATTCATTTCAGATTTTGGAAAACCCAATGCTCCCCTTC
CTGCTGCTATTGTGGCATGTGTACCCAAAAAGGTACATGTTGATGACATAGGTGAAACTG
AATTTGAGATATATCCAGAAGAAATCACTGAGGCTATCAAGGCAGGTCTTGAGGAACCTA
TTTACCCAGAGCCTGAGCTTGAGGTGCCAAAGGAATTGATCACTCAATCAAAGCTCGATG
AACTGAAATTGCAACACAATCCATCATTTGTTCCTTTAACCAAAGAGGAGAATGCGGTGA
AAGTGTTTGACAGTGAAACTGGTATATCACAACGCCGTCTTTCTAACGGAATTTCCATCA
ACTACAAGATTACACAAAATGAAGCTAGGGTTGGTGTCATGCGGCTCATAGTAGGGGGAG
GGAGAGCGACAGAAGATTCTGAATCAAAGGGATCTGTCATTGTTGGTGTTCGTTCCCTGA
GTGAAGGTGGCTGTGTTGGTAACTTTTCTAGGGAACAGGTTGAACTTTTCTGCGTCAATA
ACCTTATCAACTGCTCACTGGAATCAAATGAGGAATTCATATTTATGGAATTTAGATTTG
CTTTAAGAGACAATGGCATGCGTGCTGCTTTCCAACTCCTTCATATGGTCCTTGAGCATA
ATGTATGGCTAGAAGATGCATTTGATAGAGCAATCCAGTTATATTTGTCTTACTATCGCT
CTATCCCCAAAAGTTTGGAACGTTCTACAGCTCATAAGCTTATGTTAGCCATGCTAAACC
ATGATGAAAGGTTTGTAGAGCCATCGCCACATTCACTGCAGAAGTTGACTCTTCAGTCAG
TTAAAGATGCTGTCATGAACCAGTTTGTGGGTAGCAACATGGAGGTTTGTGAATTGCTTT
TTCCTCGTATTTCTTCACTTTTCTCTTCAAATGTTCTTATTGCACCTATACTTGCTCCAA
CATATGTTCAATTAATAACTTTCTTTGTTCATTTAATTTTGTATCACTTCACTTTTCAGG
TCAGCATTGTTGGTGATTTCACTGAAGAAGAAGTAGAATCTTGTGTTCTTGATTATCTTG
GGACTGTGAGGGCTTCAAGTTCTCCAACCATAGAGGAGCGTATTGAAAAGATTTCCTTTC
GACCATTTCCATCAGATGTTCATTTCCAGCAAGTATACATAAAGGACACAGACGAGAGAG
CCTGTGCATATATTGCAGGCCCTGCTCCTAACCGTTGGGGGTTCGCTACTGAAGGAAATG
ACCTATTTAATGTCATTCAGAGATCTGACGCTGATGCAGAAATATCTGAACCAGTAAGCT
TGGATCTAACAGGGAAGAGACACATCAATGTTCGCAGCCACCCTCTTTTCTTTGGCATCA
CTTTGAGTCTGCTTGCTGAAATTATCAATTCTAGGCTATTTACAACAGTTCGAGATTCCA
TGGGATTAACATATGATGTTTCTTTTGAATTGAACCTTTTTGACAAATTGGATCTTGGTT
GGTATGTGATCGCAGTCACTTCAACTCCAAGCAAGGTCCATAAAGCTGTTGATGCCTGCA
AAGGTGTTCTGAGAGGATTGCATAGTAGCCGAATTGTGGAAAGGGAGCTCGATCGGGCAA
AGAGGACACTGTTGATGAAACATGAAGCTGAGACGAAGACAAACGCCTACTGGCTTGGTT
TGCTTGCCCATCTACAATCTTCATCTGTACCAAGAAAGGATGTATCATGCATCAAGGAAT
TGACGACATTATATGAAAATGCAACGATTGAGGATCTGTATATTGCATATGAGCACCTGA
AAGTTGACGATTCTTCTTTGTTTGCTTGCATTGGGATTGCTGGCGCTGAATCTGGTGAAG
ATACAAACGATGACGAGCCTGATGTGGATCTTCATGGCATGGGTCCCATGGGAGGCCGGG
GTCTTTCAACAATGACCAGACCAACCACATGATCACCATTGGGATGGCCAACCCTTCCAA
GGTGAGATATTAAACGCTGTGTGTTACTGCACCGTGGACAAGTTGTGCTGAAACCTTCTA
CTCGAAATGGTTGTGGATCTTTATAGGGATTAACCTTGCTCCCCAAGACAGGGAGTCACA
TGGCCCTAGGAGACTGCATGTTGACTGTCGTTTCCCAGCAAAACTGTTTAAAGATAATTC
AAGCATTTGATCTGGATCTGGAAGACTATTATATCCTGAGCCACAACCAAAAGCTTGGTG
GCTGCATTTTTTCCCCGAGGAGCGTTGAGTTAATGACTCAGCAAGGTCGTGAAAAAGAAT
TTATTGTTTGAGGTCATGTAGCTTCACATGTACAGTAAAAGCAGGTTGGTTCTTGCATAC
AGTTGTTGTAACTAGTGCGTTCAGGGCATTGAAGATAGGATGACAGTAGATCACAGACGT
TGCTGGGCTGCGAATAGCGTAAGTGGCGCTAACACGCAGGCATGTAACATTTTTGTGTTA
TTCTTTT