Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d046672_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:9:101701192:101705340:1 gene:Zm00001d046672 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

ATGGGGAAGGGACAAATATTAGCTGTTCTTCAAATAGGTGGAGAATTCAACACCGATGAA
GATGGACACATGTCATATTCTGGTGGAGAGGCACATGCTATGCATGTTCAAAGTGACTGG
ACTTTTAGTGCATTTAAGCAAGAGATATCGTCAACACTTAACAATCTGAAGCTTGACCAG
TTTGCATTCAAGTATTTCCTTCCAAAGAATGATAAAACTTTGATCTCTATTTCCAATGAC
AAGGACCTACGACGCATGGTTGAATTCCATGCGGAGTCAGATTCGACATACATTTATGTC
ATGAAGAAAGCTGACAACAGATCAAAGAACATTGTTGCTGTCTTGGACACTCCCACAGAT
GCCTTTGCGATTGTCCCAACAACTCAGGATGGGTCTAAGAGACAAAAGGTTTGTGCAAGT
TGGAAGAATGTGATAACTGGAGTTGGCCAAGTGTTTGAAGGACCTAAGGATTTCCGTGAT
GCCTTACATAAGTATGCCATTGCACATAGATTCCATTATAGATTTATCAAGAATGACTCA
TCTCGTGTGACTGCTGAATGTACTGGTGAAGGTTGCCCATGGCGAATACATGCTTCTAAG
TCCCCTGCAAAGAAAGAATTTATGGTCAAGAAAATATCTGAAAGCCACACCTGTGAATCT
GAAACAGTCAAAAGCAATCGGTTGGCTTCTCAACGATGGGTTGCTAGTGTCATAAAAGAA
AAGTTGCGTGATAGTCCAAACTACAGGCCAAGAGATATTGCAAATGATCTTCAACGAGAG
TATGGACTATGCCTGAACTATTCACAGGCTTGGCGTGGAAGATCAATTGCTCAGAAGGAA
CTTTATAGTACACACGAAGAGGCCTGCAGTCAGTTGCCTTGGTTTTGTGAAAGGATTGTA
GAGACAAACCCTGGAAGTGTGGCAACTGTAGTGGCCTTGGAAGATTCAAAGTTTCGTTTT
TTTGTTGCATTCCATGCATCGCTCCATGGTTTTGAGCATGGGTGCAGGCCGCTCCTTTTT
CTTGAAGCGATAACTGCAAAGCCGAATAAGCACTGGAAGCTACTGGCTGCTGCTTCAGTT
GATGGTGAAGGTGATGTGTTTCCAGTTGCTTTTGGTGTTGTGGATGACGAGTCGCGTGAA
AATTGGCATTGGTTTCTTGAGCAACTAAAATCTTCACTTGGCACATCTCGAACCATCACA
TTCATATCGAATGGAGAACATGGACTTTGGGATGTATTATCTTCAGTTTTCCAAGAGTGT
CATCATGGCTACTGTGTGGAGTCTCTTATTGAAGAATTTAAGATGCAACTGGATGATGCA
TGGACTGAGGAACTAAAAGATTCGATGGTTGAGCATCTTAAGAAGGCCATAAATTCATGC
ACAGCTGATGAGTTCAATCAGTATATTGAGCTCATCAAAAGTGGTTCTGACAAGCTTGCT
GATTGGCTCTTGGAGATCAAACCTGAGCGATGGTCAGATGCTTTTTTCAAGGGATCACGT
CATGGGCAGTATTCTTGTAATATTTTTGGCACTGTGTCTGAGTGGATTCCCACGAGATAT
GAGCTTTCAGTTGTGCAATTGGTTGACACGATAAGATGCAAGCTGATGGAGATGATGTAC
ACACGCAGAGAGTCTTCCAATGCATGGACTGAGGTATTAACACCGGCAGCCAATCAGAAA
CTTCAGGAAGAGGTGAACAAAGCCCACACCCTCAATGTCCTTCCAGCAGAAAACGGTGAA
AATGGCAATGTGTTTAAGGTCTGTGATGACTCAGTTAATGTTGTCAACCTTGACACATGG
GAATGCACCTGCCAAAGGTGGCATATTTCTGGGCTGCCATGCATGCATGTGATTGCTGTA
TTGGAGCGCACTGGGCAATATGCATATGACTACTGTGTGAAGTACTTCACAACAGAATGC
TACCGCTTGACCTATTCCTTGTCAATAAATCCCATACCTGATGTTATTGTGCCGCCTACA
TTAATCGACTTAGCTCAGAGCCCAGCAACATACCCATGCCCACTGCGAACCCGCCGTCGG
GTTGGCCGGCCAAAAGAGAAGCCTGCTGATCCTCGCATTGCAATCAAGAGGGCAGTGCGC
TGCAGCAGGTGCAAGGGTTATGGACACAACAAGGCAACCTGCAAAGTTCCTATCAGCAGT
TTCAGCACGTAG

Peptide Sequence

PEP ID

Zm00001d046672_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:9:101701192:101705340:1 gene:Zm00001d046672 transcript:Zm00001d046672_T001 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

MGKGQILAVLQIGGEFNTDEDGHMSYSGGEAHAMHVQSDWTFSAFKQEISSTLNNLKLDQ
FAFKYFLPKNDKTLISISNDKDLRRMVEFHAESDSTYIYVMKKADNRSKNIVAVLDTPTD
AFAIVPTTQDGSKRQKVCASWKNVITGVGQVFEGPKDFRDALHKYAIAHRFHYRFIKNDS
SRVTAECTGEGCPWRIHASKSPAKKEFMVKKISESHTCESETVKSNRLASQRWVASVIKE
KLRDSPNYRPRDIANDLQREYGLCLNYSQAWRGRSIAQKELYSTHEEACSQLPWFCERIV
ETNPGSVATVVALEDSKFRFFVAFHASLHGFEHGCRPLLFLEAITAKPNKHWKLLAAASV
DGEGDVFPVAFGVVDDESRENWHWFLEQLKSSLGTSRTITFISNGEHGLWDVLSSVFQEC
HHGYCVESLIEEFKMQLDDAWTEELKDSMVEHLKKAINSCTADEFNQYIELIKSGSDKLA
DWLLEIKPERWSDAFFKGSRHGQYSCNIFGTVSEWIPTRYELSVVQLVDTIRCKLMEMMY
TRRESSNAWTEVLTPAANQKLQEEVNKAHTLNVLPAENGENGNVFKVCDDSVNVVNLDTW
ECTCQRWHISGLPCMHVIAVLERTGQYAYDYCVKYFTTECYRLTYSLSINPIPDVIVPPT
LIDLAQSPATYPCPLRTRRRVGRPKEKPADPRIAIKRAVRCSRCKGYGHNKATCKVPISS
FST

Transcript Sequence

Transcript ID

Zm00001d046672_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:9:101701192:101705340:1 gene:Zm00001d046672 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

GTGACGCGTGGACCCCGCACGCAAACCCTAGATCGGAAGCCGCACCCGGGCACATGACCG
CCTTATCCCCGAGTCAGACCAGCGGCGGCCGGAACCGGGAGCCCCGTTGCTGGCCACGCC
CCCACCGCTCGCGCGCGTCGAGCAGCTTCTCGTCGTAGTTGAGCCTACGCTTGGCGCCTA
CCGCCGGTTCCGCTGCCGGGTGTCCTCCCTTCGTGCCGCTGACACCAGAGGGTAGGATCC
CCGCGCTTTCGACCAGCAGATCCCGCCGCGACCCAGGAAGGAGACACTTATGGGGAAGGG
ACAAATATTAGCTGTTCTTCAAATAGGTGGAGAATTCAACACCGATGAAGATGGACACAT
GTCATATTCTGGTGGAGAGGCACATGCTATGCATGTTCAAAGTGACTGGACTTTTAGTGC
ATTTAAGCAAGAGATATCGTCAACACTTAACAATCTGAAGCTTGACCAGTTTGCATTCAA
GTATTTCCTTCCAAAGAATGATAAAACTTTGATCTCTATTTCCAATGACAAGGACCTACG
ACGCATGGTTGAATTCCATGCGGAGTCAGATTCGACATACATTTATGTCATGAAGAAAGC
TGACAACAGATCAAAGAACATTGTTGCTGTCTTGGACACTCCCACAGATGCCTTTGCGAT
TGTCCCAACAACTCAGGATGGGTCTAAGAGACAAAAGGTTTGTGCAAGTTGGAAGAATGT
GATAACTGGAGTTGGCCAAGTGTTTGAAGGACCTAAGGATTTCCGTGATGCCTTACATAA
GTATGCCATTGCACATAGATTCCATTATAGATTTATCAAGAATGACTCATCTCGTGTGAC
TGCTGAATGTACTGGTGAAGGTTGCCCATGGCGAATACATGCTTCTAAGTCCCCTGCAAA
GAAAGAATTTATGGTCAAGAAAATATCTGAAAGCCACACCTGTGAATCTGAAACAGTCAA
AAGCAATCGGTTGGCTTCTCAACGATGGGTTGCTAGTGTCATAAAAGAAAAGTTGCGTGA
TAGTCCAAACTACAGGCCAAGAGATATTGCAAATGATCTTCAACGAGAGTATGGACTATG
CCTGAACTATTCACAGGCTTGGCGTGGAAGATCAATTGCTCAGAAGGAACTTTATAGTAC
ACACGAAGAGGCCTGCAGTCAGTTGCCTTGGTTTTGTGAAAGGATTGTAGAGACAAACCC
TGGAAGTGTGGCAACTGTAGTGGCCTTGGAAGATTCAAAGTTTCGTTTTTTTGTTGCATT
CCATGCATCGCTCCATGGTTTTGAGCATGGGTGCAGGCCGCTCCTTTTTCTTGAAGCGAT
AACTGCAAAGCCGAATAAGCACTGGAAGCTACTGGCTGCTGCTTCAGTTGATGGTGAAGG
TGATGTGTTTCCAGTTGCTTTTGGTGTTGTGGATGACGAGTCGCGTGAAAATTGGCATTG
GTTTCTTGAGCAACTAAAATCTTCACTTGGCACATCTCGAACCATCACATTCATATCGAA
TGGAGAACATGGACTTTGGGATGTATTATCTTCAGTTTTCCAAGAGTGTCATCATGGCTA
CTGTGTGGAGTCTCTTATTGAAGAATTTAAGATGCAACTGGATGATGCATGGACTGAGGA
ACTAAAAGATTCGATGGTTGAGCATCTTAAGAAGGCCATAAATTCATGCACAGCTGATGA
GTTCAATCAGTATATTGAGCTCATCAAAAGTGGTTCTGACAAGCTTGCTGATTGGCTCTT
GGAGATCAAACCTGAGCGATGGTCAGATGCTTTTTTCAAGGGATCACGTCATGGGCAGTA
TTCTTGTAATATTTTTGGCACTGTGTCTGAGTGGATTCCCACGAGATATGAGCTTTCAGT
TGTGCAATTGGTTGACACGATAAGATGCAAGCTGATGGAGATGATGTACACACGCAGAGA
GTCTTCCAATGCATGGACTGAGGTATTAACACCGGCAGCCAATCAGAAACTTCAGGAAGA
GGTGAACAAAGCCCACACCCTCAATGTCCTTCCAGCAGAAAACGGTGAAAATGGCAATGT
GTTTAAGGTCTGTGATGACTCAGTTAATGTTGTCAACCTTGACACATGGGAATGCACCTG
CCAAAGGTGGCATATTTCTGGGCTGCCATGCATGCATGTGATTGCTGTATTGGAGCGCAC
TGGGCAATATGCATATGACTACTGTGTGAAGTACTTCACAACAGAATGCTACCGCTTGAC
CTATTCCTTGTCAATAAATCCCATACCTGATGTTATTGTGCCGCCTACATTAATCGACTT
AGCTCAGAGCCCAGCAACATACCCATGCCCACTGCGAACCCGCCGTCGGGTTGGCCGGCC
AAAAGAGAAGCCTGCTGATCCTCGCATTGCAATCAAGAGGGCAGTGCGCTGCAGCAGGTG
CAAGGGTTATGGACACAACAAGGCAACCTGCAAAGTTCCTATCAGCAGTTTCAGCACGTA
GTATTTACTCATCAAATCAGTTGTGCAGTGTGCATTAGTGTGGAGAGTTGTTCGTGTTAT
TCTCTGCAATGTTAGTGTTGATGTTTCTTTTGATAGTCTGTGATACATGCTAGGGATGAT
CTTAGCTTGGCTGCCAAGAGAGGAGTCTGCTGATCCTCGCATTGCAATTAAGAGAGCAGT
GCGCTGCAGAAGGTGCAAGGGTTATGGGCTTATGGCCACCACAAGGCAATCTGCAATGTT
CCGATCAGCACATAGTATTTAATCATTGGATCAGTTCCGCAATGTATATTAAGGTGGAGA
GTTGTTCGTGTTAATTCTCCAAAATGCTAGTTCTGATGTTTCTTCGGATAGTCTGTTATA
CATGCAAGGGTTGATCTTAGCTCTAAATTGATCTGTATTTTCACCATTGCTTAGACTAAC
TGTATTCAGCTTGTGAGTAAAACGCCGTAGCTTATACTCATGTTGCTATCCACTTTACTC
ACTTTCT