Plant GARDEN
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TOP > About the Species(Zea mays ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d046533_T010
CDS Infomation

cds chromosome:B73_RefGen_v4:9:94356633:94362722:1 gene:Zm00001d046533 gene_biotype:protein_coding transcript_biotype:protein_coding description:nucleoporin-related
Sequence

ATGTTGGGGTCGCGCCGGTGGCAGTCTCCGGCTGATGCTCCTGCGGCCACCGATGACTTG
GAGGACACTGGTGGCGTCGGCGGCCCGTCCAGGCGGCCTCTGCGCCACGGGCTGCACCGC
GCGTCGCCCTACGGTGGTGCCCCCCGCCGGTGGCTCTCCAAGCTCCCCGTGACTTCGAGG
ATATTCCCCACCATGCCACGCGACCGCGCGGCCTCAGGCAGTAATCAAGAGGTTCATTGT
GAACCACTAGAAGTTATTCGTGAAAGACACTCCACAGAACCAAACATCAATGCTGCAGCT
ATTCTACCATCAAGACCTGTGAGCAATACATTTAACCTGCTTCTGGAAGGTGACATGAAT
CCAAGTCATGGCAATGGGCTTGCTGAAATAGAGAACATAATCAACCAGAGATATTTTTCT
AGGGATGAGACACTACGTCTTATAGAGATCATGCGGTCAAGGACTTCTGATTTTACTGTT
GAAGACCAGAGACCTCCAGTATCTACTGCAAAAGGTTTTGAAACAAAATTTTTTACACCT
GCCAAACTGATCGAGGCTCAGCCATCTTGGAGGACTGATATCGTTCCATCATCCAATGTG
CATGATATTGGTTCTTCGCCAGTTGAAATTGCCAAAGCTTTTATGGAAGCGCAGACCTCA
GCTTCTGTACACGAGTCCAAAAAGCGGAAATTCAGAGCTTTGAGTCATGGAGTTGCGGTT
GACAATTCGACATCAGAAGTTTTCCCTACAATAACTACTGATTCTTCTGTAAGATGGCCT
GACTCAGTTGTTCAAGGTGGTCCCAATTATCTTACACCACAAAGTAATAAAGGAAGGACT
CTGTCTCAGCCTCTTTCTCGCACACCATACAATAGCTCAGTTATTCGAAGATATATTAAG
AACAGCAGGCATGGTGATATGCACAATAATGGACAGACACAATTTCCCACTCCATTTTCT
ATTGGAAGTAAGGTACTAGCTAGTTGCCTGTCCATTGCAACAGATTTTCATTATGAACTA
CTCAAAATTCTGCTAATCATTTATCCACAAAGAAACCACGTAGGTACAAGGTGGAACTGG
AAGACCATCTGGTACATTATTTGTACATCTATGTATACACAAAGCAGTGCATGTTAG

Peptide Sequence

PEP ID

Zm00001d046533_P010
PEP Infomation

pep chromosome:B73_RefGen_v4:9:94356633:94362722:1 gene:Zm00001d046533 transcript:Zm00001d046533_T010 gene_biotype:protein_coding transcript_biotype:protein_coding description:nucleoporin-related
Sequence

MLGSRRWQSPADAPAATDDLEDTGGVGGPSRRPLRHGLHRASPYGGAPRRWLSKLPVTSR
IFPTMPRDRAASGSNQEVHCEPLEVIRERHSTEPNINAAAILPSRPVSNTFNLLLEGDMN
PSHGNGLAEIENIINQRYFSRDETLRLIEIMRSRTSDFTVEDQRPPVSTAKGFETKFFTP
AKLIEAQPSWRTDIVPSSNVHDIGSSPVEIAKAFMEAQTSASVHESKKRKFRALSHGVAV
DNSTSEVFPTITTDSSVRWPDSVVQGGPNYLTPQSNKGRTLSQPLSRTPYNSSVIRRYIK
NSRHGDMHNNGQTQFPTPFSIGSKVLASCLSIATDFHYELLKILLIIYPQRNHVGTRWNW
KTIWYIICTSMYTQSSAC

Transcript Sequence

Transcript ID

Zm00001d046533_T010
Transcript Infomation

cdna chromosome:B73_RefGen_v4:9:94356633:94362722:1 gene:Zm00001d046533 gene_biotype:protein_coding transcript_biotype:protein_coding description:nucleoporin-related
Sequence

GTGCGGGGAGCGCAATACGCCGGGCCGCCGGCTAAGCGGGAGGCAAAGGCGAGGATGTTG
GGGTCGCGCCGGTGGCAGTCTCCGGCTGATGCTCCTGCGGCCACCGATGACTTGGAGGAC
ACTGGTGGCGTCGGCGGCCCGTCCAGGCGGCCTCTGCGCCACGGGCTGCACCGCGCGTCG
CCCTACGGTGGTGCCCCCCGCCGGTGGCTCTCCAAGCTCCCCGTGACTTCGAGGATATTC
CCCACCATGCCACGCGACCGCGCGGCCTCAGGCAGTAATCAAGAGGTTCATTGTGAACCA
CTAGAAGTTATTCGTGAAAGACACTCCACAGAACCAAACATCAATGCTGCAGCTATTCTA
CCATCAAGACCTGTGAGCAATACATTTAACCTGCTTCTGGAAGGTGACATGAATCCAAGT
CATGGCAATGGGCTTGCTGAAATAGAGAACATAATCAACCAGAGATATTTTTCTAGGGAT
GAGACACTACGTCTTATAGAGATCATGCGGTCAAGGACTTCTGATTTTACTGTTGAAGAC
CAGAGACCTCCAGTATCTACTGCAAAAGGTTTTGAAACAAAATTTTTTACACCTGCCAAA
CTGATCGAGGCTCAGCCATCTTGGAGGACTGATATCGTTCCATCATCCAATGTGCATGAT
ATTGGTTCTTCGCCAGTTGAAATTGCCAAAGCTTTTATGGAAGCGCAGACCTCAGCTTCT
GTACACGAGTCCAAAAAGCGGAAATTCAGAGCTTTGAGTCATGGAGTTGCGGTTGACAAT
TCGACATCAGAAGTTTTCCCTACAATAACTACTGATTCTTCTGTAAGATGGCCTGACTCA
GTTGTTCAAGGTGGTCCCAATTATCTTACACCACAAAGTAATAAAGGAAGGACTCTGTCT
CAGCCTCTTTCTCGCACACCATACAATAGCTCAGTTATTCGAAGATATATTAAGAACAGC
AGGCATGGTGATATGCACAATAATGGACAGACACAATTTCCCACTCCATTTTCTATTGGA
AGTAAGGTACTAGCTAGTTGCCTGTCCATTGCAACAGATTTTCATTATGAACTACTCAAA
ATTCTGCTAATCATTTATCCACAAAGAAACCACGTAGGTACAAGGTGGAACTGGAAGACC
ATCTGGTACATTATTTGTACATCTATGTATACACAAAGCAGTGCATGTTAGATCCTTGTG
TAGAAACCAATCACCTCTACCAACTGTTGTTTTTTAATAGAAGTAAAGACAAATTTGATG
TATTTTACTGTCGTCATGATACACACATGTCTCTTTGCTTCATGAAAAATAAGAAACTCT
GGACAGATTTAAGCCCACATATTTGCATTATATGTTGGAACTATTTGTGCAAGTTCGTAA
TAGCTAATCAAAATTTATTCTGCCTTGTATGTGATTCAGTGATATTGTTCTCCATTCGGA
AGGTTGTAAAACCTGATTATGTTCGACTATAAGTAATTCCTGCAATTAGTGCACAGCATC
CCAAAAACTTCGAATAATGACCGACAACAGAAATCAGTTATAACTTCGTTTGCTATGTTT
AGACCTTAAAGTGCCATCACATTTGGAGGGGGGGGGGGGATTATTGTACAGATGTACGGC
CATCTGTTCCTTTTTGTCTAATAATATTCTTCTTTGCTTTATAGAGAATACTAGAGGATA
CACATGTATCAGCAAGTGGTGGTATAGCGCAGCCATCATCTTCCAGGGGACAGATAGATG
TTTTTGGTTCTATTCTAAGAGAAGGTTCGACTGCAATAAACAATGTTGCATTCAACCTGC
AAGAGTCAGATGGTAAAAGCATGACAGAAAGCAGAACAACTTTTGGACGTGCTTCAGGTG
TAGACAATATCTCAAGGGTTGCTTCAGTATCTGTTCATCCCAAGTCAAGCGAAACAGCAT
TCAAAATACTTAAGCAACTTGACAGAACTATTCCTTCCCCTACATCAAAGCCACTAGGGC
TGAGACAGACATTAGCCAAGAAAAATACTTTTTCTGTTGCTACCTACAGACAGATTAAAG
AGCCTGATATCATTATCGGTAATGATAATAAACAGAGCAGCATTAATGAGAGTGGTAGTG
CTAGCTCGGAGACTACATATGGAAAAAAGGTTCAGCAACCTCAAAGCAGTCCTATTTCAG
GAGAGTCAAGTGAAAAAGTCCAGAGAAGCGGAGCTAACTCAGATGTTTATGAAGCAGGCA
CTTCTCAGCGTCCTCTGAAATCAAATCTAACACCCACTTCAGTCGCCGAGGTCTTGGATA
ATAACAACACCAGCAAAGGTTTCAGCTTCACATTTCCTATTCCTAAAGCTCCAAGCTCTC
TACTTGAACCGCCTCCTACACCAACCATGGCCTCGCCACCAAGGACCTTGCCAATCACTA
ACGAGGATGTTCCCAAGTTCACCTTTGGCTCATCCAGCATGGCCAACAAACTCGTTTTCT
CCTTCAACTCCACAAGCAGTTCTCCTGGTGCTGGTGGAACAGACCCAACCTTCAAATTTG
GATCTGATAATAAGCGAGAGCTTGTGTTTTGATACAGTTTTTTTTTGATAGACACCATGC
CCGCGGATCTGAACTGTACCACTCTATCTATTCTTGGTGTAAGACGTCTTAAGAGAGTTG
GAGTGTGCTACTTGAGCTAC