Gene sequences

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SNP Detection
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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d046506_T002
CDS Infomation	cds chromosome:B73_RefGen_v4:9:92956668:92968289:1 gene:Zm00001d046506 gene_biotype:protein_coding transcript_biotype:protein_coding description:Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform
Sequence	ATGGCTATGATTGATGAACCTCTCTACCCGATTGCTGTACTGATTGATGAACTGAAAAAT GAAGATATTCAGTTGCGCCTTAACTCCATCAAAAAGCTTTCTACAATTGCCCGGGCATTG GGTGAAGAAAGAACAAGGAAAGAGCTGATTCCATTCCTTAGTGAAAACAACGATGATGAA GATGAGGTGCTTCTTGCAATGGCAGAAGAGTTGGGCGTTTTTATTCCTTATGTTGGAGGA GTAGAGCATGCACATGTTTTGCTTCCACCACTGGAAACATTGTGTACTGTGGAGGAGACC TGCGTCAGAGACAAGGCTGTGGAATCACTTTGTCAGATAGGAGCACAGATGAAGGAAAAT GATATTGTGGACTGGTTTGCCCATGTCGTAAAGAGGTTGGCGGTAGGTGAGTGGTTTACA GCTCGAGTTTCTTCATGTGGCCTTTTTCATATCGCCTATCCTAGTGCACCTGAACAACTG AAGGCAGAACTGAGGACAATTTATGGCCAGTTATGTCAAGACGACATGCCTATGGTACGG AGAGCTGCTGCATCCAATCTTGGGAAGTTCGCTGCAACAGTGGAACAAAGTCATTTGAAG ACAGAAATCATGTCAATGTTTGATGATCTAACTCAAGATGACCAAGATTCAGTGCGACTA TTGGCAGTTGAGGGTTGTGCTGCTCTTGGGAAGTTGTTGGAGCCCCAAGATTGTGCAGCA CATATTCTCCCAGTTATTGTAAATTTCTCTCAGGATAAATCTTGGCGTGTGCGCTATATG GTGGCAAATCAACTGTATGAACTATGTGAAGCTGTTGGTACTGAACCCACAAGGGGTGAT CTGGTGTCAGCGTATGTTCGCCTTCTCTGTGACAATGAGGCTGAAGTGCGGATTGCAGCT GCTGGAAAAGTTACAAAATTCTGCAAAATATTAAACCCACAAATTGCAATTGAACATATT CTTCCGTGTATCAAGGAATTATCATCAGATTCATCTCAGCATGTTCGTTCAGCTTTGGCA TCGGTTATTATGGGAATGGCTCCTGTATTGGGAAAGGACGCCACTCTTGAACAACTGCTT CCCATTTTTCTTTCTTTGCTGAAGGATGAGTTCCCTGATGTTCGACTCAACATTATAAGC AAACTTGATCAAGTTAACCAGGTTATTGGAATTGACTTGTTGTCGCAATCACTTCTGCCA GCCATTGTAGAGCTCTCTGAAGATAGGCACTGGAGAGTTCGGCTTGCCATAATTGAGTAC ATACCTTTGTTGGCCAGCCAGTTAGGTGTTGGTTTTTTTGATGACAAGTTAGGGGCACTT TGCATGCAGTGGTTGGAAGATAAGGTTTTCTCGATCAGAGATGCTGGTGCCAATAATTTA AAGCGTTTGACAGAGGAATTTGGCCCTGAGTGGGCGATGCAACATATAATTCCTCAGGTT AGCTTTAGTACTGTGAAAAATGTTTTGGAGAAGATAAACAACCCACATTATCTGTATCGG ATGACCACTTTGCAAGCTATTTCTTTGCTAGCTCCTGTCATGGGTCCTGATATCACATGC CAACAGTTGCTCCCTGTCGTCATTGCTTCTTCAAAGGACAGGGTTCCGAACATGAAATTC AATGTTGCTAAAGTCCTGCAATCACTTGTACCAATCCTTGACCAATCTGTTGTGGAGAAG ACAGTGAAACCATGCCTAGTTGAGCTCAGTGAGGACCCAGATGTAGATGTAAGATACTAC GCACACCAAGCCCTTCGGGCGTGTGACCAAATGGTGATATCTAGTTGA

Peptide Sequence

PEP ID	Zm00001d046506_P002
PEP Infomation	pep chromosome:B73_RefGen_v4:9:92956668:92968289:1 gene:Zm00001d046506 transcript:Zm00001d046506_T002 gene_biotype:protein_coding transcript_biotype:protein_coding description:Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform
Sequence	MAMIDEPLYPIAVLIDELKNEDIQLRLNSIKKLSTIARALGEERTRKELIPFLSENNDDE DEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCQIGAQMKEN DIVDWFAHVVKRLAVGEWFTARVSSCGLFHIAYPSAPEQLKAELRTIYGQLCQDDMPMVR RAAASNLGKFAATVEQSHLKTEIMSMFDDLTQDDQDSVRLLAVEGCAALGKLLEPQDCAA HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGTEPTRGDLVSAYVRLLCDNEAEVRIAA AGKVTKFCKILNPQIAIEHILPCIKELSSDSSQHVRSALASVIMGMAPVLGKDATLEQLL PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELSEDRHWRVRLAIIEY IPLLASQLGVGFFDDKLGALCMQWLEDKVFSIRDAGANNLKRLTEEFGPEWAMQHIIPQV SFSTVKNVLEKINNPHYLYRMTTLQAISLLAPVMGPDITCQQLLPVVIASSKDRVPNMKF NVAKVLQSLVPILDQSVVEKTVKPCLVELSEDPDVDVRYYAHQALRACDQMVISS

Transcript Sequence

Transcript ID	Zm00001d046506_T002
Transcript Infomation	cdna chromosome:B73_RefGen_v4:9:92956668:92968289:1 gene:Zm00001d046506 gene_biotype:protein_coding transcript_biotype:protein_coding description:Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform
Sequence	AAACAAATAAAAAGGAGAGTGAAAGAAAAAGAACAAAAAAAGGGAATAGCCAAATGCGGC TCAGGAGAAGGCCCCGTGTGGCCGTGTGAGCTTCCCCCGGCCCGAACGGCAGTCCCCCGC ATTCCCCTAACGTTCAATCGCGTACCGTCGCTCGCCGTATTCCCCTGCCGCGCACAGTTC ACTCGCGCACCTCTCGCCCCCTCGCTCTACGACGACTAGTGGGCCGCCGGCGCTGGCGCC GCCTTACGCCAGGTGCCGAGGTCTTCGTTGATCTCTTCGCCGGCGACGAGCACCCACCAG CTGGGAAAAAATCTATAGCCAAACATAATAATGGCTATGATTGATGAACCTCTCTACCCG ATTGCTGTACTGATTGATGAACTGAAAAATGAAGATATTCAGTTGCGCCTTAACTCCATC AAAAAGCTTTCTACAATTGCCCGGGCATTGGGTGAAGAAAGAACAAGGAAAGAGCTGATT CCATTCCTTAGTGAAAACAACGATGATGAAGATGAGGTGCTTCTTGCAATGGCAGAAGAG TTGGGCGTTTTTATTCCTTATGTTGGAGGAGTAGAGCATGCACATGTTTTGCTTCCACCA CTGGAAACATTGTGTACTGTGGAGGAGACCTGCGTCAGAGACAAGGCTGTGGAATCACTT TGTCAGATAGGAGCACAGATGAAGGAAAATGATATTGTGGACTGGTTTGCCCATGTCGTA AAGAGGTTGGCGGTAGGTGAGTGGTTTACAGCTCGAGTTTCTTCATGTGGCCTTTTTCAT ATCGCCTATCCTAGTGCACCTGAACAACTGAAGGCAGAACTGAGGACAATTTATGGCCAG TTATGTCAAGACGACATGCCTATGGTACGGAGAGCTGCTGCATCCAATCTTGGGAAGTTC GCTGCAACAGTGGAACAAAGTCATTTGAAGACAGAAATCATGTCAATGTTTGATGATCTA ACTCAAGATGACCAAGATTCAGTGCGACTATTGGCAGTTGAGGGTTGTGCTGCTCTTGGG AAGTTGTTGGAGCCCCAAGATTGTGCAGCACATATTCTCCCAGTTATTGTAAATTTCTCT CAGGATAAATCTTGGCGTGTGCGCTATATGGTGGCAAATCAACTGTATGAACTATGTGAA GCTGTTGGTACTGAACCCACAAGGGGTGATCTGGTGTCAGCGTATGTTCGCCTTCTCTGT GACAATGAGGCTGAAGTGCGGATTGCAGCTGCTGGAAAAGTTACAAAATTCTGCAAAATA TTAAACCCACAAATTGCAATTGAACATATTCTTCCGTGTATCAAGGAATTATCATCAGAT TCATCTCAGCATGTTCGTTCAGCTTTGGCATCGGTTATTATGGGAATGGCTCCTGTATTG GGAAAGGACGCCACTCTTGAACAACTGCTTCCCATTTTTCTTTCTTTGCTGAAGGATGAG TTCCCTGATGTTCGACTCAACATTATAAGCAAACTTGATCAAGTTAACCAGGTTATTGGA ATTGACTTGTTGTCGCAATCACTTCTGCCAGCCATTGTAGAGCTCTCTGAAGATAGGCAC TGGAGAGTTCGGCTTGCCATAATTGAGTACATACCTTTGTTGGCCAGCCAGTTAGGTGTT GGTTTTTTTGATGACAAGTTAGGGGCACTTTGCATGCAGTGGTTGGAAGATAAGGTTTTC TCGATCAGAGATGCTGGTGCCAATAATTTAAAGCGTTTGACAGAGGAATTTGGCCCTGAG TGGGCGATGCAACATATAATTCCTCAGGTTAGCTTTAGTACTGTGAAAAATGTTTTGGAG AAGATAAACAACCCACATTATCTGTATCGGATGACCACTTTGCAAGCTATTTCTTTGCTA GCTCCTGTCATGGGTCCTGATATCACATGCCAACAGTTGCTCCCTGTCGTCATTGCTTCT TCAAAGGACAGGGTTCCGAACATGAAATTCAATGTTGCTAAAGTCCTGCAATCACTTGTA CCAATCCTTGACCAATCTGTTGTGGAGAAGACAGTGAAACCATGCCTAGTTGAGCTCAGT GAGGACCCAGATGTAGATGTAAGATACTACGCACACCAAGCCCTTCGGGCGTGTGACCAA ATGGTGATATCTAGTTGACTAGCCTGTCCAGGAATTAGCAAATGAGATACATATTGGTCT ATTCTTTTTGAACATTTTAAAGTGTTATGTAGTCTTAAAAATTATTGTACCACCAATGAA GTTGATGCATCTTTTTATTAATTATGTGTTTTTTGATTTAGGTTTAGTTTAGTTTTTGGA TTTAATCAACCATGGGAAGTAGGTGCACACATGATATTTGTGTGATTGACCTGTGCATGT CTTGTGCTGTTGGTAGGTCACTAGTGTAAGCACATTATTTTATAGTCTGCTTTGCTTAGC GTTGTGCGCGGAAACTGTATGCGTTGCTTGTTCAGACATGAAGTTTGCGCAGAAATTGTG TACTCTCTCGTCCCTCCAATTTTGAGGTAATTGGAGAGGGATAACTGGAGAAAACACTGA GATAGTCCTGTCTCAACCCTTGACTCTGAACTAAACAACTTTATTTGAGTG