Plant GARDEN
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TOP > About the Species(Zea mays ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d046476_T009
CDS Infomation

cds chromosome:B73_RefGen_v4:9:91656878:91661492:1 gene:Zm00001d046476 gene_biotype:protein_coding transcript_biotype:protein_coding description:CAI-1 autoinducer sensor kinase/phosphatase cqsS isoform 1
Sequence

ATGAGAGTTGGTGCAAATCCGAGTTTAGAATGGAGCCAACAATATTCAAAACCATATCAA
ATTTTCTTAGAAGAGACAATTTACTGCGAGACACACAAGCAACTTGGGATGTTCATGTAC
ATGATCTCCCACAATGCTAGTAACCAAATGCTGCAGAAGGCTTTTCAACATAGTGGAGAG
ACTATCCATAGAAAAATATCTGAAGTATTTGATCTTGTTCCCACACTAACTCAGTGTTTT
GTGAAGCTTCCTAGCTCTGTCCACACTCATACAAAAATCGCAACAGATTCTAGGTTCATG
CCATTTTTTCAGAACTGCATTGGTGCAATCGACGGTACACATATACCCATCACCATAGCA
GAACATAGGGCCCCTCCATATAGAAACAGGAAAGGAACTCTTTCACACAATGTTATGGTA
GCCTGGGACTTCGACCTCAATTTCACATTTGTTTCATGTGGATGGGAGGGGTCAGCCTCA
GATGCAGGGGTGCCTCGATCTGCTATTAGCAAAGGATTTAGTGTGCCAGAAGGAAAGTTT
TATCTAGTAGATGGTGGTTATGCAAATACGTCATCCTTCATTGCACCGTATAGAGGGGTT
CGATACCATCTCAACGAGTTTAGGAGGCGTCGTTCATCACAAAGTGGTTATGCGAACTAC
AGAGAGTTGTTCAACCACCGCCATGCAATTCTCCGTAACCATATAGAGAGGGCCATCGGT
GTTCTAAAGAAAAGGTTCCCGATTCTAAAAGTAGGCACATTTCATCCCATAGAGAACCAA
ATCAAGATCACAGCTGCAACTGTTGCATTTCACAACATAATTAGAGGGCAAAATGGAGAC
GAAAGATGGCTTGACAACCAACCAAATTACATCTCTCCAAGTCAATATGTTGATGTTCCA
GAGGGAGATACCAACTATCTCAATGACACAGAATCAAGTGATGGAAGCGCTCTAAGAGAT
CAGATCGCTCTTCAGATGTGGGCTTCCTACAATATATAG

Peptide Sequence

PEP ID

Zm00001d046476_P009
PEP Infomation

pep chromosome:B73_RefGen_v4:9:91656878:91661492:1 gene:Zm00001d046476 transcript:Zm00001d046476_T009 gene_biotype:protein_coding transcript_biotype:protein_coding description:CAI-1 autoinducer sensor kinase/phosphatase cqsS isoform 1
Sequence

MRVGANPSLEWSQQYSKPYQIFLEETIYCETHKQLGMFMYMISHNASNQMLQKAFQHSGE
TIHRKISEVFDLVPTLTQCFVKLPSSVHTHTKIATDSRFMPFFQNCIGAIDGTHIPITIA
EHRAPPYRNRKGTLSHNVMVAWDFDLNFTFVSCGWEGSASDAGVPRSAISKGFSVPEGKF
YLVDGGYANTSSFIAPYRGVRYHLNEFRRRRSSQSGYANYRELFNHRHAILRNHIERAIG
VLKKRFPILKVGTFHPIENQIKITAATVAFHNIIRGQNGDERWLDNQPNYISPSQYVDVP
EGDTNYLNDTESSDGSALRDQIALQMWASYNI

Transcript Sequence

Transcript ID

Zm00001d046476_T009
Transcript Infomation

cdna chromosome:B73_RefGen_v4:9:91656878:91661492:1 gene:Zm00001d046476 gene_biotype:protein_coding transcript_biotype:protein_coding description:CAI-1 autoinducer sensor kinase/phosphatase cqsS isoform 1
Sequence

CCGCCGCCTCGTCTCGTCTTTGCTATGCGCCACGAGCGCCTCCGCCGCTCCAACGCTCCA
ACGCCCTGAGCGCCTCCAACACCACTCCAACGCCACGAGCGCCTCCGCCGCTCCACCGAA
CAACTCCAACGCCACTCCAGCTCTTGCAGCAGTAGAACTCTACTGCAGCCAGCTACGACA
CCCTGCGCTTGCCGCACTAGGGCATCGACGCCGTGCTCTTCGTGCCGGATGACGCCAAGG
CCACGCAGACCGCCGACCCGAACAGGAAGCCTCCCGCCATTGTCACCCACAAGAAGAAGA
TCAAGCTCCGGTGAGATATGGGTTCTTGGGAGAAGCAAGTTAGACAATTTTTGTTAGATG
AGGAAGAAGACGATGATGAGTTGTTCTTTGTTATTCTCCCTGCTATAATTCCATACCTCT
CAGAAGAGAAAGAGCCCATCCACACCTCCTCACTCACTGGCGCTAAAAAGGTTAGAGAAA
TTCTTAAAGGACATGAGAGTTGGTGCAAATCCGAGTTTAGAATGGAGCCAACAATATTCA
AAACCATATCAAATTTTCTTAGAAGAGACAATTTACTGCGAGACACACAAGCAACTTGGG
ATGTTCATGTACATGATCTCCCACAATGCTAGTAACCAAATGCTGCAGAAGGCTTTTCAA
CATAGTGGAGAGACTATCCATAGAAAAATATCTGAAGTATTTGATCTTGTTCCCACACTA
ACTCAGTGTTTTGTGAAGCTTCCTAGCTCTGTCCACACTCATACAAAAATCGCAACAGAT
TCTAGGTTCATGCCATTTTTTCAGAACTGCATTGGTGCAATCGACGGTACACATATACCC
ATCACCATAGCAGAACATAGGGCCCCTCCATATAGAAACAGGAAAGGAACTCTTTCACAC
AATGTTATGGTAGCCTGGGACTTCGACCTCAATTTCACATTTGTTTCATGTGGATGGGAG
GGGTCAGCCTCAGATGCAGGGGTGCCTCGATCTGCTATTAGCAAAGGATTTAGTGTGCCA
GAAGGAAAGTTTTATCTAGTAGATGGTGGTTATGCAAATACGTCATCCTTCATTGCACCG
TATAGAGGGGTTCGATACCATCTCAACGAGTTTAGGAGGCGTCGTTCATCACAAAGTGGT
TATGCGAACTACAGAGAGTTGTTCAACCACCGCCATGCAATTCTCCGTAACCATATAGAG
AGGGCCATCGGTGTTCTAAAGAAAAGGTTCCCGATTCTAAAAGTAGGCACATTTCATCCC
ATAGAGAACCAAATCAAGATCACAGCTGCAACTGTTGCATTTCACAACATAATTAGAGGG
CAAAATGGAGACGAAAGATGGCTTGACAACCAACCAAATTACATCTCTCCAAGTCAATAT
GTTGATGTTCCAGAGGGAGATACCAACTATCTCAATGACACAGAATCAAGTGATGGAAGC
GCTCTAAGAGATCAGATCGCTCTTCAGATGTGGGCTTCCTACAATATATAGATTTTTGAA
TAAAGGATGATTTGGAACAATGTGTACGAGAAAGGCTTAGTCGATGTGATGCATGATCAC
AAAGATAATCCAAAATTCAAAGGTCAAAATGGTTGGAATCGTGATGGATGGAATAGTATC
ACTACCAAGTTCAATGAAAAGTTCCCTCTAGCTCATTTCTCTAAACAACAACTGCAAGAG
AAGGAGAGAGAGCTTAAAGGATACTACAAGGCAATAAGGGATTCAAGAAAAGAAAGCGGG
GTTGGTTGGAATGACACCCTATGCATGGTACTAGCTGAACCAGAAGTTTGGCCAAGGCTG
ATTCGCGTATCAAAGTTTCGCAATAGGCCATTCCCTCTTTTTTACAGTTTAGAAGGGCTA
TATGAAGGTAGTGTGGCTACCGGAGAGTTGAATTTCACATCAACCGCTGTTGATCTTCCT
CCACCTTCAGCTCCATCCAGGAGTGTGTCTGGACAAAGTCTCAGTCCTTTGAGTACTAAT
TCACTTGATTTGGATGGACAAGAAACCACAAGTGTGTTCAATCTATCTTGTGATGCTCAA
TCTGTCCGAGTCAATACTAATGAACCCACTGAAGCTCAATTTGTCCCATCTAATCAAGAA
TCAAGCCAGAGAGAAGGTGGCAGTGGGAGAAAGCGTAAGCAAAGCCATGTTGGATTAGCT
CTTGAAAGTTATGTGGAGTTTAAAAAGATCCAAAATACAGAAACACTTGAAACTCTTAAA
GAACATAAGAGGCAAGAGGATCAATTTTCTATTAGCAAGTGTCAGGCTGAATTGAAAGGA
ATGGATGGATTAACAGCAGTAGACAAATCATATGCTTTGGAGCTTTTCGTATCTGTGACA
AACCGAGAAATTTTCTTAACAACAACAGAGCATGATGTTAGAGAAATTTGGCTCAAGCGC
AAAATTAGGTTGCTTCGTGGTAGTGATGCATGGCCTGAACAAATGATATGAGCAAATTTG
ACAACTGCAGTTCTGTTATGGTGAATGGTGATTGTAGTTCAGTTTCAGCTCTAACCTATG
GAAAATTGAATGGCAGTTGCACTAATCTGTTGGTGGAATGATTTTCCCAGTAATTTCCTG
GACAAGCAGATCACTGAGAACCATTTACCTTATGAGAAATGATGCCCTGTATGGTTCAGT
ATAGTTCTTGTATTGCTAGTTTAAATTAATTCTTGTATGGCAGTTGCACTAAACTGAATG
GCAGCTGAACTTTGAGATATGCTTCTATTGTTGGTTTAAAACCATGGTGATGACTGTTCT
TGTATGCATTCTGTATGCATTCTTG