Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d046444_T003
CDS Infomation

cds chromosome:B73_RefGen_v4:9:90216766:90219166:1 gene:Zm00001d046444 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:fatty acid elongase2 description: fatty acid elongase2
Sequence

ATGGAGACGTCAGCGCCGCCCAATGCCCCCGCTCCGCCGGCGCAGCCACGGAGGCGGTTG
CCGGACTTCCAGCAGTCAGTGCGGCTCAAGTATGTGAAGCTGGGGTACCACTACCTCATA
TCCCACGGGATGTACCTGCTGCTGTCGCCGCTGATGGCGCTCGTCGCCGTGCAGCTCTCC
ACCGTCTCCCCGCATGACCTCGCCGACCTGTGGGAGCAGCTCCGCTTCAACCTCCTCTCC
GTCGTCGCCTGCTCCACGCTGCTCGTCTTCCTCTCCACCGTTTACTTCCTCACCCGCCCG
CGCCCCGTGTACCTGCTCGACTTCGCCTGCTACAAGCCGGAGTCGGAGCGCAAGTGCACG
CGCGAGACCTTCATGCACTGCTCCAAGCTCACCGGATCCTTCACGGACGAGAACCTCGAG
TTCCAGCGCAAGATCCTCGAGCGCTCCGGCCTCGGCGAGGACACGTACCTTCCCCCCGCC
GTGCTCCGGGTGCCCCCTAACCCGTGCATGGACGAGGCGCGTAAGGAGGCGCGCGCCGTC
ATGTTCGGCGCCATCGACCAGCTGCTCGAGAAGACCGGTGTCAGGCCCAAGGACATTGGT
GTCCTAGTGGTCAACTGCAGCCTGTTCAACCCGACGCCGTCGCTGTCAGCCATGGTGGTG
AACCATTACAAGCTGAGGGGGAATATTGTGAGCTACAACCTCGGCGGGATGGGCTGCAGC
GCCGGGCTTCTGTCCATCGACCTCGCCAAGGATCTGCTGCAGGTGCACCCCAACTCTTAC
GCCCTGGTGATCAGCATGGAGAACATCACACTGAATTGGTACTTTGGGAACAACCGGTCC
ATGCTTGTGTCGAATTGCCTGTTCCGGATGGGTGGCGCGGCCATCCTGCTCTCGAACAGG
CGGTCTGACAGGCGGAGGTCCAAGTATGAGCTGGTGCACACGGTGCGCACGCACAAGGGC
GCCAACGACAAGTGCTTCGGCTGCGTGACACAGGAGGAAGATGAGATTGGCAAGATTGGC
GTGTCACTGTCCAAGGACCTCATGGCAGTGGCCGGAGACGCACTTAAGACCAACATCACC
ACGCTGGGGCCGTTGGTGCTCCCATTATCAGAGCAACTTCTCTTCATGGGCACATTGATT
GCCAAGAAGGTGCTCAAGATGAAAATCAAGCCATACATCCCTGACTTCAAGCTGGCTTTC
GAGCACTTCTGCATCCACGCAGGCGGCCGCGCTGTGCTGGATGAGCTGGAGAAGAACCTG
GAGCTCACTGACTGGCACATGGAGCCATCGAGGATGACCCTGTACAGGTTTGGCAACACA
TCAAGCAGCTCACTCTGGTACGAGCTGGCGTACACTGAGGCAAAGGGTAGGATCAGGAAG
CGCGACAGGATCTGGCAGATCGCATTTGGTTCTGGATTCAAGTGCAACAGCGCCGTCTGG
AAGGCACTCCGGACGGTGAACCCGGCCAAGGAGAAGAGCCCCTGGATGGATGAGATTGAC
AACTTCCCGGTGGATGTTCCAAAGATTTCAAAGGTTGGTGGCGCTTGA

Peptide Sequence

PEP ID

Zm00001d046444_P003
PEP Infomation

pep chromosome:B73_RefGen_v4:9:90216766:90219166:1 gene:Zm00001d046444 transcript:Zm00001d046444_T003 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:fatty acid elongase2 description: fatty acid elongase2
Sequence

METSAPPNAPAPPAQPRRRLPDFQQSVRLKYVKLGYHYLISHGMYLLLSPLMALVAVQLS
TVSPHDLADLWEQLRFNLLSVVACSTLLVFLSTVYFLTRPRPVYLLDFACYKPESERKCT
RETFMHCSKLTGSFTDENLEFQRKILERSGLGEDTYLPPAVLRVPPNPCMDEARKEARAV
MFGAIDQLLEKTGVRPKDIGVLVVNCSLFNPTPSLSAMVVNHYKLRGNIVSYNLGGMGCS
AGLLSIDLAKDLLQVHPNSYALVISMENITLNWYFGNNRSMLVSNCLFRMGGAAILLSNR
RSDRRRSKYELVHTVRTHKGANDKCFGCVTQEEDEIGKIGVSLSKDLMAVAGDALKTNIT
TLGPLVLPLSEQLLFMGTLIAKKVLKMKIKPYIPDFKLAFEHFCIHAGGRAVLDELEKNL
ELTDWHMEPSRMTLYRFGNTSSSSLWYELAYTEAKGRIRKRDRIWQIAFGSGFKCNSAVW
KALRTVNPAKEKSPWMDEIDNFPVDVPKISKVGGA

Transcript Sequence

Transcript ID

Zm00001d046444_T003
Transcript Infomation

cdna chromosome:B73_RefGen_v4:9:90216766:90219166:1 gene:Zm00001d046444 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:fatty acid elongase2 description: fatty acid elongase2
Sequence

GCTCGCGGCCGCATTAGCGCGGAGATCGAGAGACAAGAGAGGGAAGGCGGCGGCTTGCCG
GCTTAAGCCTTCTCTCCCTCCGTCGTCGCCTCCTCCTTACGTCCGCTTCTTCCTCCTGAA
TGGAGACGTCAGCGCCGCCCAATGCCCCCGCTCCGCCGGCGCAGCCACGGAGGCGGTTGC
CGGACTTCCAGCAGTCAGTGCGGCTCAAGTATGTGAAGCTGGGGTACCACTACCTCATAT
CCCACGGGATGTACCTGCTGCTGTCGCCGCTGATGGCGCTCGTCGCCGTGCAGCTCTCCA
CCGTCTCCCCGCATGACCTCGCCGACCTGTGGGAGCAGCTCCGCTTCAACCTCCTCTCCG
TCGTCGCCTGCTCCACGCTGCTCGTCTTCCTCTCCACCGTTTACTTCCTCACCCGCCCGC
GCCCCGTGTACCTGCTCGACTTCGCCTGCTACAAGCCGGAGTCGGAGCGCAAGTGCACGC
GCGAGACCTTCATGCACTGCTCCAAGCTCACCGGATCCTTCACGGACGAGAACCTCGAGT
TCCAGCGCAAGATCCTCGAGCGCTCCGGCCTCGGCGAGGACACGTACCTTCCCCCCGCCG
TGCTCCGGGTGCCCCCTAACCCGTGCATGGACGAGGCGCGTAAGGAGGCGCGCGCCGTCA
TGTTCGGCGCCATCGACCAGCTGCTCGAGAAGACCGGTGTCAGGCCCAAGGACATTGGTG
TCCTAGTGGTCAACTGCAGCCTGTTCAACCCGACGCCGTCGCTGTCAGCCATGGTGGTGA
ACCATTACAAGCTGAGGGGGAATATTGTGAGCTACAACCTCGGCGGGATGGGCTGCAGCG
CCGGGCTTCTGTCCATCGACCTCGCCAAGGATCTGCTGCAGGTGCACCCCAACTCTTACG
CCCTGGTGATCAGCATGGAGAACATCACACTGAATTGGTACTTTGGGAACAACCGGTCCA
TGCTTGTGTCGAATTGCCTGTTCCGGATGGGTGGCGCGGCCATCCTGCTCTCGAACAGGC
GGTCTGACAGGCGGAGGTCCAAGTATGAGCTGGTGCACACGGTGCGCACGCACAAGGGCG
CCAACGACAAGTGCTTCGGCTGCGTGACACAGGAGGAAGATGAGATTGGCAAGATTGGCG
TGTCACTGTCCAAGGACCTCATGGCAGTGGCCGGAGACGCACTTAAGACCAACATCACCA
CGCTGGGGCCGTTGGTGCTCCCATTATCAGAGCAACTTCTCTTCATGGGCACATTGATTG
CCAAGAAGGTGCTCAAGATGAAAATCAAGCCATACATCCCTGACTTCAAGCTGGCTTTCG
AGCACTTCTGCATCCACGCAGGCGGCCGCGCTGTGCTGGATGAGCTGGAGAAGAACCTGG
AGCTCACTGACTGGCACATGGAGCCATCGAGGATGACCCTGTACAGGTTTGGCAACACAT
CAAGCAGCTCACTCTGGTACGAGCTGGCGTACACTGAGGCAAAGGGTAGGATCAGGAAGC
GCGACAGGATCTGGCAGATCGCATTTGGTTCTGGATTCAAGTGCAACAGCGCCGTCTGGA
AGGCACTCCGGACGGTGAACCCGGCCAAGGAGAAGAGCCCCTGGATGGATGAGATTGACA
ACTTCCCGGTGGATGTTCCAAAGATTTCAAAGGTTGGTGGCGCTTGAAGAACCATTCTTC
TTATTATTAGGTGGCAAGTGGAGTTGGGTGATTGTCAGGGGCTGGGCAGAGATTTATTCC
ATCGTTTCCACCGTTGGTTCTTGTATTCAGTTGTAGCATGGCATCTGTGAAGGAACTTGA
GTAGATGATTCGGTTAGGTAGAAAGGGTGTGTTCTTCGGCTCGCTAGGGTTGTCTGAATG
CCTGATATGTCCTATTTATTCAGATTGGAGAGAGCAATCGATTTGCATTCTTTGCTGCGT
GATTGAGATGTTCCCATTGCAGGCCAACTTAAACTTGAAATTCCCCTATCCAATTGATTG
GTTCTGTTCTAACATCTTTACCAGTGTTCTGTTGCAACTATAGTTTGTTATCGGGAGGTA
CCAATTGCGTGCTGTGTGATAGTGTGATTGCCCGGAGTGACTTTGAGCTGCTGGTTCTGA
TGTGGATCTGAGCTCGCTTGAGTGATTTAGAAGGAAGAGCCTGTCAATTATGCATTCATA
CTTGTAATCAATATCCAACCTGTAAATTATTGCTTGATAGCAGTTGTAGCCTGTCTGGTT
GTCCTAGCATTATTTTTGAATTAAAATAGAGTTG