Plant GARDEN
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TOP > About the Species(Zea mays ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d046405_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:9:87582999:87584881:-1 gene:Zm00001d046405 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Homeobox-transcription factor 87 description:Putative homeodomain-like transcription factor superfamily protein

Sequence

ATGGCGACGGTGCTGCCGCTTGCCGCCGCCTCGGCCTCGGCCACGCCGAGGACTTGCATC
TCCGGCGGCCCAGTTCCCGCGCGATTCCTCGGGACTTGCATGCGTCTCCGCATCCACATC
CCACCGCGGGGCGTTGCCTGCGCCCTCAGAAGGAGACCCACCAAGTACAAGACTAAAATC
CAGAGTGAGGAGGATGTGGTGGCTGCAGAAGATGTCATGGATGATGATGACGACGAGGAT
GGTGCACTGGAAGCACTTTTCAAGCAGCTGGAAGAAGATCTTGACAATGATGATTTATCT
GTCGATGATAATGATATATCAGAAGAAGATATGGCAAGGTTTGAAAAGGAGTTGGCAGAA
GCAATTGAAGATGTCAGTGGTGTTGATGACTCAGCGGGGGATTCGTTGCTGAGCTCTGGC
GACTATGGTATTGATGAGCAACTAGATGGAAGCGAACGGGCAGAGCTGAAAACCTGGCAA
CTCCGGAGATTGGCTCGTGCACTGAAAATAGGCCGGCGTAAAACTAGTATTAAGAATCTT
GCAGGGGAGCTAGGCCTAGATAGGGGTTTGGTTATTGAAATGCTCCGCAATCCACCACCG
AAGCTTCTACTCATGTCTGATTCTTTGCCTGATGAAGTCCCTTCTAAATCTGAAGTGAAG
GAAATAGAAACCCCTAGTACGACCACTGTTGACGAGGTTGATACCAGTGAAATCAAACCA
CAGTTGGAGCTTCCAGTGCACGTCATGAGTGCAGAATGGTCTGCAAGAAAAAGACTGAAA
AAGGTGCAACTTGAGACCTTAGAAAGAGTCTACCTGCGAAGCAAACGGCCCACGAATACA
ATGGTCAGCAGCATAGTTCAAGTGACAAACCTTCCGCGAAAGACCATTGTTAAGTGGTTT
GAGGATAGAAGGGAGCAAGATGGAGTCCCTGACCATCGTGCTGCATTCAAGAGATCCCTA
TCTGAGATTGGTGCTAGTTCATAA

Peptide Sequence

PEP ID

Zm00001d046405_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:9:87582999:87584881:-1 gene:Zm00001d046405 transcript:Zm00001d046405_T001 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Homeobox-transcription factor 87 description:Putative homeodomain-like transcription factor superfamily protein

Sequence

MATVLPLAAASASATPRTCISGGPVPARFLGTCMRLRIHIPPRGVACALRRRPTKYKTKI
QSEEDVVAAEDVMDDDDDEDGALEALFKQLEEDLDNDDLSVDDNDISEEDMARFEKELAE
AIEDVSGVDDSAGDSLLSSGDYGIDEQLDGSERAELKTWQLRRLARALKIGRRKTSIKNL
AGELGLDRGLVIEMLRNPPPKLLLMSDSLPDEVPSKSEVKEIETPSTTTVDEVDTSEIKP
QLELPVHVMSAEWSARKRLKKVQLETLERVYLRSKRPTNTMVSSIVQVTNLPRKTIVKWF
EDRREQDGVPDHRAAFKRSLSEIGASS

Transcript Sequence

Transcript ID

Zm00001d046405_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:9:87582999:87584881:-1 gene:Zm00001d046405 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Homeobox-transcription factor 87 description:Putative homeodomain-like transcription factor superfamily protein

Sequence

AACAACGCGCACTCGCGCAGAGACACTGCCCATCAGGATTTCGCAAAAGCAACAAAACCC
ACTCGACGTCGAGGGTAGAAGAGGCCTGCAAATTTCCGAAGAGCTCGCGGAAATGGCGAC
GGTGCTGCCGCTTGCCGCCGCCTCGGCCTCGGCCACGCCGAGGACTTGCATCTCCGGCGG
CCCAGTTCCCGCGCGATTCCTCGGGACTTGCATGCGTCTCCGCATCCACATCCCACCGCG
GGGCGTTGCCTGCGCCCTCAGAAGGAGACCCACCAAGTACAAGACTAAAATCCAGAGTGA
GGAGGATGTGGTGGCTGCAGAAGATGTCATGGATGATGATGACGACGAGGATGGTGCACT
GGAAGCACTTTTCAAGCAGCTGGAAGAAGATCTTGACAATGATGATTTATCTGTCGATGA
TAATGATATATCAGAAGAAGATATGGCAAGGTTTGAAAAGGAGTTGGCAGAAGCAATTGA
AGATGTCAGTGGTGTTGATGACTCAGCGGGGGATTCGTTGCTGAGCTCTGGCGACTATGG
TATTGATGAGCAACTAGATGGAAGCGAACGGGCAGAGCTGAAAACCTGGCAACTCCGGAG
ATTGGCTCGTGCACTGAAAATAGGCCGGCGTAAAACTAGTATTAAGAATCTTGCAGGGGA
GCTAGGCCTAGATAGGGGTTTGGTTATTGAAATGCTCCGCAATCCACCACCGAAGCTTCT
ACTCATGTCTGATTCTTTGCCTGATGAAGTCCCTTCTAAATCTGAAGTGAAGGAAATAGA
AACCCCTAGTACGACCACTGTTGACGAGGTTGATACCAGTGAAATCAAACCACAGTTGGA
GCTTCCAGTGCACGTCATGAGTGCAGAATGGTCTGCAAGAAAAAGACTGAAAAAGGTGCA
ACTTGAGACCTTAGAAAGAGTCTACCTGCGAAGCAAACGGCCCACGAATACAATGGTCAG
CAGCATAGTTCAAGTGACAAACCTTCCGCGAAAGACCATTGTTAAGTGGTTTGAGGATAG
AAGGGAGCAAGATGGAGTCCCTGACCATCGTGCTGCATTCAAGAGATCCCTATCTGAGAT
TGGTGCTAGTTCATAACTTCTTCAGATAAGCCTTTGTTACGGTGTTTACTTGGAACCATT
ACAAACATGTAAATTTGAGCTTTGAAATTATGACAAGTTTTGCAAGCTCAACATGCAGTA
TCTTTTAGATTGTAGTCT