Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d046319_T001
CDS Infomation	cds chromosome:B73_RefGen_v4:9:80226391:80227971:1 gene:Zm00001d046319 gene_biotype:protein_coding transcript_biotype:protein_coding description:Putative FAD-binding Berberine family protein
Sequence	ATGGCGACATCAAGGCCCCTTGCCTTGGCGCTCCTCTTCTGCGCCTTGTCAGCCTGCAGC CACGCCGCCATTTCCTACCCACCGTCGGCCATGTCCACGGCGGCACCTGCCAACAATGGC TTTCTCTCGTGCCTCATCAAGAGCGTTCCCCCGCGGCTCCTCCACGGCAAGAGCTCGCGT GCGTACGGCTCCATCTGGGAGTCCACCGTCAGGAACGTCAAGTTCGTGTCGGACAAGACG GTGAAGCCGGTGTACATTATCACCCCCACCGAGGCCGCGCACATCCAGGCCACCGTGGCG TGCGGGCGCAAGCACGGGCTGCGGGTCCGCGTGCGGAGCGGCGGGCACGACTACGAGGGC CTGTCGTACCGGTCCGCCAAGCCGGAGACGTTCGCCGTGGTGGACCTGTCCATGATGCGG CAGGTGCGCATCGACGGCAAGGCCGCCACGGCGTGGGTGGACTCCGGCGCGCAGCTCGGC GAGCTCTACTACGCCGTGGCGAAGATGACCCCCAGCCTCGGGTTCCCGGCGGGCGTGTGC GCCACGATCGGCGTCGGGGGCCACTTCAGCGGGGGCGGCTTCGGCATGCTGCTGCGCAAG TACGGCACCGCCGGGGACAACGTCATCGACGCCAAGGTGGTGGACGCCAACGGCACCCTG CTGGACAGGAAGTCCATGGGCGAGGACTACTTCTGGGCGATCAGGGGTGGCGGGGGCGAG AGCTTCGGCATCGTGGTGTCGTGGCAGGTGCAGCTCGTGCCGGTCCCGCCCAAGGTGACC GTGTTCCAGATCCACAGGGGGGTCAAGGACGGCGCCATCGACCTCATCAACAAATGGCAG CAGGTGGCGCCGTCCCTCCCCGATGACCTCATGATCCGGATCATGGCCATGGAGCAGGAT GCCATGTTCGAGGCCCTGTACCTGGGCACGTGCAAGGACCTCCTCCCGCTGATGGCCAGC CGCTTCCCGGAGCTGGGCGTCAAACAGGAGGACTGCAACGAGATGCCGTGGATCCAGTCC GTGGCCTTCATCCCCATGGGCAAGTCTGCCACCGTGATGGACCTCCTCAACCGGACGTCC AACATCAAGGCCTTCGGCAAGTACAAGTCGGACTACGTCAAGGACCCCATCCCCAGGGAC GTGTGGGAGAAGATCTACACCTGGCTCGCCAAGCCCGGGGCCGGGGTCATGATCATGGAC CCCTACGGCGCCAGGATCAGCTCCATCCCGAAGGATGCGACGCCGTTTCCGCACCGGCAG GGCGTGCTGTTCAACATCCAGTACGTCAGCTACTGGTTCGGCGAGGGCGACGGGGCGGCG CCGACACAGTGGAGCAGGGACATGTACGCGTTCATGGAGCCGTACGTCAGCAAGAACCCT AGGCAGGCGTACGCCAACTACAGGGACCTCGACCTTGGCGTCAACGAGGTGGTCGGCGAC GTCTCCACCTACGACAGCGGCAGGGTCTGGGGCGAGAAGTACTACAATGGCAACTTCGAG AGGCTCGCCAGGACTAAGGCCAAGGTGGACCCCTGCGACTACTTCAGGAACGAGCAGAGC ATCCCGCCATTGCTCAAGTGA

Peptide Sequence

PEP ID	Zm00001d046319_P001
PEP Infomation	pep chromosome:B73_RefGen_v4:9:80226391:80227971:1 gene:Zm00001d046319 transcript:Zm00001d046319_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Putative FAD-binding Berberine family protein
Sequence	MATSRPLALALLFCALSACSHAAISYPPSAMSTAAPANNGFLSCLIKSVPPRLLHGKSSR AYGSIWESTVRNVKFVSDKTVKPVYIITPTEAAHIQATVACGRKHGLRVRVRSGGHDYEG LSYRSAKPETFAVVDLSMMRQVRIDGKAATAWVDSGAQLGELYYAVAKMTPSLGFPAGVC ATIGVGGHFSGGGFGMLLRKYGTAGDNVIDAKVVDANGTLLDRKSMGEDYFWAIRGGGGE SFGIVVSWQVQLVPVPPKVTVFQIHRGVKDGAIDLINKWQQVAPSLPDDLMIRIMAMEQD AMFEALYLGTCKDLLPLMASRFPELGVKQEDCNEMPWIQSVAFIPMGKSATVMDLLNRTS NIKAFGKYKSDYVKDPIPRDVWEKIYTWLAKPGAGVMIMDPYGARISSIPKDATPFPHRQ GVLFNIQYVSYWFGEGDGAAPTQWSRDMYAFMEPYVSKNPRQAYANYRDLDLGVNEVVGD VSTYDSGRVWGEKYYNGNFERLARTKAKVDPCDYFRNEQSIPPLLK

Transcript Sequence

Transcript ID	Zm00001d046319_T001
Transcript Infomation	cdna chromosome:B73_RefGen_v4:9:80226391:80227971:1 gene:Zm00001d046319 gene_biotype:protein_coding transcript_biotype:protein_coding description:Putative FAD-binding Berberine family protein
Sequence	ATGGCGACATCAAGGCCCCTTGCCTTGGCGCTCCTCTTCTGCGCCTTGTCAGCCTGCAGC CACGCCGCCATTTCCTACCCACCGTCGGCCATGTCCACGGCGGCACCTGCCAACAATGGC TTTCTCTCGTGCCTCATCAAGAGCGTTCCCCCGCGGCTCCTCCACGGCAAGAGCTCGCGT GCGTACGGCTCCATCTGGGAGTCCACCGTCAGGAACGTCAAGTTCGTGTCGGACAAGACG GTGAAGCCGGTGTACATTATCACCCCCACCGAGGCCGCGCACATCCAGGCCACCGTGGCG TGCGGGCGCAAGCACGGGCTGCGGGTCCGCGTGCGGAGCGGCGGGCACGACTACGAGGGC CTGTCGTACCGGTCCGCCAAGCCGGAGACGTTCGCCGTGGTGGACCTGTCCATGATGCGG CAGGTGCGCATCGACGGCAAGGCCGCCACGGCGTGGGTGGACTCCGGCGCGCAGCTCGGC GAGCTCTACTACGCCGTGGCGAAGATGACCCCCAGCCTCGGGTTCCCGGCGGGCGTGTGC GCCACGATCGGCGTCGGGGGCCACTTCAGCGGGGGCGGCTTCGGCATGCTGCTGCGCAAG TACGGCACCGCCGGGGACAACGTCATCGACGCCAAGGTGGTGGACGCCAACGGCACCCTG CTGGACAGGAAGTCCATGGGCGAGGACTACTTCTGGGCGATCAGGGGTGGCGGGGGCGAG AGCTTCGGCATCGTGGTGTCGTGGCAGGTGCAGCTCGTGCCGGTCCCGCCCAAGGTGACC GTGTTCCAGATCCACAGGGGGGTCAAGGACGGCGCCATCGACCTCATCAACAAATGGCAG CAGGTGGCGCCGTCCCTCCCCGATGACCTCATGATCCGGATCATGGCCATGGAGCAGGAT GCCATGTTCGAGGCCCTGTACCTGGGCACGTGCAAGGACCTCCTCCCGCTGATGGCCAGC CGCTTCCCGGAGCTGGGCGTCAAACAGGAGGACTGCAACGAGATGCCGTGGATCCAGTCC GTGGCCTTCATCCCCATGGGCAAGTCTGCCACCGTGATGGACCTCCTCAACCGGACGTCC AACATCAAGGCCTTCGGCAAGTACAAGTCGGACTACGTCAAGGACCCCATCCCCAGGGAC GTGTGGGAGAAGATCTACACCTGGCTCGCCAAGCCCGGGGCCGGGGTCATGATCATGGAC CCCTACGGCGCCAGGATCAGCTCCATCCCGAAGGATGCGACGCCGTTTCCGCACCGGCAG GGCGTGCTGTTCAACATCCAGTACGTCAGCTACTGGTTCGGCGAGGGCGACGGGGCGGCG CCGACACAGTGGAGCAGGGACATGTACGCGTTCATGGAGCCGTACGTCAGCAAGAACCCT AGGCAGGCGTACGCCAACTACAGGGACCTCGACCTTGGCGTCAACGAGGTGGTCGGCGAC GTCTCCACCTACGACAGCGGCAGGGTCTGGGGCGAGAAGTACTACAATGGCAACTTCGAG AGGCTCGCCAGGACTAAGGCCAAGGTGGACCCCTGCGACTACTTCAGGAACGAGCAGAGC ATCCCGCCATTGCTCAAGTGA