Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d046318_T001
CDS Infomation	cds chromosome:B73_RefGen_v4:9:80198328:80199923:1 gene:Zm00001d046318 gene_biotype:protein_coding transcript_biotype:protein_coding description:Putative FAD-binding Berberine family protein
Sequence	ATGGCCATGGCCAAGAGCGTATTAGCGCCGCCGGTGCTCATATTTGCCTTGTTCTGCAGC TACTACGCCGCCTCCATGGCTTCGGCCCAAGCTGCCGCTTCGTCGTCCGATGGCTTCCTC CGGTGCCTCTCGGCGAGCATCCCCAGCCAGCTGGTGTTCACGCAGAGCTCGCCTTCGTTC ACGACGCTGCTCAAGTCGTCCATCAGGAACCCCAAGTTCTTCACGCCGAGCATCGTGAGG CCGCTGTACATCGTCACGCCGACGAACGCCTCCCACGCGCAGGACGCCGTGCTGTGCGGC CGCCAGAACGGGATGCGCCTGCGCGTGCGCAGCGGCGGCCACGACTACGAGGGCCTGTCG TACCGGTCCGAGCGGCCCGAGGCGTTCGCGGTGCTGGACCTGTCGAACCTCCGCGCCGTG CGCGTGGACCTCCAGACCTCGACCGCGTGGGTGGACTCCGGCGCCACGCTCGGGGAGCTC TACTACGCCGTCGGGAAGGCCAGCAACGTGCTGGGGTTCCCGGCCGGCCTGTGCCCGACC GTCGGCGTCGGGGGCCATTTCAGCGGCGGCGGCTTCGGCATGCTGCTGCGCAAGTACGGC CTGGCCATCGACAACGTCCTCGACGCCGTGCTGGTGGACGCCAGGGGGAGGCTCCTCAGC AAGAACACCATGGGGAGCGACGTCTTCTGGGCGATCCGTGGCGGCGGCGGCGAGAGCTTC GGTGTCGTGCTGTCGTGGCAGGTCAGGCTCGTGCCTGTCCCGGCAACGGTGGCGGTGTTC AACGTCCCGGTGCCCGCGAGCCAGGGCGCCGTGGACGTGGTCACCAGGTGGCAGCAGGTC GCGCCTGCCCTGCCGGACGACCTCTTCATCAGGGTGCTCGTCCAGCAGCAGACGGCCAAC TTCCAGTCCCTGTTCCTCGGCACGTGCGACGCGCTCCTGCCCGTCATGGGCAGCCGCTTC CCGGAGCTGGGGCTCAACCGCAGCTCCTGCAAGGAGATGACGTGGATCCAATCCGTGCCC TACATCTACCTCGGCAGCGGCTCCACGGTGGAGGACCTCCTGAACCGGACCACCTCCGCG TCCGTGTTCAGCAGCGGCTACAAGGCCACGTCCGACTACGTCCGGCAGGCCATCCCCCGG GACGTGTGGGCCAACATATTCAGCAGGCTCGCGCAGCCCAACGCGGGGCTCATGATTCTG GACCCCTACGGCGCGCAGATCAGCACCGTGCCGGAGTCGGCGACGCCGTTCCCGCACCGC GCCGGCGTGCTGTACAACATCCAGTACATGAACTTCTGGCCCATGGCTGGGGGAGGAGAC GGAGCCGTCCAGACCAAGTGGGTCAGGGACTTGTACGCGTTCATGGCACCGTACGTGAGC TCCAACCCGAGGGAGGCCTACTTCAACTACAGGGACCTGGACCTTGGTGAGAACGTCGTT GTGGGCAACGTCAGCAGCTACCAGGCCGGTATGGTGTGGGGACACAAGTACTTCAAGGAC AACTATCAGAGGCTCGCCGTGGCCAAGAGTCAGATAGACCCCGACGACTACTTCAGGAAC GAGCAGAGCATCCCGCCACTTGCCAACAGCAACTAG

Peptide Sequence

PEP ID	Zm00001d046318_P001
PEP Infomation	pep chromosome:B73_RefGen_v4:9:80198328:80199923:1 gene:Zm00001d046318 transcript:Zm00001d046318_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Putative FAD-binding Berberine family protein
Sequence	MAMAKSVLAPPVLIFALFCSYYAASMASAQAAASSSDGFLRCLSASIPSQLVFTQSSPSF TTLLKSSIRNPKFFTPSIVRPLYIVTPTNASHAQDAVLCGRQNGMRLRVRSGGHDYEGLS YRSERPEAFAVLDLSNLRAVRVDLQTSTAWVDSGATLGELYYAVGKASNVLGFPAGLCPT VGVGGHFSGGGFGMLLRKYGLAIDNVLDAVLVDARGRLLSKNTMGSDVFWAIRGGGGESF GVVLSWQVRLVPVPATVAVFNVPVPASQGAVDVVTRWQQVAPALPDDLFIRVLVQQQTAN FQSLFLGTCDALLPVMGSRFPELGLNRSSCKEMTWIQSVPYIYLGSGSTVEDLLNRTTSA SVFSSGYKATSDYVRQAIPRDVWANIFSRLAQPNAGLMILDPYGAQISTVPESATPFPHR AGVLYNIQYMNFWPMAGGGDGAVQTKWVRDLYAFMAPYVSSNPREAYFNYRDLDLGENVV VGNVSSYQAGMVWGHKYFKDNYQRLAVAKSQIDPDDYFRNEQSIPPLANSN

Transcript Sequence

Transcript ID	Zm00001d046318_T001
Transcript Infomation	cdna chromosome:B73_RefGen_v4:9:80198328:80199923:1 gene:Zm00001d046318 gene_biotype:protein_coding transcript_biotype:protein_coding description:Putative FAD-binding Berberine family protein
Sequence	ATGGCCATGGCCAAGAGCGTATTAGCGCCGCCGGTGCTCATATTTGCCTTGTTCTGCAGC TACTACGCCGCCTCCATGGCTTCGGCCCAAGCTGCCGCTTCGTCGTCCGATGGCTTCCTC CGGTGCCTCTCGGCGAGCATCCCCAGCCAGCTGGTGTTCACGCAGAGCTCGCCTTCGTTC ACGACGCTGCTCAAGTCGTCCATCAGGAACCCCAAGTTCTTCACGCCGAGCATCGTGAGG CCGCTGTACATCGTCACGCCGACGAACGCCTCCCACGCGCAGGACGCCGTGCTGTGCGGC CGCCAGAACGGGATGCGCCTGCGCGTGCGCAGCGGCGGCCACGACTACGAGGGCCTGTCG TACCGGTCCGAGCGGCCCGAGGCGTTCGCGGTGCTGGACCTGTCGAACCTCCGCGCCGTG CGCGTGGACCTCCAGACCTCGACCGCGTGGGTGGACTCCGGCGCCACGCTCGGGGAGCTC TACTACGCCGTCGGGAAGGCCAGCAACGTGCTGGGGTTCCCGGCCGGCCTGTGCCCGACC GTCGGCGTCGGGGGCCATTTCAGCGGCGGCGGCTTCGGCATGCTGCTGCGCAAGTACGGC CTGGCCATCGACAACGTCCTCGACGCCGTGCTGGTGGACGCCAGGGGGAGGCTCCTCAGC AAGAACACCATGGGGAGCGACGTCTTCTGGGCGATCCGTGGCGGCGGCGGCGAGAGCTTC GGTGTCGTGCTGTCGTGGCAGGTCAGGCTCGTGCCTGTCCCGGCAACGGTGGCGGTGTTC AACGTCCCGGTGCCCGCGAGCCAGGGCGCCGTGGACGTGGTCACCAGGTGGCAGCAGGTC GCGCCTGCCCTGCCGGACGACCTCTTCATCAGGGTGCTCGTCCAGCAGCAGACGGCCAAC TTCCAGTCCCTGTTCCTCGGCACGTGCGACGCGCTCCTGCCCGTCATGGGCAGCCGCTTC CCGGAGCTGGGGCTCAACCGCAGCTCCTGCAAGGAGATGACGTGGATCCAATCCGTGCCC TACATCTACCTCGGCAGCGGCTCCACGGTGGAGGACCTCCTGAACCGGACCACCTCCGCG TCCGTGTTCAGCAGCGGCTACAAGGCCACGTCCGACTACGTCCGGCAGGCCATCCCCCGG GACGTGTGGGCCAACATATTCAGCAGGCTCGCGCAGCCCAACGCGGGGCTCATGATTCTG GACCCCTACGGCGCGCAGATCAGCACCGTGCCGGAGTCGGCGACGCCGTTCCCGCACCGC GCCGGCGTGCTGTACAACATCCAGTACATGAACTTCTGGCCCATGGCTGGGGGAGGAGAC GGAGCCGTCCAGACCAAGTGGGTCAGGGACTTGTACGCGTTCATGGCACCGTACGTGAGC TCCAACCCGAGGGAGGCCTACTTCAACTACAGGGACCTGGACCTTGGTGAGAACGTCGTT GTGGGCAACGTCAGCAGCTACCAGGCCGGTATGGTGTGGGGACACAAGTACTTCAAGGAC AACTATCAGAGGCTCGCCGTGGCCAAGAGTCAGATAGACCCCGACGACTACTTCAGGAAC GAGCAGAGCATCCCGCCACTTGCCAACAGCAACTAG