Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d046304_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:9:79526538:79538933:1 gene:Zm00001d046304 gene_biotype:protein_coding transcript_biotype:protein_coding description:RING/FYVE/PHD-type zinc finger family protein
Sequence

ATGTGCGAGCTCATGGAGACGGAGCTACGGTTCATGACAGTGAACGACGCGGAGCAGTAC
ACGATGTCGTCACTAGAGCTGCTGGAGCATAGCCTGGAGGAGGCCACCGGCTCCATGAAG
GTGGAGTGCATGCAGAAGGAGCCGCCGCTGATCGTCATGGTGCTGAAGGTACACATGCAC
TGCAAGGCCTATGCCGAGGGGATCTGGAAGAGGATTCTTAATATGAAAGGTGTGCAGTCC
ATAGAACTAGACCTCAAGGCATTAGAGGTTTCTCTCATGTCCATTAAGGTTTGGAGATTG
GAGGCGGTGGTGGCGGAGTTGGAGTGTAGGAACTATGAGTTGTTTAGTGAGAAGGGTGAA
CTTGAGAAGAAATTGGTGGCTGTCGAGGAGGTGATTCAAATGGTATCCAAAGAGAAAGAG
GGTGTTGCTAAGGCTCTTGATGTTGAGAAGCGATCTGAATTGGAGCCGTTTACTGCTGAC
ATGGCGGGAACTGATCGCCTCTACCCTGAAATTGGGACGTATGACCTGGAGCCCCCGCAG
GTCCCAGCCTCCGCCGGGGGCAGCGGCGAGGAGGAGGCCGGGGTTTGCGACGCACTGGTG
ATGTGGGACGACGAATCCGACGCGTGTCCCTCCCATGAAGCGGCCCCCATCATATTTGAG
AAGGGCACTAGGGATCCTCCTCCTAAAGTTTTCAAGGAAGAAAGGCTTGATGTTGTCCAT
TATTCAGAGTTCAGCGATGAGATGGCGACTGAGAAGGAATTCGGAGAAAACAACTATGAC
AGTTTCCCTTCTTGTGAACAAACAGGCATCATATGGGTGCCTCCCTCTGTTCCACCTATG
CCAAAACATGATCACGATGAGTGGCAAAAGGGCTTTGGTTACAATAGTCCGTGCTTCCCA
GAGGAAGAATATAAGTGGGATATTGACGAAGAAAATTTGGAGATGACAATGTGGGATGTG
CTCTCTGAGATGGTTGTTGCAGGAAAGGATAAAATATTATCCATTGCATCATTTGATTTA
GGAATGTATGGCACGTCTATGATTTCAGATTTTTGCCTTGAAGAGACTTTGAAGGATAAG
GCCCAAACACTTAAAGATGTCAGTGCTGGTTCTGAACATGCTCTCCTTGAGACAGAACTA
ACAAAGTGGTTGCCTGATAGTGCTTCAACTTCCTGTATGCTTTGTGGAGCACGTTTTCAT
CCAATAATTTGTGCTCGCCATCATTGCCGATTTTGTGGTGGGATATTTTGTGGTGGCTGT
TCAAAGGGTAGAAGCTTGATGCCCCCAAAGTTCATGAACTCAGATCCTCAAAGGGTCTGT
GATGTTTGTGGAGTGCGTCTTGAGTGTATACAACCTTATTTGATGAATCGATTCAGTCGT
GCTTGTCAACTTCCAACTCAAGACTTGACTGACCTAAGCACCTTGAGGTCATGGATAAAC
ACCCCATGGGCAGTCAGAATGGAGTATGAGATCTACAAAGCGGCAAATTCCATACATGGC
TATTGTAAGGTGGGAGAGCTGAAACCTGAGAAGTCGATCCCTGATTCAATTCTCAGACAA
GCAAAAGGGCTTGCAATCATCACTGAGGTAAAGGTTGGAGTGATGCTTACATACAAAATC
GGTACTGGATTGGTTGTTGCTCGGAGAGGTGATGGTTCTTGGTCCCCTCCTTCAGCCATC
TCTACTTGTGGTCTTGGATATGGAGTTCAGGCTGGAGGTGAGTTGGCTGACTACATCATT
GTTCTTAGGAACAAAGATGCCATCAAAACTTTTAGTGGAAATGCACATATGTCAATTGGG
GCTGGTGTTAGTGCTTCTGCTGGTCATTTTGGACGAGTGGCAGAGGCTGATTTCCGTGCT
GGTGATGGTGGTTATGCTGCCTGTTACACATACAGTTGTAGCAAAGGTGCCTTTGTGGGC
TGTGCGCTCAATGGAAGTGTGGTGTCCACTCGAGACTCGGTAAATGCCCGGTTTTACGGT
GGTCCGATTAAGGCCTCAGAAATCCTTCTTGGGTCGCTGCCAAAACCGCCTGCTGCCGCA
ACTCTATACAAGGCTTTATCTGTATTATTTGATAAGATCGAGAAGTGA

Peptide Sequence

PEP ID

Zm00001d046304_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:9:79526538:79538933:1 gene:Zm00001d046304 transcript:Zm00001d046304_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:RING/FYVE/PHD-type zinc finger family protein
Sequence

MCELMETELRFMTVNDAEQYTMSSLELLEHSLEEATGSMKVECMQKEPPLIVMVLKVHMH
CKAYAEGIWKRILNMKGVQSIELDLKALEVSLMSIKVWRLEAVVAELECRNYELFSEKGE
LEKKLVAVEEVIQMVSKEKEGVAKALDVEKRSELEPFTADMAGTDRLYPEIGTYDLEPPQ
VPASAGGSGEEEAGVCDALVMWDDESDACPSHEAAPIIFEKGTRDPPPKVFKEERLDVVH
YSEFSDEMATEKEFGENNYDSFPSCEQTGIIWVPPSVPPMPKHDHDEWQKGFGYNSPCFP
EEEYKWDIDEENLEMTMWDVLSEMVVAGKDKILSIASFDLGMYGTSMISDFCLEETLKDK
AQTLKDVSAGSEHALLETELTKWLPDSASTSCMLCGARFHPIICARHHCRFCGGIFCGGC
SKGRSLMPPKFMNSDPQRVCDVCGVRLECIQPYLMNRFSRACQLPTQDLTDLSTLRSWIN
TPWAVRMEYEIYKAANSIHGYCKVGELKPEKSIPDSILRQAKGLAIITEVKVGVMLTYKI
GTGLVVARRGDGSWSPPSAISTCGLGYGVQAGGELADYIIVLRNKDAIKTFSGNAHMSIG
AGVSASAGHFGRVAEADFRAGDGGYAACYTYSCSKGAFVGCALNGSVVSTRDSVNARFYG
GPIKASEILLGSLPKPPAAATLYKALSVLFDKIEK

Transcript Sequence

Transcript ID

Zm00001d046304_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:9:79526538:79538933:1 gene:Zm00001d046304 gene_biotype:protein_coding transcript_biotype:protein_coding description:RING/FYVE/PHD-type zinc finger family protein
Sequence

ATGTGCGAGCTCATGGAGACGGAGCTACGGTTCATGACAGTGAACGACGCGGAGCAGTAC
ACGATGTCGTCACTAGAGCTGCTGGAGCATAGCCTGGAGGAGGCCACCGGCTCCATGAAG
GTGGAGTGCATGCAGAAGGAGCCGCCGCTGATCGTCATGGTGCTGAAGGTACACATGCAC
TGCAAGGCCTATGCCGAGGGGATCTGGAAGAGGATTCTTAATATGAAAGGTGTGCAGTCC
ATAGAACTAGACCTCAAGGCATTAGAGGTTTCTCTCATGTCCATTAAGGTTTGGAGATTG
GAGGCGGTGGTGGCGGAGTTGGAGTGTAGGAACTATGAGTTGTTTAGTGAGAAGGGTGAA
CTTGAGAAGAAATTGGTGGCTGTCGAGGAGGTGATTCAAATGGTATCCAAAGAGAAAGAG
GGTGTTGCTAAGGCTCTTGATGTTGAGAAGCGATCTGAATTGGAGCCGTTTACTGCTGAC
ATGGCGGGAACTGATCGCCTCTACCCTGAAATTGGGACGTATGACCTGGAGCCCCCGCAG
GTCCCAGCCTCCGCCGGGGGCAGCGGCGAGGAGGAGGCCGGGGTTTGCGACGCACTGGTG
ATGTGGGACGACGAATCCGACGCGTGTCCCTCCCATGAAGCGGCCCCCATCATATTTGAG
AAGGGCACTAGGGATCCTCCTCCTAAAGTTTTCAAGGAAGAAAGGCTTGATGTTGTCCAT
TATTCAGAGTTCAGCGATGAGATGGCGACTGAGAAGGAATTCGGAGAAAACAACTATGAC
AGTTTCCCTTCTTGTGAACAAACAGGCATCATATGGGTGCCTCCCTCTGTTCCACCTATG
CCAAAACATGATCACGATGAGTGGCAAAAGGGCTTTGGTTACAATAGTCCGTGCTTCCCA
GAGGAAGAATATAAGTGGGATATTGACGAAGAAAATTTGGAGATGACAATGTGGGATGTG
CTCTCTGAGATGGTTGTTGCAGGAAAGGATAAAATATTATCCATTGCATCATTTGATTTA
GGAATGTATGGCACGTCTATGATTTCAGATTTTTGCCTTGAAGAGACTTTGAAGGATAAG
GCCCAAACACTTAAAGATGTCAGTGCTGGTTCTGAACATGCTCTCCTTGAGACAGAACTA
ACAAAGTGGTTGCCTGATAGTGCTTCAACTTCCTGTATGCTTTGTGGAGCACGTTTTCAT
CCAATAATTTGTGCTCGCCATCATTGCCGATTTTGTGGTGGGATATTTTGTGGTGGCTGT
TCAAAGGGTAGAAGCTTGATGCCCCCAAAGTTCATGAACTCAGATCCTCAAAGGGTCTGT
GATGTTTGTGGAGTGCGTCTTGAGTGTATACAACCTTATTTGATGAATCGATTCAGTCGT
GCTTGTCAACTTCCAACTCAAGACTTGACTGACCTAAGCACCTTGAGGTCATGGATAAAC
ACCCCATGGGCAGTCAGAATGGAGTATGAGATCTACAAAGCGGCAAATTCCATACATGGC
TATTGTAAGGTGGGAGAGCTGAAACCTGAGAAGTCGATCCCTGATTCAATTCTCAGACAA
GCAAAAGGGCTTGCAATCATCACTGAGGTAAAGGTTGGAGTGATGCTTACATACAAAATC
GGTACTGGATTGGTTGTTGCTCGGAGAGGTGATGGTTCTTGGTCCCCTCCTTCAGCCATC
TCTACTTGTGGTCTTGGATATGGAGTTCAGGCTGGAGGTGAGTTGGCTGACTACATCATT
GTTCTTAGGAACAAAGATGCCATCAAAACTTTTAGTGGAAATGCACATATGTCAATTGGG
GCTGGTGTTAGTGCTTCTGCTGGTCATTTTGGACGAGTGGCAGAGGCTGATTTCCGTGCT
GGTGATGGTGGTTATGCTGCCTGTTACACATACAGTTGTAGCAAAGGTGCCTTTGTGGGC
TGTGCGCTCAATGGAAGTGTGGTGTCCACTCGAGACTCGGTAAATGCCCGGTTTTACGGT
GGTCCGATTAAGGCCTCAGAAATCCTTCTTGGGTCGCTGCCAAAACCGCCTGCTGCCGCA
ACTCTATACAAGGCTTTATCTGTATTATTTGATAAGATCGAGAAGTGAATCTCCTGATCC
TTCTCTTTAGTTTGCGACACGCAGGGTAGCATGGTGAATTGAATTATTTATGGGTCATTG
GTTCGCTCTATTTACCTTATCCTAGTTGGTGATGATGCAAGTGTACACCTGACGATCCAC
TGTTTTCCATCAAACTGAGGTATTTGGAACCACAAACCACTCTGTAAATTTTGTAGACAA
TTCTCGTTAGAAATGAAAAGGAAACCATTTTTTCAACTG