Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d046286_T001
CDS Infomation	cds chromosome:B73_RefGen_v4:9:78302831:78308609:1 gene:Zm00001d046286 gene_biotype:protein_coding transcript_biotype:protein_coding description:RPGR ORF15 isoform
Sequence	ATGGCAAGGAGGTCGAAGCACCTGGGGCAGGGCGTGGTGGAGACGAACCTCCCGTATTGC TTCTTTAGGTTGGGCATGTCGTGGCCCCTAGAATTCGACGACCAACAATCCCGGGGAATG GGAGGGCGGGGGTGGCCGCGGACCATCACCACTTCCTTGGATGTAGCACAGGATCTGGGA GCTGCTCGTCCGCCAGAACCAAGCAGGGGGACTTTCGTGGACAGCAGTTGTCACTATGTG ACAAGGGTCTGCCGGTCTGGAGATGTTTCTGTGCTGAATTTGCTTGTTCCGCACAAGTGG ATCGGTGTAAACATGCTTCATCATTCAAATAGCCGGAACCAAAGGAACAGGGGATCAAGA ATCAAAACTCTACTCCAAGCGACCTTGCTTTCAGGTGTTGTCTTTTGGCTCCTGTATCAG GTGAAGCATTCCTATGATAAGAAAAACGAGTACTTGGATGATGCTGAGGACCAGCTTACC CATAATGATAGAAGCATATTCCAGGCGAGGAAACAAAAGGCAGGTAGTTACAGTGATAGC AACGTCCAAATGGTTGTCGACAATTCTGATGTAACAACTAAACCAGAGGAAGGTGATGTA GATCATCATTCTGATACTTTTGATCATAACGAGAAGACTGTAGAAACTGTGTTCGATAAA GATAGTACTAACCTGCATGAAGATGACAAGAGAAACACTGAGAGTTCAGAAGCGGAAGGA CAAGTCAACAGTGGAGATAGTAATACAGAAGCTAATAATAATAAGAATGAAGATGAAACC ACCAGTCTTGTAGAAGGACGCAAGCATGATACTGAATCCAACTCTGCTGCTGAGAGTAAA AGTGAAGTCAATTCAACTGGAGATGAATTGTCCCAAAACAATCATGCACAAGAGGAAAAC ACTAGGGAGGCAAGTGGAATGTCTCATGATGAAGTAGCGCATGGTGACGAATCAACCAGT GCAAGTGGAACTTGGAATGGATCAGATGGAGAAGGTGAGAAAAAGGAGGCAGTTGATACT CAAACTGGTTCTGAAACCCTTCCTGACGATGCCAAGACCGAAGCAACTGATGACCGTGGT ACTAACAGCCTTTCTGACGAAACAGGGAACATACCATCAGTTCATACTGATAATTCACAA AATGATGCCAGTGAAAACCAAGGAGATGCAACATCCACTACCTCAGATTCATCTGAGCAT GGCATCAGTGAGGCTGTCCATATTGAAACTGGATTGGAACATGGAAGTGCAACAACATCA TCTGTTACTGGATCTGAAACGTCTACCAATGGTGAGCAGGTGGATCCCAAGACTGAAACT AGCACATCCACCAGTAACGTGCACAATGAATCTCAAGGGGCTGATGGCAGTTCTGGATCA AATAACTCAATTGGTAACGGCCCTGAACAAACCGGTAAAACTGAAAGGCAGTGA

Peptide Sequence

PEP ID	Zm00001d046286_P001
PEP Infomation	pep chromosome:B73_RefGen_v4:9:78302831:78308609:1 gene:Zm00001d046286 transcript:Zm00001d046286_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:RPGR ORF15 isoform
Sequence	MARRSKHLGQGVVETNLPYCFFRLGMSWPLEFDDQQSRGMGGRGWPRTITTSLDVAQDLG AARPPEPSRGTFVDSSCHYVTRVCRSGDVSVLNLLVPHKWIGVNMLHHSNSRNQRNRGSR IKTLLQATLLSGVVFWLLYQVKHSYDKKNEYLDDAEDQLTHNDRSIFQARKQKAGSYSDS NVQMVVDNSDVTTKPEEGDVDHHSDTFDHNEKTVETVFDKDSTNLHEDDKRNTESSEAEG QVNSGDSNTEANNNKNEDETTSLVEGRKHDTESNSAAESKSEVNSTGDELSQNNHAQEEN TREASGMSHDEVAHGDESTSASGTWNGSDGEGEKKEAVDTQTGSETLPDDAKTEATDDRG TNSLSDETGNIPSVHTDNSQNDASENQGDATSTTSDSSEHGISEAVHIETGLEHGSATTS SVTGSETSTNGEQVDPKTETSTSTSNVHNESQGADGSSGSNNSIGNGPEQTGKTERQ

Transcript Sequence

Transcript ID	Zm00001d046286_T001
Transcript Infomation	cdna chromosome:B73_RefGen_v4:9:78302831:78308609:1 gene:Zm00001d046286 gene_biotype:protein_coding transcript_biotype:protein_coding description:RPGR ORF15 isoform
Sequence	ATGGCAAGGAGGTCGAAGCACCTGGGGCAGGGCGTGGTGGAGACGAACCTCCCGTATTGC TTCTTTAGGTTGGGCATGTCGTGGCCCCTAGAATTCGACGACCAACAATCCCGGGGAATG GGAGGGCGGGGGTGGCCGCGGACCATCACCACTTCCTTGGATGTAGCACAGGATCTGGGA GCTGCTCGTCCGCCAGAACCAAGCAGGGGGACTTTCGTGGACAGCAGTTGTCACTATGTG ACAAGGGTCTGCCGGTCTGGAGATGTTTCTGTGCTGAATTTGCTTGTTCCGCACAAGTGG ATCGGTGTAAACATGCTTCATCATTCAAATAGCCGGAACCAAAGGAACAGGGGATCAAGA ATCAAAACTCTACTCCAAGCGACCTTGCTTTCAGGTGTTGTCTTTTGGCTCCTGTATCAG GTGAAGCATTCCTATGATAAGAAAAACGAGTACTTGGATGATGCTGAGGACCAGCTTACC CATAATGATAGAAGCATATTCCAGGCGAGGAAACAAAAGGCAGGTAGTTACAGTGATAGC AACGTCCAAATGGTTGTCGACAATTCTGATGTAACAACTAAACCAGAGGAAGGTGATGTA GATCATCATTCTGATACTTTTGATCATAACGAGAAGACTGTAGAAACTGTGTTCGATAAA GATAGTACTAACCTGCATGAAGATGACAAGAGAAACACTGAGAGTTCAGAAGCGGAAGGA CAAGTCAACAGTGGAGATAGTAATACAGAAGCTAATAATAATAAGAATGAAGATGAAACC ACCAGTCTTGTAGAAGGACGCAAGCATGATACTGAATCCAACTCTGCTGCTGAGAGTAAA AGTGAAGTCAATTCAACTGGAGATGAATTGTCCCAAAACAATCATGCACAAGAGGAAAAC ACTAGGGAGGCAAGTGGAATGTCTCATGATGAAGTAGCGCATGGTGACGAATCAACCAGT GCAAGTGGAACTTGGAATGGATCAGATGGAGAAGGTGAGAAAAAGGAGGCAGTTGATACT CAAACTGGTTCTGAAACCCTTCCTGACGATGCCAAGACCGAAGCAACTGATGACCGTGGT ACTAACAGCCTTTCTGACGAAACAGGGAACATACCATCAGTTCATACTGATAATTCACAA AATGATGCCAGTGAAAACCAAGGAGATGCAACATCCACTACCTCAGATTCATCTGAGCAT GGCATCAGTGAGGCTGTCCATATTGAAACTGGATTGGAACATGGAAGTGCAACAACATCA TCTGTTACTGGATCTGAAACGTCTACCAATGGTGAGCAGGTGGATCCCAAGACTGAAACT AGCACATCCACCAGTAACGTGCACAATGAATCTCAAGGGGCTGATGGCAGTTCTGGATCA AATAACTCAATTGGTAACGGCCCTGAACAAACCGGTAAAACTGAAAGGCAGTGA