Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d046004_T002
CDS Infomation

cds chromosome:B73_RefGen_v4:9:53385950:53388295:1 gene:Zm00001d046004 gene_biotype:protein_coding transcript_biotype:protein_coding description:HGA4

Sequence

ATGGCGTCAACGGCGTACTCGCGGCCATCCAAGCCGCCTGGGCCGGCGGCCGGAGACAGG
AGCGGACCGCGGCTGGCCAAGGAGCTCGGCAGGATCGAGCCCAAGAAGCTGGGCATCGGG
CTGGTTGCCGGCTGCTGCTTCGCGCTGCTCACCTACCTCTCCTTTGCCCGGCTGTTTGCC
ATCTACTCGCCGGTTTTCGACAGCTCGTCGTCCATGGTGTTGAAGAACATGCCGCCAGCA
ACGACGACGGTGCCGGGTACAGCTACAGGGGCGCTGCCGGTGGAGGAGCAGAAAGAGGTT
CGTGACCCTGAGGCGGACCCGCACATGCCGAACTTACCGGAGGTCACAGAAAAGGATCAG
CAGGAGGAGGCCACGGCGACGAAGCCAGAGGCCAAGATCACCTGCGACGAGAACGGCGTC
GACGAGGGCTTCCCGTACGCACGGCCGCCGGTTTGTGAGCTAGCCGGCGACATCCGTGTC
AGTCCTAAGGAGAAAACCATGTACTTCGTTAACCCGTCCGGCGCCGGCCCGTTCGACTCC
AACGGGGAGAAGAAGATCCGACCGTTCGCCCGCAAGGACGACTTCCTCCTCCCCGGCGTC
GTGGAGGTCACGATCAAGTCCGTGTCCTCGGCCGCAGCCGCGCCGCGGTGCACCCGCCGG
CACGACGTCCCGGTGGTGGTCTTCTCCGTGGCCGGGTACACGGACAACTTCTTCCACGAC
AACACGGACGTGCTGATCCCGCTGTTCCTCACCACGGCGCACCTGCAAGGAGAGGTGCAG
CTCCTCGTCACCAACTACAAGCCGTGGTGGGTGCGCAAGTTCACGCCCCTGCTCAGGAAG
CTCTCCAACTACGACGTCATCGACTTCGGCAAGGACGACGAGGTGCACTGCTTCCGGGCA
GGCCACCTCGGGATGTACCGCGACCGCGATCTCATCATCTCCCCTCACCCCACGCGCAAC
CCGCGCAACTACTCCATGGTTGACTACAACCGCTTCCTCCGCCGCGCCTTCAACCTGCCG
CGCGACGCGCCGGCGGTGCTCGGGGAGGAGACCAGCGCCAAGCCTCAGATGCTCATCATC
GAGCGGAAGGGCACGCGGAAGCTGCTCAACCTACCCGAGGTGTCCGCGCTGTGCGAGGCG
CTCGGCTTCGCGGTGACCGTGGCAGAGGCCGACGCTGACGTGCGTGTGTTCGCGGAGAAG
GTGAACGCGGCCGACGTGCTCCTCGCGGTGCACGGCGCCGGGCTCACGAACCAGATCTTC
CTGCCCACGGGCGCCGTGCTCGTGCAGATCGTGCCGTGGGGCAAGATGGACTGGATGGCC
ACCAACTTCTACGGCCAGCCGGCGCGCGACATGCGCCTCCGGTACGTCGAGTACTACGTC
TCGGAGGAGGAGACGACGCTCAAGGACAAGTACCCAAGGGACCACTACGTGTTCAAGGAC
CCAATGCACATCCACGCGCAGGGGTGGCCAGCGATCGCCGAGATCATCATGAAGCAGGAT
GTCATGGTCAACATGACAAGGTTCAAACCCTTCTTGCTCCAGGCGCTCAACGAGTTGCAG
GACTAG

Peptide Sequence

PEP ID

Zm00001d046004_P002
PEP Infomation

pep chromosome:B73_RefGen_v4:9:53385950:53388295:1 gene:Zm00001d046004 transcript:Zm00001d046004_T002 gene_biotype:protein_coding transcript_biotype:protein_coding description:HGA4

Sequence

MASTAYSRPSKPPGPAAGDRSGPRLAKELGRIEPKKLGIGLVAGCCFALLTYLSFARLFA
IYSPVFDSSSSMVLKNMPPATTTVPGTATGALPVEEQKEVRDPEADPHMPNLPEVTEKDQ
QEEATATKPEAKITCDENGVDEGFPYARPPVCELAGDIRVSPKEKTMYFVNPSGAGPFDS
NGEKKIRPFARKDDFLLPGVVEVTIKSVSSAAAAPRCTRRHDVPVVVFSVAGYTDNFFHD
NTDVLIPLFLTTAHLQGEVQLLVTNYKPWWVRKFTPLLRKLSNYDVIDFGKDDEVHCFRA
GHLGMYRDRDLIISPHPTRNPRNYSMVDYNRFLRRAFNLPRDAPAVLGEETSAKPQMLII
ERKGTRKLLNLPEVSALCEALGFAVTVAEADADVRVFAEKVNAADVLLAVHGAGLTNQIF
LPTGAVLVQIVPWGKMDWMATNFYGQPARDMRLRYVEYYVSEEETTLKDKYPRDHYVFKD
PMHIHAQGWPAIAEIIMKQDVMVNMTRFKPFLLQALNELQD

Transcript Sequence

Transcript ID

Zm00001d046004_T002
Transcript Infomation

cdna chromosome:B73_RefGen_v4:9:53385950:53388295:1 gene:Zm00001d046004 gene_biotype:protein_coding transcript_biotype:protein_coding description:HGA4

Sequence

GTGTTTTGTTCTCTGTGAGCGTCGTGGGTGTTGATGGCGTCAACGGCGTACTCGCGGCCA
TCCAAGCCGCCTGGGCCGGCGGCCGGAGACAGGAGCGGACCGCGGCTGGCCAAGGAGCTC
GGCAGGATCGAGCCCAAGAAGCTGGGCATCGGGCTGGTTGCCGGCTGCTGCTTCGCGCTG
CTCACCTACCTCTCCTTTGCCCGGCTGTTTGCCATCTACTCGCCGGTTTTCGACAGCTCG
TCGTCCATGGTGTTGAAGAACATGCCGCCAGCAACGACGACGGTGCCGGGTACAGCTACA
GGGGCGCTGCCGGTGGAGGAGCAGAAAGAGGTTCGTGACCCTGAGGCGGACCCGCACATG
CCGAACTTACCGGAGGTCACAGAAAAGGATCAGCAGGAGGAGGCCACGGCGACGAAGCCA
GAGGCCAAGATCACCTGCGACGAGAACGGCGTCGACGAGGGCTTCCCGTACGCACGGCCG
CCGGTTTGTGAGCTAGCCGGCGACATCCGTGTCAGTCCTAAGGAGAAAACCATGTACTTC
GTTAACCCGTCCGGCGCCGGCCCGTTCGACTCCAACGGGGAGAAGAAGATCCGACCGTTC
GCCCGCAAGGACGACTTCCTCCTCCCCGGCGTCGTGGAGGTCACGATCAAGTCCGTGTCC
TCGGCCGCAGCCGCGCCGCGGTGCACCCGCCGGCACGACGTCCCGGTGGTGGTCTTCTCC
GTGGCCGGGTACACGGACAACTTCTTCCACGACAACACGGACGTGCTGATCCCGCTGTTC
CTCACCACGGCGCACCTGCAAGGAGAGGTGCAGCTCCTCGTCACCAACTACAAGCCGTGG
TGGGTGCGCAAGTTCACGCCCCTGCTCAGGAAGCTCTCCAACTACGACGTCATCGACTTC
GGCAAGGACGACGAGGTGCACTGCTTCCGGGCAGGCCACCTCGGGATGTACCGCGACCGC
GATCTCATCATCTCCCCTCACCCCACGCGCAACCCGCGCAACTACTCCATGGTTGACTAC
AACCGCTTCCTCCGCCGCGCCTTCAACCTGCCGCGCGACGCGCCGGCGGTGCTCGGGGAG
GAGACCAGCGCCAAGCCTCAGATGCTCATCATCGAGCGGAAGGGCACGCGGAAGCTGCTC
AACCTACCCGAGGTGTCCGCGCTGTGCGAGGCGCTCGGCTTCGCGGTGACCGTGGCAGAG
GCCGACGCTGACGTGCGTGTGTTCGCGGAGAAGGTGAACGCGGCCGACGTGCTCCTCGCG
GTGCACGGCGCCGGGCTCACGAACCAGATCTTCCTGCCCACGGGCGCCGTGCTCGTGCAG
ATCGTGCCGTGGGGCAAGATGGACTGGATGGCCACCAACTTCTACGGCCAGCCGGCGCGC
GACATGCGCCTCCGGTACGTCGAGTACTACGTCTCGGAGGAGGAGACGACGCTCAAGGAC
AAGTACCCAAGGGACCACTACGTGTTCAAGGACCCAATGCACATCCACGCGCAGGGGTGG
CCAGCGATCGCCGAGATCATCATGAAGCAGGATGTCATGGTCAACATGACAAGGTTCAAA
CCCTTCTTGCTCCAGGCGCTCAACGAGTTGCAGGACTAGCTGCAGCTGGAGAAGGGTGAT
TCCCTTTGTATGGCTCGATACGGACAGTTCGGATAGGGCGATAGGCCAGCACAGATGCGG
TACAGGAGGGCCTTTCGTTTGTTTCCCTTTTTTATTTGTCATTTTAAATCAACTAAAATT
GATATTTTTATTTGGGACTGTTTATTAACACGCCGTTGTGCAATTTAAAACAGATACAAG
TTAGGATCTAATTGAGAAATTTTCACCAGCTACAAACTCACCAAAAATAATTTTATTTTA
CCAAAAGTTACTCAAATGGAATAGATTAACGAAGTCCAGATTATTCACTAATATATGAAT
CTGAGGACTAAATTCAACAGATTTGATGAAATTTCTCGAGAGATACTCCATCAACTCATG
TTTAGTTGATTGAAGAAAATTATCCAACATTATCACTCTTTAACGAAATACTCGATTCAT
TTGTTTTTCTCTTCTTCTATTTCCCCAGAACTACTTGTTGGATCTTTTATGGGCTTAGCC
CATTTATTGAATAAACTCTATGGTG