Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d045978_T009
CDS Infomation

cds chromosome:B73_RefGen_v4:9:51376996:51394263:-1 gene:Zm00001d045978 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein MICRORCHIDIA 6
Sequence

ATGCTAGTAGACATTGTTGATCTTTCCAGTGATGATGACGAGGTGGCTGTTACAGAAGAA
CACAGTGTTGATGGAAAAGGTGTTTATGCGAAGGCAAATTTTTTTGACTTAACTATTGAC
GATGGCATTCTTGAAGGAGAGCATATTGCTTACGAACAAGAACAAGGAGATTCTGCTCAG
GGCACATCATTTTATAAACAAGAGTTCATTGCAGATGATGGACAAGCTGAAGCTGCCCAG
TGCATAGTAACATTAGAGTTGCAAAATCTTGGAGCAGATGGTGGATGCTATGCTTCTCAA
TGCACAGAGACATTGTTGGTGCAACAACTTAGAAGAAATGATGGACAAAATGATGCTGCC
CACTCCACAGGAACACTACCGATACAAGAACTTAGAACAGATGGTGGACAACACGATGCG
GCCCAGTGCACAACAAGTCTACATATGCAAGAGCTTAGAGCAACTGATGTACAAGGTGAT
GCTGCCTGTTTCACACCAACATTACAGAGGCAAGAACATACAGCAGGGAATGAACAAGGT
GACACTGTCCAGTACACAACAACACAACAGGGTCAGGAATCTATTGCAGATGACACACGA
GGTGATTTTACTCACTGCACAACAGCACTGCAATGGCAAGGATCTCATAAAGCTCAGTGC
ACAACAACATTACTAAGGCAGGAGTTTCTAGCAGCAGGTGATAGAATGCAAGATGCTGCA
CTGTTGAGAAATTCAGCTGAAGCTACCACATCCTTGACAAGTACACAACAAGGGAGACAC
ATGAGAACTGAATTATTCAATGTGTCAACTGCAACACCATTTCCCCGGCAATTTTGGAAA
GCTGGAGAGAAAGCTGGAGACTATGGATTAGCTTCTCAAGCTGATCTCAACAATGACCAC
AACCGCTTACAGATTCACCCCAAGTTTCTTCATTCTAATGCTACTTCACATAAATGGCCA
TTCGGTGCTATTGCAGAACTGCTCGACAACGCTATTGATGAGGTGAGCAGTGGGGCAACC
TTTGTGAAAATTGATAAGATGAAGCATTCTCCTAAGGGGGATTATTCATTGGTAATAGAA
GATAATGGCGGCGGCATGAGTCCAAAATCTCTACGACAATGTATGAGCTTTGGATTTTCC
CAGAAAAGCACAACTTCATCCATCGGGCAATATGGAAATGGCTTCAAAACTAGCACGATG
AGGCTTGGGGCAGATGCTATTGTATTCACATGCACTAAAGATGATAGGAGATTGACACGA
AGTATCGGGTTGCTGTCTTACACATTCCTTATGAGAAGTAACTGCAATGACATATTTGTA
CCAGTGGTTGATTATGAATTGGATGCCTTGTCTTCAACTTTCAAGAGGAAAATGAACTGC
GGTGAAAAACATTTTTTATCTAATCTTTTCACTATTTTGAAGTGGTCTCCATTTTCGACA
GAAGATGAATTATTGAATCAATTCAGCAATATGGAGTGCCATGGCACAAAAATCATTGTA
TTCAACTTGTGGTTGAATGATGCATTGGAAATGGAGCTTGACTTTATAACTGATAAAGAG
GATATTTTGGTCTCAGGAGCACCGGAAATACGAGCAGGGCGGAATACAGTGGAAAGCTTG
ACACAGATGCATGTAGCAAACCGTTTCCGATATTCGCTTCGGGTGTATGCATCTATACTA
TACCTACATGTACCTGAAAACTTTCAAATCATCTTGTGTGGACGAGCTGTTGAACCACAT
TATGTTGTCAATGATCTCATATACCGTGAATGTATCATATATCGACCACATGTTCAAGTA
ACCACAGAGGTTGATGTCATTACTACAATTGGCTACTTAAAAGGTGCTCCACGACTTGAT
ATCTATGGATTTAGTGTCTACCATAAGAACCGTCTTATACTGGTTGGTCTCAGTGAGAGC
GAGAAGAGGAAGTTCTGGGAAGACTTAGATGGCATGGTCAGAGCAGTACCCACCAATGAG
AAGCTTTTCATAAGAGGAGATCTCAATGGTCATGTAGGTTCAACAAATGCAGGTTATGAG
CTGGCTCATGGAGGTTTTGAGTATGGTAGTAGAAATCAAGGAGAGGGTATTTTGGACTTT
GCTATAGCCTACAACCTAGTGATAGCCAACACTTTCTTCAAAAAAGAGATTCTCATTTGG
TGA

Peptide Sequence

PEP ID

Zm00001d045978_P009
PEP Infomation

pep chromosome:B73_RefGen_v4:9:51376996:51394263:-1 gene:Zm00001d045978 transcript:Zm00001d045978_T009 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein MICRORCHIDIA 6
Sequence

MLVDIVDLSSDDDEVAVTEEHSVDGKGVYAKANFFDLTIDDGILEGEHIAYEQEQGDSAQ
GTSFYKQEFIADDGQAEAAQCIVTLELQNLGADGGCYASQCTETLLVQQLRRNDGQNDAA
HSTGTLPIQELRTDGGQHDAAQCTTSLHMQELRATDVQGDAACFTPTLQRQEHTAGNEQG
DTVQYTTTQQGQESIADDTRGDFTHCTTALQWQGSHKAQCTTTLLRQEFLAAGDRMQDAA
LLRNSAEATTSLTSTQQGRHMRTELFNVSTATPFPRQFWKAGEKAGDYGLASQADLNNDH
NRLQIHPKFLHSNATSHKWPFGAIAELLDNAIDEVSSGATFVKIDKMKHSPKGDYSLVIE
DNGGGMSPKSLRQCMSFGFSQKSTTSSIGQYGNGFKTSTMRLGADAIVFTCTKDDRRLTR
SIGLLSYTFLMRSNCNDIFVPVVDYELDALSSTFKRKMNCGEKHFLSNLFTILKWSPFST
EDELLNQFSNMECHGTKIIVFNLWLNDALEMELDFITDKEDILVSGAPEIRAGRNTVESL
TQMHVANRFRYSLRVYASILYLHVPENFQIILCGRAVEPHYVVNDLIYRECIIYRPHVQV
TTEVDVITTIGYLKGAPRLDIYGFSVYHKNRLILVGLSESEKRKFWEDLDGMVRAVPTNE
KLFIRGDLNGHVGSTNAGYELAHGGFEYGSRNQGEGILDFAIAYNLVIANTFFKKEILIW

Transcript Sequence

Transcript ID

Zm00001d045978_T009
Transcript Infomation

cdna chromosome:B73_RefGen_v4:9:51376996:51394263:-1 gene:Zm00001d045978 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein MICRORCHIDIA 6
Sequence

GCCCATCAACCACGCAATATGGGATTTCCACAGCAAACAAAGCAAACTTTCCAGTTTCCC
TTGATTCTCTCTCTTCGAAAACTAAAAGCAAACTTTCCGGTTTCCCTTGATTTTCTCTCT
TCGAAAACTAAAGAGCATCGAAACTGAAACATCAGAGCAAAACCCCCTTCTCCCCACTCC
CCAGCAAGTCTCTACCACCATCTCTTCTGCTACTGCAACTGAGAACCCCAGCAACTGAAA
ACCCCATTCTCCGCGGAGCAGCCCCATTGTAGATTAAGCAATGCTAGTAGACATTGTTGA
TCTTTCCAGTGATGATGACGAGGTGGCTGTTACAGAAGAACACAGTGTTGATGGAAAAGG
TGTTTATGCGAAGGCAAATTTTTTTGACTTAACTATTGACGATGGCATTCTTGAAGGAGA
GCATATTGCTTACGAACAAGAACAAGGAGATTCTGCTCAGGGCACATCATTTTATAAACA
AGAGTTCATTGCAGATGATGGACAAGCTGAAGCTGCCCAGTGCATAGTAACATTAGAGTT
GCAAAATCTTGGAGCAGATGGTGGATGCTATGCTTCTCAATGCACAGAGACATTGTTGGT
GCAACAACTTAGAAGAAATGATGGACAAAATGATGCTGCCCACTCCACAGGAACACTACC
GATACAAGAACTTAGAACAGATGGTGGACAACACGATGCGGCCCAGTGCACAACAAGTCT
ACATATGCAAGAGCTTAGAGCAACTGATGTACAAGGTGATGCTGCCTGTTTCACACCAAC
ATTACAGAGGCAAGAACATACAGCAGGGAATGAACAAGGTGACACTGTCCAGTACACAAC
AACACAACAGGGTCAGGAATCTATTGCAGATGACACACGAGGTGATTTTACTCACTGCAC
AACAGCACTGCAATGGCAAGGATCTCATAAAGCTCAGTGCACAACAACATTACTAAGGCA
GGAGTTTCTAGCAGCAGGTGATAGAATGCAAGATGCTGCACTGTTGAGAAATTCAGCTGA
AGCTACCACATCCTTGACAAGTACACAACAAGGGAGACACATGAGAACTGAATTATTCAA
TGTGTCAACTGCAACACCATTTCCCCGGCAATTTTGGAAAGCTGGAGAGAAAGCTGGAGA
CTATGGATTAGCTTCTCAAGCTGATCTCAACAATGACCACAACCGCTTACAGATTCACCC
CAAGTTTCTTCATTCTAATGCTACTTCACATAAATGGCCATTCGGTGCTATTGCAGAACT
GCTCGACAACGCTATTGATGAGGTGAGCAGTGGGGCAACCTTTGTGAAAATTGATAAGAT
GAAGCATTCTCCTAAGGGGGATTATTCATTGGTAATAGAAGATAATGGCGGCGGCATGAG
TCCAAAATCTCTACGACAATGTATGAGCTTTGGATTTTCCCAGAAAAGCACAACTTCATC
CATCGGGCAATATGGAAATGGCTTCAAAACTAGCACGATGAGGCTTGGGGCAGATGCTAT
TGTATTCACATGCACTAAAGATGATAGGAGATTGACACGAAGTATCGGGTTGCTGTCTTA
CACATTCCTTATGAGAAGTAACTGCAATGACATATTTGTACCAGTGGTTGATTATGAATT
GGATGCCTTGTCTTCAACTTTCAAGAGGAAAATGAACTGCGGTGAAAAACATTTTTTATC
TAATCTTTTCACTATTTTGAAGTGGTCTCCATTTTCGACAGAAGATGAATTATTGAATCA
ATTCAGCAATATGGAGTGCCATGGCACAAAAATCATTGTATTCAACTTGTGGTTGAATGA
TGCATTGGAAATGGAGCTTGACTTTATAACTGATAAAGAGGATATTTTGGTCTCAGGAGC
ACCGGAAATACGAGCAGGGCGGAATACAGTGGAAAGCTTGACACAGATGCATGTAGCAAA
CCGTTTCCGATATTCGCTTCGGGTGTATGCATCTATACTATACCTACATGTACCTGAAAA
CTTTCAAATCATCTTGTGTGGACGAGCTGTTGAACCACATTATGTTGTCAATGATCTCAT
ATACCGTGAATGTATCATATATCGACCACATGTTCAAGTAACCACAGAGGTTGATGTCAT
TACTACAATTGGCTACTTAAAAGGTGCTCCACGACTTGATATCTATGGATTTAGTGTCTA
CCATAAGAACCGTCTTATACTGGTTGGTCTCAGTGAGAGCGAGAAGAGGAAGTTCTGGGA
AGACTTAGATGGCATGGTCAGAGCAGTACCCACCAATGAGAAGCTTTTCATAAGAGGAGA
TCTCAATGGTCATGTAGGTTCAACAAATGCAGGTTATGAGCTGGCTCATGGAGGTTTTGA
GTATGGTAGTAGAAATCAAGGAGAGGGTATTTTGGACTTTGCTATAGCCTACAACCTAGT
GATAGCCAACACTTTCTTCAAAAAAGAGATTCTCATTTGGTGA