Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d045938_T005
CDS Infomation

cds chromosome:B73_RefGen_v4:9:47945117:47971767:-1 gene:Zm00001d045938 gene_biotype:protein_coding transcript_biotype:protein_coding description:Expressed protein; protein
Sequence

ATGGCCGTCGGCCTCTACTCTCTCGGCCTCTCTCCGCCGCCGCGGCTTGATACCATCCTC
TTCCCACAGCTGCGGCCTCACCTACGCCGCCGCGTGCCCGCTCGGGTTGCTGCAGCCGGC
ACCAGCTGGTCTCCCGCCGCCGGTGACTCCGAAGACGGGGTCGGCGGCTGGTGGTTTCCC
GAGTACGAGAAATCGATGAAACAGGCGAGGGGGAGGATTGGGTTTAAGAGAGCTGTCGTG
GTTGGGTTGGGAGCTTCTGCGGCGATCGCCTTGGCTGGGCTGGCGTGGCGCTTCCCATCT
TCCCAGAAGCGTATACAGCAACTCATTGTTGCTCCATTACACTATGTTCAAGAGAAATTG
CCAACAATAGAGTCAACAGAGACAACCAAGGAGGATGCAAGTGACAGGGAATCTGATGAA
ATTGAAGTTTCTAGTGCAACGCATGATAAGAAGGCTGAAGCAATAACTGATGATTCAAGG
CAAAACTACAGAACAACAATTGCCAGCCCTTTTCCATTTGGAGTTCCTACAGATCCTGTG
CATGAGGAGGCTTTATCTGTATTGAAGAAACTACAGATAATTGAGAAAGATGTTAGCTCC
AGTGATTTTTGTACACGGAAGGAATTTGCAAGATGGTTTGTTAAGTTGTGCTCAAAGTTT
GAGAGGAAAAAGATGCAAAGAATTGTTCCTAATAAATTAACTTCTGGCACAGTCCAATGT
GCCTTTGATGATGTAAATATAGACCACCCAGACTTCCTGTATATCCAATCTTTAGGAGAA
TCTGGTATAATATCCAGCAAGTTGTCAAACTCCTTGGAAACATTAACAACTGGCTCTCCT
TCCCAGGGAAATTCCTTGTTCCTACCTGATAGTTACCTCTCTCGTTTCGATCTTGTCAAC
TGGAAAGTGCTTGTGGAGCATCCATGTGCATTGGAAATAGACCAAAAGATGCTGAGTCAA
AATGTTTGCATTTTGGATCTGCGTGCTTGCCCAGATGTGTCTCCATCCATGCTCATAGAG
CTAATGGCTGGTGAAAACAGCATCATCAGCAGAGTTTTTGGAAATACTAGGCGCCTTCAA
CCGCACAAACCTGTAACTAAAGCGCAAGCAGCTGCTGCGCTGACCAGTGGTCGAATGAAG
GAAGCAATTCAGGAAGAGTTAAATAGACTTGAAGCAGATAACCAAGCCCGTCTTTCTGTT
ATAGCTGAAATAACAGAAGAATTAATTAATAGGGGAGATATACAACAACAATGGGAGGAA
AAGATGAAAACGGAGCAAGAACGGGCTCTTGAAGTTGACAATAATCTTCAACATGTGTTG
GATGAGCTTGCAAATGAGAGGGCAGACAGAGAAGAGGAACTAGCAGTCTTGTTGAAAGAA
CGAGCAGCTTTAGAACGCAAGAACCAGGAACTCATAAATTTAAGGTTAGAAGTTGATGGC
ATGTACGATAGATTGGCAACTGAGAATGAAGAGGTCATGGCTGATCAGCAAACTTTGGAA
AACCAGTTGTCTGACATGACCAGTAAGCATCAAGCTGTCAATGAAGCTAAATCATATCTT
GAAGCTGAGAAGGAAGCTCTTACAATGCTAAGAACTTGGGTGGAAGATGAAGCAGCACAT
GTCCATGAACGAGCTGAGACACTTGAGAAGGCTTTGAGAAGATGGCGAATCCCAGAAGAT
TGA

Peptide Sequence

PEP ID

Zm00001d045938_P005
PEP Infomation

pep chromosome:B73_RefGen_v4:9:47945117:47971767:-1 gene:Zm00001d045938 transcript:Zm00001d045938_T005 gene_biotype:protein_coding transcript_biotype:protein_coding description:Expressed protein; protein
Sequence

MAVGLYSLGLSPPPRLDTILFPQLRPHLRRRVPARVAAAGTSWSPAAGDSEDGVGGWWFP
EYEKSMKQARGRIGFKRAVVVGLGASAAIALAGLAWRFPSSQKRIQQLIVAPLHYVQEKL
PTIESTETTKEDASDRESDEIEVSSATHDKKAEAITDDSRQNYRTTIASPFPFGVPTDPV
HEEALSVLKKLQIIEKDVSSSDFCTRKEFARWFVKLCSKFERKKMQRIVPNKLTSGTVQC
AFDDVNIDHPDFLYIQSLGESGIISSKLSNSLETLTTGSPSQGNSLFLPDSYLSRFDLVN
WKVLVEHPCALEIDQKMLSQNVCILDLRACPDVSPSMLIELMAGENSIISRVFGNTRRLQ
PHKPVTKAQAAAALTSGRMKEAIQEELNRLEADNQARLSVIAEITEELINRGDIQQQWEE
KMKTEQERALEVDNNLQHVLDELANERADREEELAVLLKERAALERKNQELINLRLEVDG
MYDRLATENEEVMADQQTLENQLSDMTSKHQAVNEAKSYLEAEKEALTMLRTWVEDEAAH
VHERAETLEKALRRWRIPED

Transcript Sequence

Transcript ID

Zm00001d045938_T005
Transcript Infomation

cdna chromosome:B73_RefGen_v4:9:47945117:47971767:-1 gene:Zm00001d045938 gene_biotype:protein_coding transcript_biotype:protein_coding description:Expressed protein; protein
Sequence

GTCGTATATGATACACTCGACCCGAAATGGACACTTGAATGAAACCCGATTCACAAAACC
CTAGCGACCTCGATTCCTCACCAGCATGGCCGTCGGCCTCTACTCTCTCGGCCTCTCTCC
GCCGCCGCGGCTTGATACCATCCTCTTCCCACAGCTGCGGCCTCACCTACGCCGCCGCGT
GCCCGCTCGGGTTGCTGCAGCCGGCACCAGCTGGTCTCCCGCCGCCGGTGACTCCGAAGA
CGGGGTCGGCGGCTGGTGGTTTCCCGAGTACGAGAAATCGATGAAACAGGCGAGGGGGAG
GATTGGGTTTAAGAGAGCTGTCGTGGTTGGGTTGGGAGCTTCTGCGGCGATCGCCTTGGC
TGGGCTGGCGTGGCGCTTCCCATCTTCCCAGAAGCGTATACAGCAACTCATTGTTGCTCC
ATTACACTATGTTCAAGAGAAATTGCCAACAATAGAGTCAACAGAGACAACCAAGGAGGA
TGCAAGTGACAGGGAATCTGATGAAATTGAAGTTTCTAGTGCAACGCATGATAAGAAGGC
TGAAGCAATAACTGATGATTCAAGGCAAAACTACAGAACAACAATTGCCAGCCCTTTTCC
ATTTGGAGTTCCTACAGATCCTGTGCATGAGGAGGCTTTATCTGTATTGAAGAAACTACA
GATAATTGAGAAAGATGTTAGCTCCAGTGATTTTTGTACACGGAAGGAATTTGCAAGATG
GTTTGTTAAGTTGTGCTCAAAGTTTGAGAGGAAAAAGATGCAAAGAATTGTTCCTAATAA
ATTAACTTCTGGCACAGTCCAATGTGCCTTTGATGATGTAAATATAGACCACCCAGACTT
CCTGTATATCCAATCTTTAGGAGAATCTGGTATAATATCCAGCAAGTTGTCAAACTCCTT
GGAAACATTAACAACTGGCTCTCCTTCCCAGGGAAATTCCTTGTTCCTACCTGATAGTTA
CCTCTCTCGTTTCGATCTTGTCAACTGGAAAGTGCTTGTGGAGCATCCATGTGCATTGGA
AATAGACCAAAAGATGCTGAGTCAAAATGTTTGCATTTTGGATCTGCGTGCTTGCCCAGA
TGTGTCTCCATCCATGCTCATAGAGCTAATGGCTGGTGAAAACAGCATCATCAGCAGAGT
TTTTGGAAATACTAGGCGCCTTCAACCGCACAAACCTGTAACTAAAGCGCAAGCAGCTGC
TGCGCTGACCAGTGGTCGAATGAAGGAAGCAATTCAGGAAGAGTTAAATAGACTTGAAGC
AGATAACCAAGCCCGTCTTTCTGTTATAGCTGAAATAACAGAAGAATTAATTAATAGGGG
AGATATACAACAACAATGGGAGGAAAAGATGAAAACGGAGCAAGAACGGGCTCTTGAAGT
TGACAATAATCTTCAACATGTGTTGGATGAGCTTGCAAATGAGAGGGCAGACAGAGAAGA
GGAACTAGCAGTCTTGTTGAAAGAACGAGCAGCTTTAGAACGCAAGAACCAGGAACTCAT
AAATTTAAGGTTAGAAGTTGATGGCATGTACGATAGATTGGCAACTGAGAATGAAGAGGT
CATGGCTGATCAGCAAACTTTGGAAAACCAGTTGTCTGACATGACCAGTAAGCATCAAGC
TGTCAATGAAGCTAAATCATATCTTGAAGCTGAGAAGGAAGCTCTTACAATGCTAAGAAC
TTGGGTGGAAGATGAAGCAGCACATGTCCATGAACGAGCTGAGACACTTGAGAAGGCTTT
GAGAAGATGGCGAATCCCAGAAGATTGATCCCTCCAAACTAACTGTGCTTTGCATTGGTA
AAGTTTTGTTCAAAGTTTTTGGAGCTCATTGGCTCCAGAGCATCTACCATCTGAATAATT
CTCAATAGAATGGAATGGTTGTGCCTTAATGTTCCTTGCGATGGTTTATTTTCCTTTAGT
ACATCTTGACATCTTGTCCACATTCTGAGGG