Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d045883_T002
CDS Infomation

cds chromosome:B73_RefGen_v4:9:45473833:45477106:1 gene:Zm00001d045883 gene_biotype:protein_coding transcript_biotype:protein_coding description:Sodium/hydrogen exchanger

Sequence

ATGGCGGCGGCGGCGTGGTGGGAGACGCTGGTGGTGGCAGCGGCGGCGGATGGAACCGGT
GGGAGCAGCACCACGGTGGTGTCCATCTGCATGTTCACGACGGTGCTGTGCCTGTGCCTC
GTCGCGGGCCACCTCCTCGAGGAGAACAAGTGGGTCAATGAGTCCATCACCGCCCTCGTC
ATCGGGTGCATCATAGGAGTGATCGTATTTCTGCTGACCAAGGGGAAGCACTCACACATC
CTGCGGTTCGATGAGCAGCTCTTCTTCATCTACGTGCTTCCACCGATAATCTTCAACGCC
GGGTTTCAGGTCAAGAAAAAGCAGTTCTTCCACAACTTCATGACCATCATGTCCTTCGGC
GTGTTCGGCGTTTTCATCTCAGGTGCAATAGTTTCGGCAGGCTGCTATTGGCTCTTCCCG
AAAGTCGGGTTTGGAGAACTTGGTGCGGTAGATTATTTAGCACTGGGAGCCATATTTTCT
TCAACAGACACCGTGTGCACGTTGCAGGTCATAAACCAAGATGAGACACCAAGGCTGTAC
AGCCTGGTGTTTGGAGAAGGAGTTGTCAACGATGCAACGGCGGTCGTTCTTTTCAATGCC
ATCAAGGATCTCGATATCAGTCGGCTCAAGGGTGGGGTTGTGCTAAAAGTGATATTTGAC
TTCCTCTATCTCTTTGCAACCAGCACTGTCCTCGGAATCTCAATCGGTCTAGTAACTGCA
TATGTTCTCAAAGCTCTGTATTTTGGTAGGCATTCGACCGATAGAGAGGTTGCCTTGATG
GCTCTCATGGCCTATCTATCGTATATGCTGGCAGAGTTGCTAGAGCTGAGTGGAATTTTG
ACCGTGTTCTTTTGCGGCATTGTCATGTCCCATTATGCATGGCACAACGTGACAGAGAGC
TCAAGGATTACAACAAAGCATATATTTGCAACATTATCTTTCATTGCCGAGACATTCATC
TTCCTTTACGTCGGTATGGATGCTCTTGACATTGATAAGTGGAGGACATCAAAGGAAAGC
TTCAAGACATCCATCGGTATCTTTGGCATCCTCATATTGCTCATACTACTGGGACGAGTG
GCATTTGTTTTCCCTATATCCATTTTGTCAAATATCATGAGTGGAAGTTCTGAAAGAACC
CCGATCACATTCAAGCACCAGGTTGTTATTTGGTGGGCTGGGCTCATGAGAGGTGCTGTT
TCCATTGCACTAGCATACAATCAGTTCACATTTTCAGGTGTAACATCGGATCCAGTTCAT
GCCACCATCATCACTAGCACAATAATCGTCGTCTTCTTCACCACTCTGGTGTTTGGCTTC
TTGACCAGGCCCCTGATCAGTGGCATGCTCCCGCACCAGTCGAGGGCGCTGTCCAGAGGC
CATAGCACAGGCAGCAACTCCCCGAAGGATGACTTCACCCTGCCGTTCCTGTCGGGCGAT
GAAGGCGCGTCAGGCAGCGGTATCGTCTTGGAGCAAGCCAAGAGGAGCTTGTCTATGATG
CTGGAGAGGCCCGTCCACACGGTTCACATCTACTGGAGGAAGTTCGATGACAGGTTCATG
AGGCCAATCTTTGGTGGACCGCGGTCGCACTGA

Peptide Sequence

PEP ID

Zm00001d045883_P002
PEP Infomation

pep chromosome:B73_RefGen_v4:9:45473833:45477106:1 gene:Zm00001d045883 transcript:Zm00001d045883_T002 gene_biotype:protein_coding transcript_biotype:protein_coding description:Sodium/hydrogen exchanger

Sequence

MAAAAWWETLVVAAAADGTGGSSTTVVSICMFTTVLCLCLVAGHLLEENKWVNESITALV
IGCIIGVIVFLLTKGKHSHILRFDEQLFFIYVLPPIIFNAGFQVKKKQFFHNFMTIMSFG
VFGVFISGAIVSAGCYWLFPKVGFGELGAVDYLALGAIFSSTDTVCTLQVINQDETPRLY
SLVFGEGVVNDATAVVLFNAIKDLDISRLKGGVVLKVIFDFLYLFATSTVLGISIGLVTA
YVLKALYFGRHSTDREVALMALMAYLSYMLAELLELSGILTVFFCGIVMSHYAWHNVTES
SRITTKHIFATLSFIAETFIFLYVGMDALDIDKWRTSKESFKTSIGIFGILILLILLGRV
AFVFPISILSNIMSGSSERTPITFKHQVVIWWAGLMRGAVSIALAYNQFTFSGVTSDPVH
ATIITSTIIVVFFTTLVFGFLTRPLISGMLPHQSRALSRGHSTGSNSPKDDFTLPFLSGD
EGASGSGIVLEQAKRSLSMMLERPVHTVHIYWRKFDDRFMRPIFGGPRSH

Transcript Sequence

Transcript ID

Zm00001d045883_T002
Transcript Infomation

cdna chromosome:B73_RefGen_v4:9:45473833:45477106:1 gene:Zm00001d045883 gene_biotype:protein_coding transcript_biotype:protein_coding description:Sodium/hydrogen exchanger

Sequence

TGGCTACGCGCCAAAATCGTCCCTCACACGGCGGCAGCAAAAACAGAGGACACGGGTGCG
AGAGACATGCGACAGAGAATCCATGGCGGCGGCGGCGTGGTGGGAGACGCTGGTGGTGGC
AGCGGCGGCGGATGGAACCGGTGGGAGCAGCACCACGGTGGTGTCCATCTGCATGTTCAC
GACGGTGCTGTGCCTGTGCCTCGTCGCGGGCCACCTCCTCGAGGAGAACAAGTGGGTCAA
TGAGTCCATCACCGCCCTCGTCATCGGGTGCATCATAGGAGTGATCGTATTTCTGCTGAC
CAAGGGGAAGCACTCACACATCCTGCGGTTCGATGAGCAGCTCTTCTTCATCTACGTGCT
TCCACCGATAATCTTCAACGCCGGGTTTCAGGTCAAGAAAAAGCAGTTCTTCCACAACTT
CATGACCATCATGTCCTTCGGCGTGTTCGGCGTTTTCATCTCAGGTGCAATAGTTTCGGC
AGGCTGCTATTGGCTCTTCCCGAAAGTCGGGTTTGGAGAACTTGGTGCGGTAGATTATTT
AGCACTGGGAGCCATATTTTCTTCAACAGACACCGTGTGCACGTTGCAGGTCATAAACCA
AGATGAGACACCAAGGCTGTACAGCCTGGTGTTTGGAGAAGGAGTTGTCAACGATGCAAC
GGCGGTCGTTCTTTTCAATGCCATCAAGGATCTCGATATCAGTCGGCTCAAGGGTGGGGT
TGTGCTAAAAGTGATATTTGACTTCCTCTATCTCTTTGCAACCAGCACTGTCCTCGGAAT
CTCAATCGGTCTAGTAACTGCATATGTTCTCAAAGCTCTGTATTTTGGTAGGCATTCGAC
CGATAGAGAGGTTGCCTTGATGGCTCTCATGGCCTATCTATCGTATATGCTGGCAGAGTT
GCTAGAGCTGAGTGGAATTTTGACCGTGTTCTTTTGCGGCATTGTCATGTCCCATTATGC
ATGGCACAACGTGACAGAGAGCTCAAGGATTACAACAAAGCATATATTTGCAACATTATC
TTTCATTGCCGAGACATTCATCTTCCTTTACGTCGGTATGGATGCTCTTGACATTGATAA
GTGGAGGACATCAAAGGAAAGCTTCAAGACATCCATCGGTATCTTTGGCATCCTCATATT
GCTCATACTACTGGGACGAGTGGCATTTGTTTTCCCTATATCCATTTTGTCAAATATCAT
GAGTGGAAGTTCTGAAAGAACCCCGATCACATTCAAGCACCAGGTTGTTATTTGGTGGGC
TGGGCTCATGAGAGGTGCTGTTTCCATTGCACTAGCATACAATCAGTTCACATTTTCAGG
TGTAACATCGGATCCAGTTCATGCCACCATCATCACTAGCACAATAATCGTCGTCTTCTT
CACCACTCTGGTGTTTGGCTTCTTGACCAGGCCCCTGATCAGTGGCATGCTCCCGCACCA
GTCGAGGGCGCTGTCCAGAGGCCATAGCACAGGCAGCAACTCCCCGAAGGATGACTTCAC
CCTGCCGTTCCTGTCGGGCGATGAAGGCGCGTCAGGCAGCGGTATCGTCTTGGAGCAAGC
CAAGAGGAGCTTGTCTATGATGCTGGAGAGGCCCGTCCACACGGTTCACATCTACTGGAG
GAAGTTCGATGACAGGTTCATGAGGCCAATCTTTGGTGGACCGCGGTCGCACTGACTGCA
GGTGCATATAAGAGGAGTTAGTTTCTCTGAATTCTGTCAGCATAGTTCGCCCATGGCACT
GTAAAGTTGATAACACTGAATGCTTTCAAGCAACTCTTTATTATTTTTAGTACTTATATT
ACATCACTGCAATCTTACAAACATAATTTTTTTTTAAAAAAAAAATCAATCAGAGCGAAA
ACAAATGGAAGCAATCTGAATGCTTCTTATTGT