Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d045598_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:9:28060153:28063330:1 gene:Zm00001d045598 gene_biotype:protein_coding transcript_biotype:protein_coding description:OSJNBa0089E12.13 protein; protein
Sequence

ATGGACAGGTCGGCGGAGGTACTTGTGCTTGTCAGCTTCTTTCTTCAGCTGTTTCTGTTC
TTCACTGGTGGGCTTCGGCAACGCACAAGAAACCCTTTGCTTCGATGCAGCATATGGGTA
GCGTATGCGGGAGCTGACCTGGTAGCAATCTACGCTCTCGGTGTCCTGTCACGAGATGCG
AATGCGATGGAAAACGGAACAGCGTCCCTTTGGGCACCTTTCCTCCTCATCCATCTCGGT
GGCCAGGACACCATCACCGCCTTCTCCATGGAGGACAGCAGCCTGTGGAAGCGGCATGTG
CTGAACCTGTTAGTCCAGGTGACCCTAGCGCTGTACGCCTTCTTCTTCTTCTGGAAGCCC
AGCAGCACGCAGGTTCTTTTCCCCGGCGTCCTGCTGTTTGCCGCTGGGATCATCAAGTAC
GGAGAGAGGACAGCAGCCCTGATGCAGGGGGACCTGAGCAGCAGCATGGTGGTGGAGGAG
CTGGTCACCTCCGACAACAGCAGATCAGAGCAGCAGCAGCAGCAGAAACCAGCACCCGAT
CTCGCGAACATCTGTGCTGACGCGTTGCGTTCGGCGCCGGGGATCCGGATGCTGTTCGCA
GGCCACACGACGGCAAAAGTGGCCGGCGATCTTAGGAGCATCGTCGACTCCTATCCCTCG
CCCTCCTCGTTTGATAGGCATACTTCCCTGTTCACGTTGATGGATGTGGAGCTTGCCATG
GTGTACAGTGATCTCTACACTAAGGCCGCAGTGCTCCGTACGAGGGCAGGCATCGTATTC
CGGTGCATCTCGCTGGCGTGTACCGTTGCCGCTCTCACCCTCTTCTTCTTCTTCTCGTCT
TCGTCCTCCTCATCCTACAGCAGCAGCGATGGTGCCATCGTCATCACCTACACGCTGTTC
ATAGGAGGGCTTGCCGTGGACGTCTGCTCCCTGCTTAAGGTGTACATGGCGTCACCTTGG
GCATGGGCGTGGGCGTGGCTGCGTCACCCTCGGACTCGGGCTGCTTCTCGCGTCTCTCGG
TGCCTTCTCTCCTGGTGGGACATGACAAGCAGGCCGCTGTGGTCAAACACCATGGGGCAG
TACAGGTTCGTATACTACGACGACGAATCCAGGTCGTGGTCGCCGCCGCCGTCTAGGCTC
TCCGAGGTAGTGATGTGCATCGTGGGGAAGCTGGTCGGCGTCGGGAGGGACAAGGGGGGT
TCGTTCTGTCTCAACAGGCTGCTGAAGACCAAGCAGGTGGTGGTGGACGACAATGTCACC
CTGTGCCTGGTGAAGGAGATAGACGACATAGCCACCGCCGCTCGCCAGCCGCGCGATGAG
CAGAAGCAGCAGCAGTGGTGGTGCCTCGGGCAGCTGCTACTGGAGGCAACGCAGCGGCGG
CAGGAGCTGGCCAACGATTTTGTCCGCCTTGTATCCTGGCTGCACGCATGCACGGAGACC
CTCCTGTGTCAGGCTGCGGATGCGGCGGCGGCCAACAAGGAAATCAGCATCGCCACCGGC
ACCGCAGGCGCCGCCGCTTCGGCCGACGTCTGCCGGAAGCTATCCAGGTACATGATGTAC
CTGGTGGCTGCAAACCCAGGAGGTGCTGCTTCCTCGCTTTTGCAGGAAGGCAACCCTGAA
GCGGAGTTTCGGCGCTGTGATGGGTACCGTAGCTGTCGCACGGTTGACGAGCAGCGGGAT
GCTTGCATGCGCCTTCTGTGTGACGGCGGCGGCCCTGCAGCAGCGGAGGCCATGTCGACG
ACGCTGTGGCCCTGCTCGGCGACGTGGGATGAGACACTGGAGGAGCTGAAGCACATGTGG
GCAAGGCTGCTCGTGTACGCCGCCTCCAGGTCCAGGCCCGAGGCGCACGCGGCGGCGCTG
GCGAGAGGCGGGGAGCTCTTCACCTTCGTGTGGCTTCTCTTGTCCCACCACGGGCTCGGT
GCTTCCTCCACTGCCTTCCGGGTGGAGGTAGATCTGGTGAAAGCTCATCGCAAACATGTC
GACGACGACTCATCAAAGAGGGAAAGAAGATACTACGTCTTCGACAATCTCCCAGTGCAC
ATGCAGATGGTTAACCGCCCACAACTGCAGAGCAAGCTAGCTTCGTCAACACCCACAGGA
TCCGAGTCCCACTATTTGGCTGACTCCACGGTGGACCCCTAG

Peptide Sequence

PEP ID

Zm00001d045598_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:9:28060153:28063330:1 gene:Zm00001d045598 transcript:Zm00001d045598_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:OSJNBa0089E12.13 protein; protein
Sequence

MDRSAEVLVLVSFFLQLFLFFTGGLRQRTRNPLLRCSIWVAYAGADLVAIYALGVLSRDA
NAMENGTASLWAPFLLIHLGGQDTITAFSMEDSSLWKRHVLNLLVQVTLALYAFFFFWKP
SSTQVLFPGVLLFAAGIIKYGERTAALMQGDLSSSMVVEELVTSDNSRSEQQQQQKPAPD
LANICADALRSAPGIRMLFAGHTTAKVAGDLRSIVDSYPSPSSFDRHTSLFTLMDVELAM
VYSDLYTKAAVLRTRAGIVFRCISLACTVAALTLFFFFSSSSSSSYSSSDGAIVITYTLF
IGGLAVDVCSLLKVYMASPWAWAWAWLRHPRTRAASRVSRCLLSWWDMTSRPLWSNTMGQ
YRFVYYDDESRSWSPPPSRLSEVVMCIVGKLVGVGRDKGGSFCLNRLLKTKQVVVDDNVT
LCLVKEIDDIATAARQPRDEQKQQQWWCLGQLLLEATQRRQELANDFVRLVSWLHACTET
LLCQAADAAAANKEISIATGTAGAAASADVCRKLSRYMMYLVAANPGGAASSLLQEGNPE
AEFRRCDGYRSCRTVDEQRDACMRLLCDGGGPAAAEAMSTTLWPCSATWDETLEELKHMW
ARLLVYAASRSRPEAHAAALARGGELFTFVWLLLSHHGLGASSTAFRVEVDLVKAHRKHV
DDDSSKRERRYYVFDNLPVHMQMVNRPQLQSKLASSTPTGSESHYLADSTVDP

Transcript Sequence

Transcript ID

Zm00001d045598_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:9:28060153:28063330:1 gene:Zm00001d045598 gene_biotype:protein_coding transcript_biotype:protein_coding description:OSJNBa0089E12.13 protein; protein
Sequence

GCGCATAAGCTACACATTATTAAAACATCTAGGCTAGTTTGCGTACACACCGGAAGAACC
TCGGGTACCTACCAACTGTTTTGAAGCTTGCTGGGAAGCTTTGCTATCAAGTACCAGCTG
TTGTCAAGATCAGTGGGTTGTATATATAAGTAATGGACAGGTCGGCGGAGGTACTTGTGC
TTGTCAGCTTCTTTCTTCAGCTGTTTCTGTTCTTCACTGGTGGGCTTCGGCAACGCACAA
GAAACCCTTTGCTTCGATGCAGCATATGGGTAGCGTATGCGGGAGCTGACCTGGTAGCAA
TCTACGCTCTCGGTGTCCTGTCACGAGATGCGAATGCGATGGAAAACGGAACAGCGTCCC
TTTGGGCACCTTTCCTCCTCATCCATCTCGGTGGCCAGGACACCATCACCGCCTTCTCCA
TGGAGGACAGCAGCCTGTGGAAGCGGCATGTGCTGAACCTGTTAGTCCAGGTGACCCTAG
CGCTGTACGCCTTCTTCTTCTTCTGGAAGCCCAGCAGCACGCAGGTTCTTTTCCCCGGCG
TCCTGCTGTTTGCCGCTGGGATCATCAAGTACGGAGAGAGGACAGCAGCCCTGATGCAGG
GGGACCTGAGCAGCAGCATGGTGGTGGAGGAGCTGGTCACCTCCGACAACAGCAGATCAG
AGCAGCAGCAGCAGCAGAAACCAGCACCCGATCTCGCGAACATCTGTGCTGACGCGTTGC
GTTCGGCGCCGGGGATCCGGATGCTGTTCGCAGGCCACACGACGGCAAAAGTGGCCGGCG
ATCTTAGGAGCATCGTCGACTCCTATCCCTCGCCCTCCTCGTTTGATAGGCATACTTCCC
TGTTCACGTTGATGGATGTGGAGCTTGCCATGGTGTACAGTGATCTCTACACTAAGGCCG
CAGTGCTCCGTACGAGGGCAGGCATCGTATTCCGGTGCATCTCGCTGGCGTGTACCGTTG
CCGCTCTCACCCTCTTCTTCTTCTTCTCGTCTTCGTCCTCCTCATCCTACAGCAGCAGCG
ATGGTGCCATCGTCATCACCTACACGCTGTTCATAGGAGGGCTTGCCGTGGACGTCTGCT
CCCTGCTTAAGGTGTACATGGCGTCACCTTGGGCATGGGCGTGGGCGTGGCTGCGTCACC
CTCGGACTCGGGCTGCTTCTCGCGTCTCTCGGTGCCTTCTCTCCTGGTGGGACATGACAA
GCAGGCCGCTGTGGTCAAACACCATGGGGCAGTACAGGTTCGTATACTACGACGACGAAT
CCAGGTCGTGGTCGCCGCCGCCGTCTAGGCTCTCCGAGGTAGTGATGTGCATCGTGGGGA
AGCTGGTCGGCGTCGGGAGGGACAAGGGGGGTTCGTTCTGTCTCAACAGGCTGCTGAAGA
CCAAGCAGGTGGTGGTGGACGACAATGTCACCCTGTGCCTGGTGAAGGAGATAGACGACA
TAGCCACCGCCGCTCGCCAGCCGCGCGATGAGCAGAAGCAGCAGCAGTGGTGGTGCCTCG
GGCAGCTGCTACTGGAGGCAACGCAGCGGCGGCAGGAGCTGGCCAACGATTTTGTCCGCC
TTGTATCCTGGCTGCACGCATGCACGGAGACCCTCCTGTGTCAGGCTGCGGATGCGGCGG
CGGCCAACAAGGAAATCAGCATCGCCACCGGCACCGCAGGCGCCGCCGCTTCGGCCGACG
TCTGCCGGAAGCTATCCAGGTACATGATGTACCTGGTGGCTGCAAACCCAGGAGGTGCTG
CTTCCTCGCTTTTGCAGGAAGGCAACCCTGAAGCGGAGTTTCGGCGCTGTGATGGGTACC
GTAGCTGTCGCACGGTTGACGAGCAGCGGGATGCTTGCATGCGCCTTCTGTGTGACGGCG
GCGGCCCTGCAGCAGCGGAGGCCATGTCGACGACGCTGTGGCCCTGCTCGGCGACGTGGG
ATGAGACACTGGAGGAGCTGAAGCACATGTGGGCAAGGCTGCTCGTGTACGCCGCCTCCA
GGTCCAGGCCCGAGGCGCACGCGGCGGCGCTGGCGAGAGGCGGGGAGCTCTTCACCTTCG
TGTGGCTTCTCTTGTCCCACCACGGGCTCGGTGCTTCCTCCACTGCCTTCCGGGTGGAGG
TAGATCTGGTGAAAGCTCATCGCAAACATGTCGACGACGACTCATCAAAGAGGGAAAGAA
GATACTACGTCTTCGACAATCTCCCAGTGCACATGCAGATGGTTAACCGCCCACAACTGC
AGAGCAAGCTAGCTTCGTCAACACCCACAGGATCCGAGTCCCACTATTTGGCTGACTCCA
CGGTGGACCCCTAGACAATTACTGGAGGAACAAGCTTCAGCTCTTGTGGTTGCTATACAA
TATATTAATTGTTTCCACTTTTACATCTTTTATCAATAAAAATAAAATCATGACGTTATC
GCTGAAAATTGCAATACACATACCTTATTAAATATATAATATATGGAGATTATTGCAATA
GAGAACATATAGCAGTTGATTTCATTGTCTGTTATACTATTATTCATGTTGTTGTGACTG
CTACTACTGTATTAATCTTTTATATATTATGTATTGAATTT