Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d045583_T013
CDS Infomation

cds chromosome:B73_RefGen_v4:9:27329422:27334927:1 gene:Zm00001d045583 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein arginine N-methyltransferase 1.6
Sequence

ATGCCGAGCTGCCTCCTCCCTGGCATCGCGCCACGCCCACCGCCGGCCGCTCTCCGCAGC
CTCCTCCTCCGCCGCAGCAGAATGGCCTCCTCCGGGCCGGCACGCGCCTTCCAGCTCCGC
CTCAACCCACTCACCGGCGACTCCGAGTGGCTCGTCGTCGACGAGGCGGAAACGGAAGCG
GAGGTGGCTGCGCCTGCGCCGACCCACCATAAGCAGCTCCTTGCCGCCACCTCCTACCTC
GACATGCTCAACGACGCCTCCCGCAACCGCGCGTACCGCCTCGCCATTGACGCCACGGTA
ACGGACCCCACCTCTCGCGTCCTCGACATCGGAGCTGGGACCGGGTTGCTGTCCATGATG
GCGGCGCGAGCTTTGGCAGCTGCTGGAGGTGAAGGTAGGGGAAGCGTGTCAGCATGCGAG
TCCTACCTTCCAATGGGCAAACTAACACGGAGGGTACTCAGAGCCAATGGGATGGAAAAT
AAGGTCAAAGTATTTCACAAGCGATCAGATGAGCTCGGAGTTGGAGTCGAGCTTGATTCT
CGACCTGATATATTGGTAAGTGAAATTCTTGATTCTGAGCTGCTGGGTGAGGGTCTCATA
CCTACTCTACAGCATGCGCATGACATGCTATTGGTGAAAAATCCAAAGACAGTTCCATAT
CGAGCTACTACTTATGGAGTGTTGGTTGAGAGCACGTCCTTGTGGAAGATGCATGATCTG
CACAGCAATGAAGCAAATGCTGAAGATGGTGTGAGGCTTATTCCCAGTGGAACACAAATT
GTTCTTTCTGTGAAGTCACAGCAACATGCGATGCAATGTGATGCGCTGGCAGATGAAATA
AGATTGCTGTCAGAACCCTTCAAAGTTTTTGAATTTGACTTTTCGGAACGTCCAGATAGT
CATCGTGAAACAAAGATTGAGATAAAAGCAACAGCTGATGGGCATGCTCATGCTATTGTT
TCATGGTGGGTGCTTCAGTTGGATTCTTCTGGATCAGTCTTTTACTCAACTGCTCCTAGA
TGGGTGAGACAATCCAGTGGTGTCGATTTACCACAATATGCCAATGGCACGAAGGATTGG
TGTGATCATTGGAAGCAGTGTGTTTGGTTTATACAAGGGACAGGGGCTCCTGCAAAGAAA
GATCAAACTCTTTCTTTGAGCGCTAGCCATAATCAAACTAGCATCTCATATCAGTTGAAT
ATAAATGATGAAGGAAGTAGAAGCCCCAAAAGTAATCATCTAACACTGTTACCAGAAAGG
GTAGCACTTTATGGTGATAAAGTTTGGAGATCAGCGTTGATAAGTGTAATCAGGAATTAT
ACGAGCGAAAGATCCTCTCCGATCTGCATTGTGGCTGATGACAGCGTGTTCCTAGCTCTC
ATTGTTTCTTTTCTGTTACCATCTTCAAAAGTCCTCGCTATGTTTCCATGTCTTAGAGAC
AGTGGCCTCAACTATCTTCAAGCTGTTGCAGATGCAAATAATTTATCCATGGACCGGATT
AAAGTGATTGGTAAAAAGGCATCGTCCCTTACTACAAATGACTTAAATCATGAAAAGGTT
AATATGTTAGTGGGGGAACCCTTTTATCATGGAAGTGAAGGGATGCTGCCATGGCAAAAT
CTGCGTTTCTGGAATGAAAGGACTCTGCTTGATCCGTTGCTCTCTGAGGATGCATTCATC
ATGCCTTGTAAGGGAATATTAAGGTTCTGTGCCATGTCACTTCCGGACTTGTGGAGAAGC
CGTCGTAGCCTTAAAGATGTTGAGGGTTTTGACCACTCAGTTGTTAATGATACTTTAGGG
GCCTGTGGTGACCTGCCTGGAGAGCAACAAGGCCCTTGCCTACCTTATTATGTGTGGCAA
TGCGGTTATACCAAGAAATTAAGTGAAGTTTACTCTCTCATGGATTTGAACTTTTCTGAG
CCTATCCACTCTTGTTTTGGTGAAACAAAGGTTGAGTTTGCCCACGATGGAACATGCCAT
GGGTTCGCTGTTTGGATCGACTGGGTACTTGACAAGGAAAATTCCATAGTGATAAGCACC
GGGCCAGAGAGCAGATACTGGAAGCAAGGGGTGCAGCTGCTTAGCACGCCTGTACAAGTG
AACCCAGCGAATTCGGTGATGCACGTGGAGGCGAATTTCGATGCTGACATTGGGGAGCTC
ACGTTTAAATCCACCACGCTCTCATGA

Peptide Sequence

PEP ID

Zm00001d045583_P013
PEP Infomation

pep chromosome:B73_RefGen_v4:9:27329422:27334927:1 gene:Zm00001d045583 transcript:Zm00001d045583_T013 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein arginine N-methyltransferase 1.6
Sequence

MPSCLLPGIAPRPPPAALRSLLLRRSRMASSGPARAFQLRLNPLTGDSEWLVVDEAETEA
EVAAPAPTHHKQLLAATSYLDMLNDASRNRAYRLAIDATVTDPTSRVLDIGAGTGLLSMM
AARALAAAGGEGRGSVSACESYLPMGKLTRRVLRANGMENKVKVFHKRSDELGVGVELDS
RPDILVSEILDSELLGEGLIPTLQHAHDMLLVKNPKTVPYRATTYGVLVESTSLWKMHDL
HSNEANAEDGVRLIPSGTQIVLSVKSQQHAMQCDALADEIRLLSEPFKVFEFDFSERPDS
HRETKIEIKATADGHAHAIVSWWVLQLDSSGSVFYSTAPRWVRQSSGVDLPQYANGTKDW
CDHWKQCVWFIQGTGAPAKKDQTLSLSASHNQTSISYQLNINDEGSRSPKSNHLTLLPER
VALYGDKVWRSALISVIRNYTSERSSPICIVADDSVFLALIVSFLLPSSKVLAMFPCLRD
SGLNYLQAVADANNLSMDRIKVIGKKASSLTTNDLNHEKVNMLVGEPFYHGSEGMLPWQN
LRFWNERTLLDPLLSEDAFIMPCKGILRFCAMSLPDLWRSRRSLKDVEGFDHSVVNDTLG
ACGDLPGEQQGPCLPYYVWQCGYTKKLSEVYSLMDLNFSEPIHSCFGETKVEFAHDGTCH
GFAVWIDWVLDKENSIVISTGPESRYWKQGVQLLSTPVQVNPANSVMHVEANFDADIGEL
TFKSTTLS

Transcript Sequence

Transcript ID

Zm00001d045583_T013
Transcript Infomation

cdna chromosome:B73_RefGen_v4:9:27329422:27334927:1 gene:Zm00001d045583 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein arginine N-methyltransferase 1.6
Sequence

GCCGATGCCGAGCTGCCTCCTCCCTGGCATCGCGCCACGCCCACCGCCGGCCGCTCTCCG
CAGCCTCCTCCTCCGCCGCAGCAGAATGGCCTCCTCCGGGCCGGCACGCGCCTTCCAGCT
CCGCCTCAACCCACTCACCGGCGACTCCGAGTGGCTCGTCGTCGACGAGGCGGAAACGGA
AGCGGAGGTGGCTGCGCCTGCGCCGACCCACCATAAGCAGCTCCTTGCCGCCACCTCCTA
CCTCGACATGCTCAACGACGCCTCCCGCAACCGCGCGTACCGCCTCGCCATTGACGCCAC
GGTAACGGACCCCACCTCTCGCGTCCTCGACATCGGAGCTGGGACCGGGTTGCTGTCCAT
GATGGCGGCGCGAGCTTTGGCAGCTGCTGGAGGTGAAGGTAGGGGAAGCGTGTCAGCATG
CGAGTCCTACCTTCCAATGGGCAAACTAACACGGAGGGTACTCAGAGCCAATGGGATGGA
AAATAAGGTCAAAGTATTTCACAAGCGATCAGATGAGCTCGGAGTTGGAGTCGAGCTTGA
TTCTCGACCTGATATATTGGTAAGTGAAATTCTTGATTCTGAGCTGCTGGGTGAGGGTCT
CATACCTACTCTACAGCATGCGCATGACATGCTATTGGTGAAAAATCCAAAGACAGTTCC
ATATCGAGCTACTACTTATGGAGTGTTGGTTGAGAGCACGTCCTTGTGGAAGATGCATGA
TCTGCACAGCAATGAAGCAAATGCTGAAGATGGTGTGAGGCTTATTCCCAGTGGAACACA
AATTGTTCTTTCTGTGAAGTCACAGCAACATGCGATGCAATGTGATGCGCTGGCAGATGA
AATAAGATTGCTGTCAGAACCCTTCAAAGTTTTTGAATTTGACTTTTCGGAACGTCCAGA
TAGTCATCGTGAAACAAAGATTGAGATAAAAGCAACAGCTGATGGGCATGCTCATGCTAT
TGTTTCATGGTGGGTGCTTCAGTTGGATTCTTCTGGATCAGTCTTTTACTCAACTGCTCC
TAGATGGGTGAGACAATCCAGTGGTGTCGATTTACCACAATATGCCAATGGCACGAAGGA
TTGGTGTGATCATTGGAAGCAGTGTGTTTGGTTTATACAAGGGACAGGGGCTCCTGCAAA
GAAAGATCAAACTCTTTCTTTGAGCGCTAGCCATAATCAAACTAGCATCTCATATCAGTT
GAATATAAATGATGAAGGAAGTAGAAGCCCCAAAAGTAATCATCTAACACTGTTACCAGA
AAGGGTAGCACTTTATGGTGATAAAGTTTGGAGATCAGCGTTGATAAGTGTAATCAGGAA
TTATACGAGCGAAAGATCCTCTCCGATCTGCATTGTGGCTGATGACAGCGTGTTCCTAGC
TCTCATTGTTTCTTTTCTGTTACCATCTTCAAAAGTCCTCGCTATGTTTCCATGTCTTAG
AGACAGTGGCCTCAACTATCTTCAAGCTGTTGCAGATGCAAATAATTTATCCATGGACCG
GATTAAAGTGATTGGTAAAAAGGCATCGTCCCTTACTACAAATGACTTAAATCATGAAAA
GGTTAATATGTTAGTGGGGGAACCCTTTTATCATGGAAGTGAAGGGATGCTGCCATGGCA
AAATCTGCGTTTCTGGAATGAAAGGACTCTGCTTGATCCGTTGCTCTCTGAGGATGCATT
CATCATGCCTTGTAAGGGAATATTAAGGTTCTGTGCCATGTCACTTCCGGACTTGTGGAG
AAGCCGTCGTAGCCTTAAAGATGTTGAGGGTTTTGACCACTCAGTTGTTAATGATACTTT
AGGGGCCTGTGGTGACCTGCCTGGAGAGCAACAAGGCCCTTGCCTACCTTATTATGTGTG
GCAATGCGGTTATACCAAGAAATTAAGTGAAGTTTACTCTCTCATGGATTTGAACTTTTC
TGAGCCTATCCACTCTTGTTTTGGTGAAACAAAGGTTGAGTTTGCCCACGATGGAACATG
CCATGGGTTCGCTGTTTGGATCGACTGGGTACTTGACAAGGAAAATTCCATAGTGATAAG
CACCGGGCCAGAGAGCAGATACTGGAAGCAAGGGGTGCAGCTGCTTAGCACGCCTGTACA
AGTGAACCCAGCGAATTCGGTGATGCACGTGGAGGCGAATTTCGATGCTGACATTGGGGA
GCTCACGTTTAAATCCACCACGCTCTCATGATGCCAACTGTAATGTGTGGACAACCAAGC
CTCATGCGTGTGTTGTTCTTAAAAGTTAGCATTTGTCGCTGCGTTTTGTTCGTCGGAGCT
CCTGATGTGAGTCAAGCACTCAAGCTCATGATTACGTGTGTGTTCTGTCATGCTAGCACA
AGCAACTGCCTCCTCGGTGGAGCTGTTTTTTCATGGTCTTGTTTGTTAGCCCCTCACGTC
GTGAGGAAGATGCTCTAGCTGCTGTCAAGAATCCCCTACCAAAACAGAGCCTGCCAGAGC
ATGTCTCTGGCCAGTCTCCCTCGACCCTCTTTCCTTATTCCGTGTGTATATCATTTTCCC
AGGT