Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d045550_T002
CDS Infomation	cds chromosome:B73_RefGen_v4:9:26527595:26531578:-1 gene:Zm00001d045550 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein
Sequence	ATGGCAATGGCTGCCGCTCCTCACAGTCATCACACTCCAGTGGGGGCCGCAGCGGCCACG TCCGCCGCCGTATCCATGCCCTGCTGCTCCTCCGCTTCCTGTTACGACGACAAGGACGGC GACCCGTCCTCCTCCTGGTCGCTGTCCTCGCCGCGGCGCCGGCAGCCGTACCGGCGCCTC CTCCGCGACGAGGCGCAGCGGCTCCGGCGCGCGCGGCGGAGCCAGGGCCCGGGCGCCGAC ACGCCGCGGTGGGTGCGGCGCACCACGGATCAGATGGCCCGGTACATCGAGGACGACCGC GCGGGGCACGTGTACGGGCGGCACGTGGTCGCCGCCGTCCGCGCGGTGCGGGCCACGGCG TCGCGCCCGTCCGCGGACATGCGCCAGGCCATGGCGTCGTTTGTTACCAGGCTCACCTTC CGCGAGATGTGCGTCGTGCTCCGCGAGCAGCGCGGCTGGCGTCAGGCGCGCGACTTCTTC GCTTGGATGAAGCTCCAGCTGTGCTACGAACCAAGCGTCGTCGCCTACACCGTTCTGCTG CGGTTGTATGGCAGGGTCGGGAAGGTGAAGCTTGCCGAAGAGACGTTTCTTGAGATGCTC CAGGTTGGCTGCGAGCCTGACGCCGTGGCGTGCGGGACCCTCCTGTGCGCGTACGCTAGG TGGGGGCGGCACGAGGACATGATGCTGTTCTACTCGGCGGTGCGCGGGCGGGGCCTAGTC CCTCCGATCTCTGTCTACAACTACATGATCTCGTCTCTGCAGAAGCAGAAGCTGCACGGC AAGGTCATCCATGTGTGGAAGCAGATGCTGGAAGCTGGCGCGCCGCCTAACCAATTCACC TACACAGTCGTCATCGGCTCCCTTGTGAAGGAAGATCTCCTGGAGGAGGCCGTCGATTTG TTCGGTGAGATGCGGCGGCGTAGGTTCGTTCCGGAAGAGGCGACTTACAGCCTGTTGATC AGTGCGAGCTCCAGACATGGCAAAGGAGAACAGGCGTTGCGGCTCTTCGAAGAGATGAAG GGCCAGGGAATCGCCCCCAGCAACTACACCTGTGCGTCTCTCTTGGCACTGCACTGCAAG AACGAAGACTACCCAAAGGCTCTTGCTCTCTTCTCTGACATGGAAAGCAGCAAGGTCATT CCTGACGAGGTCATCTACGGGATTCTTATCAGGATATACGGGAAACTCGGGCTTTACGAG GAGGCACGTCAGACGTTTGGCGAGATCGAGAAGGCAGGTCTTCTGAACGACGAGCAGACT TACGTGGCAATGGCTCAGGTCCACCTGAACGCTGGAGACTGTGACAGAGCACTGGAGGTG TTAGAATCTATGAAGACGAGAGGCGTGAAGCCTTCGCGCTTCTCTTACAGCGCTCTTCTC AGATGTCACGTCGCAAAGGAAGACGTAGTCGCCGCAGAAGACACCTTCAGAGCTCTCTCC CAGTCCCAGCACGGCCTCCCTGACGCGTTCTGCTGTAACGACATGCTCAGGCTGTACATG AGGCTGGGACGTCTAGACAAGGCCAGGGCACTGGTTTCGGTGCTGCTGAGGGAAGATGGT TTCCAGCTTGACGAGAACCTCTCTACGACAGTGATGGAGTTTTACTGCAAAAGCGGTATG GTTGAGGACGCAGAGAAGTTACTCGAAGATATTCAGAGGAACAGGAAACCCGTGAAGGTT CCAACGCTGCTTTTGCTTGTAGAGATGTACGCTAGAAACAGACCCAGTGTGGTTCTGGAA GAACGCAGCTCGTCGAGGGCACTCGGCAGTTCAGCAGCTAGCGTGGCCTTGAACTCCCTG TTGGACATGCCTGGGGGCTTGTCCAGTGTGTCCCTACTGATCAGCAGATTGGCTAGGGAA GGGAGCACAGATGAGGCGAGATTCATTTACGATCAGCTGACTGAACTGGGAACCAAGCCT GACGATTCGGCGGTCGCTACTCTGATCGTCCAGTATGGCCAGGCAAAGCAGTTAGAGCGA GCACAAGAACTATTCGATTCAGCGTCAGCGTCGTTCCCAGATGGGGCGCTTGTCTGCAAC GCCATGGTCGACGCGTTCTGTAAATGTGGCAGAGCTGAGGACGCGTACCATCTTTTCATG GAGATGGCTGATCAAGGCAGTTACAGAAATGCTGTGACAGCTAGCATTCTTGTCACTCAC CTGACTAAGCATGGGAAATTTCAAGAGGTTGAGAACATCATGCATGGCTGTTTCCGAGAT GAAGTCCAGCTCGACACTGCCTTGTACAACACATTTATCAAGTCGATGCTTGAATCAGGT AAACTGCATTCGGCCGTCAGCATATACGATCGCATGGTATCCTCTGGCGTTTCTCAGTCC ATGCAGACGTTCAATACAATGATAAGCTTCAGTCTTCTATCCAGTGTTTATGGCAAAGGA GGAAAGCTGGACAAGGCCGTTGAGATGTTTGCTGCTGCGCAGGAGCTGGGCCTGCCGATC GACGAGAAGATGTACACGAACATGCTTAGCTTATATGGGAAAGCCGGCAGGCATCAAGAG GCGTCTTTGATGTTCAAAAGAATGAAGGAAGATGGCATCAGACCTGGAAAGATCAGCTTC AACTCCATGATCAATGCCTACGCCACTTCAGGACTGTTCAGCGAGGCGAAAAGCGTGTTC CAGGAGATGCAGGACTGCGGGCACGCCCCCGACTCCTTCTCCTACCTCGCGCTGATCAGA GCGTACACGGAGGCTAAGCTGTACACCGAAGCAGAAGAAGCCATCCGGACGATGACGCTG AGCAGCAGCAACACGACCCCTTCCTGCCCGCACTTCAGCCACCTGATTCTCGCGTTCTTG AAGGAAGGCCGGGTCGGTGAAGCCCGGAGGATCTACGGCCAGATGATGGAGGTAGGCGTG GCTCCTGACCTGGCCTGCTGTAGGGCCATGATGAGGGTGTACGTGGACCGCGGTCTCGTC GACGATGGCATCTCGCTCTATGAGACGACGTGTGGGTCGTTGAAACCTGATAGCTTCGTC TTGAGCGCTGCGTTTCATCTGTATGAGCGTGCGGGCAGGGAGTGTGAAGCCCAGGGTGTC CTGGAGTCCATCAGTGCGAGTGGTACCTCCTTCCTGAGGAACATGAAGATTGGATTTGGA TCGTCTTTAAGAAGTTAG

Peptide Sequence

PEP ID	Zm00001d045550_P002
PEP Infomation	pep chromosome:B73_RefGen_v4:9:26527595:26531578:-1 gene:Zm00001d045550 transcript:Zm00001d045550_T002 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein
Sequence	MAMAAAPHSHHTPVGAAAATSAAVSMPCCSSASCYDDKDGDPSSSWSLSSPRRRQPYRRL LRDEAQRLRRARRSQGPGADTPRWVRRTTDQMARYIEDDRAGHVYGRHVVAAVRAVRATA SRPSADMRQAMASFVTRLTFREMCVVLREQRGWRQARDFFAWMKLQLCYEPSVVAYTVLL RLYGRVGKVKLAEETFLEMLQVGCEPDAVACGTLLCAYARWGRHEDMMLFYSAVRGRGLV PPISVYNYMISSLQKQKLHGKVIHVWKQMLEAGAPPNQFTYTVVIGSLVKEDLLEEAVDL FGEMRRRRFVPEEATYSLLISASSRHGKGEQALRLFEEMKGQGIAPSNYTCASLLALHCK NEDYPKALALFSDMESSKVIPDEVIYGILIRIYGKLGLYEEARQTFGEIEKAGLLNDEQT YVAMAQVHLNAGDCDRALEVLESMKTRGVKPSRFSYSALLRCHVAKEDVVAAEDTFRALS QSQHGLPDAFCCNDMLRLYMRLGRLDKARALVSVLLREDGFQLDENLSTTVMEFYCKSGM VEDAEKLLEDIQRNRKPVKVPTLLLLVEMYARNRPSVVLEERSSSRALGSSAASVALNSL LDMPGGLSSVSLLISRLAREGSTDEARFIYDQLTELGTKPDDSAVATLIVQYGQAKQLER AQELFDSASASFPDGALVCNAMVDAFCKCGRAEDAYHLFMEMADQGSYRNAVTASILVTH LTKHGKFQEVENIMHGCFRDEVQLDTALYNTFIKSMLESGKLHSAVSIYDRMVSSGVSQS MQTFNTMISFSLLSSVYGKGGKLDKAVEMFAAAQELGLPIDEKMYTNMLSLYGKAGRHQE ASLMFKRMKEDGIRPGKISFNSMINAYATSGLFSEAKSVFQEMQDCGHAPDSFSYLALIR AYTEAKLYTEAEEAIRTMTLSSSNTTPSCPHFSHLILAFLKEGRVGEARRIYGQMMEVGV APDLACCRAMMRVYVDRGLVDDGISLYETTCGSLKPDSFVLSAAFHLYERAGRECEAQGV LESISASGTSFLRNMKIGFGSSLRS

Transcript Sequence

Transcript ID	Zm00001d045550_T002
Transcript Infomation	cdna chromosome:B73_RefGen_v4:9:26527595:26531578:-1 gene:Zm00001d045550 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein
Sequence	CGCTTCCCTTCCCGCGCCCATGGCAATGGCTGCCGCTCCTCACAGTCATCACACTCCAGT GGGGGCCGCAGCGGCCACGTCCGCCGCCGTATCCATGCCCTGCTGCTCCTCCGCTTCCTG TTACGACGACAAGGACGGCGACCCGTCCTCCTCCTGGTCGCTGTCCTCGCCGCGGCGCCG GCAGCCGTACCGGCGCCTCCTCCGCGACGAGGCGCAGCGGCTCCGGCGCGCGCGGCGGAG CCAGGGCCCGGGCGCCGACACGCCGCGGTGGGTGCGGCGCACCACGGATCAGATGGCCCG GTACATCGAGGACGACCGCGCGGGGCACGTGTACGGGCGGCACGTGGTCGCCGCCGTCCG CGCGGTGCGGGCCACGGCGTCGCGCCCGTCCGCGGACATGCGCCAGGCCATGGCGTCGTT TGTTACCAGGCTCACCTTCCGCGAGATGTGCGTCGTGCTCCGCGAGCAGCGCGGCTGGCG TCAGGCGCGCGACTTCTTCGCTTGGATGAAGCTCCAGCTGTGCTACGAACCAAGCGTCGT CGCCTACACCGTTCTGCTGCGGTTGTATGGCAGGGTCGGGAAGGTGAAGCTTGCCGAAGA GACGTTTCTTGAGATGCTCCAGGTTGGCTGCGAGCCTGACGCCGTGGCGTGCGGGACCCT CCTGTGCGCGTACGCTAGGTGGGGGCGGCACGAGGACATGATGCTGTTCTACTCGGCGGT GCGCGGGCGGGGCCTAGTCCCTCCGATCTCTGTCTACAACTACATGATCTCGTCTCTGCA GAAGCAGAAGCTGCACGGCAAGGTCATCCATGTGTGGAAGCAGATGCTGGAAGCTGGCGC GCCGCCTAACCAATTCACCTACACAGTCGTCATCGGCTCCCTTGTGAAGGAAGATCTCCT GGAGGAGGCCGTCGATTTGTTCGGTGAGATGCGGCGGCGTAGGTTCGTTCCGGAAGAGGC GACTTACAGCCTGTTGATCAGTGCGAGCTCCAGACATGGCAAAGGAGAACAGGCGTTGCG GCTCTTCGAAGAGATGAAGGGCCAGGGAATCGCCCCCAGCAACTACACCTGTGCGTCTCT CTTGGCACTGCACTGCAAGAACGAAGACTACCCAAAGGCTCTTGCTCTCTTCTCTGACAT GGAAAGCAGCAAGGTCATTCCTGACGAGGTCATCTACGGGATTCTTATCAGGATATACGG GAAACTCGGGCTTTACGAGGAGGCACGTCAGACGTTTGGCGAGATCGAGAAGGCAGGTCT TCTGAACGACGAGCAGACTTACGTGGCAATGGCTCAGGTCCACCTGAACGCTGGAGACTG TGACAGAGCACTGGAGGTGTTAGAATCTATGAAGACGAGAGGCGTGAAGCCTTCGCGCTT CTCTTACAGCGCTCTTCTCAGATGTCACGTCGCAAAGGAAGACGTAGTCGCCGCAGAAGA CACCTTCAGAGCTCTCTCCCAGTCCCAGCACGGCCTCCCTGACGCGTTCTGCTGTAACGA CATGCTCAGGCTGTACATGAGGCTGGGACGTCTAGACAAGGCCAGGGCACTGGTTTCGGT GCTGCTGAGGGAAGATGGTTTCCAGCTTGACGAGAACCTCTCTACGACAGTGATGGAGTT TTACTGCAAAAGCGGTATGGTTGAGGACGCAGAGAAGTTACTCGAAGATATTCAGAGGAA CAGGAAACCCGTGAAGGTTCCAACGCTGCTTTTGCTTGTAGAGATGTACGCTAGAAACAG ACCCAGTGTGGTTCTGGAAGAACGCAGCTCGTCGAGGGCACTCGGCAGTTCAGCAGCTAG CGTGGCCTTGAACTCCCTGTTGGACATGCCTGGGGGCTTGTCCAGTGTGTCCCTACTGAT CAGCAGATTGGCTAGGGAAGGGAGCACAGATGAGGCGAGATTCATTTACGATCAGCTGAC TGAACTGGGAACCAAGCCTGACGATTCGGCGGTCGCTACTCTGATCGTCCAGTATGGCCA GGCAAAGCAGTTAGAGCGAGCACAAGAACTATTCGATTCAGCGTCAGCGTCGTTCCCAGA TGGGGCGCTTGTCTGCAACGCCATGGTCGACGCGTTCTGTAAATGTGGCAGAGCTGAGGA CGCGTACCATCTTTTCATGGAGATGGCTGATCAAGGCAGTTACAGAAATGCTGTGACAGC TAGCATTCTTGTCACTCACCTGACTAAGCATGGGAAATTTCAAGAGGTTGAGAACATCAT GCATGGCTGTTTCCGAGATGAAGTCCAGCTCGACACTGCCTTGTACAACACATTTATCAA GTCGATGCTTGAATCAGGTAAACTGCATTCGGCCGTCAGCATATACGATCGCATGGTATC CTCTGGCGTTTCTCAGTCCATGCAGACGTTCAATACAATGATAAGCTTCAGTCTTCTATC CAGTGTTTATGGCAAAGGAGGAAAGCTGGACAAGGCCGTTGAGATGTTTGCTGCTGCGCA GGAGCTGGGCCTGCCGATCGACGAGAAGATGTACACGAACATGCTTAGCTTATATGGGAA AGCCGGCAGGCATCAAGAGGCGTCTTTGATGTTCAAAAGAATGAAGGAAGATGGCATCAG ACCTGGAAAGATCAGCTTCAACTCCATGATCAATGCCTACGCCACTTCAGGACTGTTCAG CGAGGCGAAAAGCGTGTTCCAGGAGATGCAGGACTGCGGGCACGCCCCCGACTCCTTCTC CTACCTCGCGCTGATCAGAGCGTACACGGAGGCTAAGCTGTACACCGAAGCAGAAGAAGC CATCCGGACGATGACGCTGAGCAGCAGCAACACGACCCCTTCCTGCCCGCACTTCAGCCA CCTGATTCTCGCGTTCTTGAAGGAAGGCCGGGTCGGTGAAGCCCGGAGGATCTACGGCCA GATGATGGAGGTAGGCGTGGCTCCTGACCTGGCCTGCTGTAGGGCCATGATGAGGGTGTA CGTGGACCGCGGTCTCGTCGACGATGGCATCTCGCTCTATGAGACGACGTGTGGGTCGTT GAAACCTGATAGCTTCGTCTTGAGCGCTGCGTTTCATCTGTATGAGCGTGCGGGCAGGGA GTGTGAAGCCCAGGGTGTCCTGGAGTCCATCAGTGCGAGTGGTACCTCCTTCCTGAGGAA CATGAAGATTGGATTTGGATCGTCTTTAAGAAGTTAGAACTTAAACATGCTAGTTTTTCT CTTTTTTTTCAAGTGTTTGGGTTAAATATCTTAACTTATATTCTAGCTTTTCCAATATTT GGC