Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d045505_T006
CDS Infomation

cds chromosome:B73_RefGen_v4:9:24930204:24935411:1 gene:Zm00001d045505 gene_biotype:protein_coding transcript_biotype:protein_coding description:LIMR family protein

Sequence

ATGTGCGGCCTCGTCCTCGGCATCCTATACGGACTTGTTGGTAAAGTGGACTTCACTGTC
AGGCACCTATCTTCCTCGGTCCAGACATTTCCAAACTCATTTTCTGGATTCTCAAGTGGC
CAGCCGTGCATTAGTCCATTGACTCGTCAGTGTGCGGCTTCTACTGCACCGGCTAACTCG
CAAACAACTTGGACAATGCGTGCTACCTTCCCTGAATATGTGGTTGCTCTTACTACAATT
GTTGGATCTGTGCTTTTCACGATATTTGGTGGTGTCGGAATTGCCTGCCTTCCATTGGGA
CTTATATTCTCATTTGTTCGGCGTCCAAAAGCTGTAATTACACGCTCACAATATATAAAG
GAAGCAACTGAATTGGGGAAGAAGGCCAGGGAGCTGAAAAAGGCGGCTGAAGCTCTTCAC
CAAGAAGAAAGAAGTGGGAACAAGGGCCGGAAATGGCGAAAAAACGTGAAGGCTGTAGAG
AAGGAGTTACTACTTCTGGAAGATGACATGAAGGCTCTAGAAGAGATGTATCCTCAAGGA
GAACAGGCAGAGGCTACTTGGGCATTCACAGTCCTTGGGTACATTGGAAAACTTATATTT
GGTGTTGTTGGGTTAATTGTTTCAATAGCTTGGGTTGCACATATCGTCATATACTTGTTG
ATTGATCCTCCTCTATCTTCTTTCCTGAATGAAGTCTTCATAAAGTTGGATGGTGTTTGG
GGTCTCCTTGGGACTGCTGCTTTCGCATTCTTCTGCTTCTATCTCCTTATTGCAGTGATT
GCTGGGGAGATGATGCTTGGTTTGAAACTTGTTTTCATCACAATTCACCCAATGAAATGG
GGAGGCACTTTAATGAACTCCTTTTTGTTTAATGTTGGGCTCATACTACTTTGCTCCATC
AGTGTGATTCAGTTCTGTGCCACGGCTTTTGCCTATTATGCACAAGCAACTGCTGCTCAA
GAGATCTTTGGCCACACATTGCAATCCCTTCGTGGAATTAAGTATCTTTACAAGTACAAT
GTTTTCCAGTATGGCTTTGTTGCTCTTGCCATCCTCACACTCTTCTACTATGCTATATTT
GGGTGGAGAAAAAAGAAGCCAACAGGGAGGTTCCAGCTCTCAAAATGA

Peptide Sequence

PEP ID

Zm00001d045505_P006
PEP Infomation

pep chromosome:B73_RefGen_v4:9:24930204:24935411:1 gene:Zm00001d045505 transcript:Zm00001d045505_T006 gene_biotype:protein_coding transcript_biotype:protein_coding description:LIMR family protein

Sequence

MCGLVLGILYGLVGKVDFTVRHLSSSVQTFPNSFSGFSSGQPCISPLTRQCAASTAPANS
QTTWTMRATFPEYVVALTTIVGSVLFTIFGGVGIACLPLGLIFSFVRRPKAVITRSQYIK
EATELGKKARELKKAAEALHQEERSGNKGRKWRKNVKAVEKELLLLEDDMKALEEMYPQG
EQAEATWAFTVLGYIGKLIFGVVGLIVSIAWVAHIVIYLLIDPPLSSFLNEVFIKLDGVW
GLLGTAAFAFFCFYLLIAVIAGEMMLGLKLVFITIHPMKWGGTLMNSFLFNVGLILLCSI
SVIQFCATAFAYYAQATAAQEIFGHTLQSLRGIKYLYKYNVFQYGFVALAILTLFYYAIF
GWRKKKPTGRFQLSK

Transcript Sequence

Transcript ID

Zm00001d045505_T006
Transcript Infomation

cdna chromosome:B73_RefGen_v4:9:24930204:24935411:1 gene:Zm00001d045505 gene_biotype:protein_coding transcript_biotype:protein_coding description:LIMR family protein

Sequence

GCCTCGCCCCACCGTGTCTCCCTCCCCTCGGTGTCGTCAATCACCGCACCCGCTGCTGCT
AGCCCGCAACTCCCTCGCTTCCTGCACCCACATCCCCGCGGCGCTACCTGCCTACCCAGA
TCCCGCTCGCCGGTGGTGCCCTCCTCAGTCCTCACTCTCCCGCCGCTGGCGCCGCCGGAG
CGAGGGGGACTGCCCATACCCTACTAGGACGAGCAGTAGGAGGCGGAGGGGCGAGATCCG
GCGGAGGCCGCCCCGATGGGGGACTTCAATGTGGCACTGGTGATCGTGGCGGCGGTGGTC
AGCGTGCTGGTGCTGCTCGTCAGCGTCTACCTTCTCGTCAACTACCAGCACCCCGACGAC
GTCAACCAGGCCTACTTCCCCAAGCTCGTCGTCGTGCTCGGCCTCACCGTCGCCGTCCTC
TCCATCCTCATGCTCCCCGCCGACGTCGCCAACCGCCAGGCATGCCGCAAGGCCGTCTAC
AACGGCGCCTGCAGCCTCACGCTCCCCATGAGGACGCTCTGGCTCGTCGTTTACATCGTT
GACGCCGTCCTCGTCTTCCTCGTCATCCCCTTCGCAATGTTCTACTACGAGGGCGACCAG
GACAATGTGCGGCCTCGTCCTCGGCATCCTATACGGACTTGTTGGTAAAGTGGACTTCAC
TGTCAGGCACCTATCTTCCTCGGTCCAGACATTTCCAAACTCATTTTCTGGATTCTCAAG
TGGCCAGCCGTGCATTAGTCCATTGACTCGTCAGTGTGCGGCTTCTACTGCACCGGCTAA
CTCGCAAACAACTTGGACAATGCGTGCTACCTTCCCTGAATATGTGGTTGCTCTTACTAC
AATTGTTGGATCTGTGCTTTTCACGATATTTGGTGGTGTCGGAATTGCCTGCCTTCCATT
GGGACTTATATTCTCATTTGTTCGGCGTCCAAAAGCTGTAATTACACGCTCACAATATAT
AAAGGAAGCAACTGAATTGGGGAAGAAGGCCAGGGAGCTGAAAAAGGCGGCTGAAGCTCT
TCACCAAGAAGAAAGAAGTGGGAACAAGGGCCGGAAATGGCGAAAAAACGTGAAGGCTGT
AGAGAAGGAGTTACTACTTCTGGAAGATGACATGAAGGCTCTAGAAGAGATGTATCCTCA
AGGAGAACAGGCAGAGGCTACTTGGGCATTCACAGTCCTTGGGTACATTGGAAAACTTAT
ATTTGGTGTTGTTGGGTTAATTGTTTCAATAGCTTGGGTTGCACATATCGTCATATACTT
GTTGATTGATCCTCCTCTATCTTCTTTCCTGAATGAAGTCTTCATAAAGTTGGATGGTGT
TTGGGGTCTCCTTGGGACTGCTGCTTTCGCATTCTTCTGCTTCTATCTCCTTATTGCAGT
GATTGCTGGGGAGATGATGCTTGGTTTGAAACTTGTTTTCATCACAATTCACCCAATGAA
ATGGGGAGGCACTTTAATGAACTCCTTTTTGTTTAATGTTGGGCTCATACTACTTTGCTC
CATCAGTGTGATTCAGTTCTGTGCCACGGCTTTTGCCTATTATGCACAAGCAACTGCTGC
TCAAGAGATCTTTGGCCACACATTGCAATCCCTTCGTGGAATTAAGTATCTTTACAAGTA
CAATGTTTTCCAGTATGGCTTTGTTGCTCTTGCCATCCTCACACTCTTCTACTATGCTAT
ATTTGGGTGGAGAAAAAAGAAGCCAACAGGGAGGTTCCAGCTCTCAAAATGATTCATCAC
ATTTCCCCCCTGAGTGATAGTTCAGTTAGCGTCGTACGGATGTATATGAACGAAACCAAA
TCTTTTCAAAGAGCTGAGGAGCTGCAAATGGTGTATATTATCAACTACGTGACCTCAAAG
CCGAGAATGTTGGTTACCACGGACATGGATGTTAGAAGTAGAACCCAGTTAACTTTGCAG
CGTTTGGTGTGTTTGGGGGCGCTTTGCCGCCCCCAGTTCGATATTCATTTCTTGGTTGTG
TCTGGAGTTAGTCAGTTCATTGCTTTTGTATGTATTATATACTGTGATTACAACACAAGG
TTCTAGGTTGTATTAATGATATGTCCTGATCATTCCTGT