Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d045505_T004
CDS Infomation

cds chromosome:B73_RefGen_v4:9:24930151:24935418:1 gene:Zm00001d045505 gene_biotype:protein_coding transcript_biotype:protein_coding description:LIMR family protein

Sequence

ATGGGGGACTTCAATGTGGCACTGGTGATCGTGGCGGCGGTGGTCAGCGTGCTGGTGCTG
CTCGTCAGCGTCTACCTTCTCGTCAACTACCAGCACCCCGACGACGTCAACCAGGCCTAC
TTCCCCAAGCTCGTCGTCGTGCTCGGCCTCACCGTCGCCGTCCTCTCCATCCTCATGCTC
CCCGCCGACGTCGCCAACCGCCAGGCATGCCGCAAGGCCGTCTACAACGGCGCCTGCAGC
CTCACGCTCCCCATGAGGACGCTCTGGCTCGTCGTTTACATCGTTGACGCCGTCCTCGTC
TTCCTCGTCATCCCCTTCGCAATGTTCTACTACGAGGGCGACCAGGACAAGTCCGTCGGG
AAGAGGCTCAGGACCGCGCTCATCTGGGTCGTCGCGTCCGCGGTAGTGTGCGGCCTCGTC
CTCGGCATCCTATACGGACTTGTTGGTAAAGTGGACTTCACTGTCAGGCACCTATCTTCC
TCGGTCCAGACATTTCCAAACTCATTTTCTGGATTCTCAAGTGGCCAGCCGTGCATTAGT
CCATTGACTCGTCAGTGTGCGGCTTCTACTGCACCGGCTAACTCGCAAACAACTTGGACA
ATGCGTGCTACCTTCCCTGAATATGTGGTTGCTCTTACTACAATTGTTGGATCTGTGCTT
TTCACGATATTTGGTGGTGTCGGAATTGCCTGCCTTCCATTGGGACTTATATTCTCATTT
GTTCGGCGTCCAAAAGCTGTAATTACACGCTCACAATATATAAAGGCCAGGGAGCTGAAA
AAGGCGGCTGAAGCTCTTCACCAAGAAGAAAGAAGTGGGAACAAGGGCCGGAAATGGCGA
AAAAACGTGAAGGCTGTAGAGAAGGAGTTACTACTTCTGGAAGATGACATGAAGGCTCTA
GAAGAGATGTATCCTCAAGGAGAACAGGCAGAGGCTACTTGGGCATTCACAGTCCTTGGG
TACATTGGAAAACTTATATTTGGTGTTGTTGGGTTAATTGTTTCAATAGCTTGGGTTGCA
CATATCGTCATATACTTGTTGATTGATCCTCCTCTATCTTCTTTCCTGAATGAAGTCTTC
ATAAAGTTGGATGGTGTTTGGGGTCTCCTTGGGACTGCTGCTTTCGCATTCTTCTGCTTC
TATCTCCTTATTGCAGTGATTGCTGGGGAGATGATGCTTGGTTTGAAACTTGTTTTCATC
ACAATTCACCCAATGAAATGGGGAGGCACTTTAATGAACTCCTTTTTGTTTAATGTTGGG
CTCATACTACTTTGCTCCATCAGTGTGATTCAGTTCTGTGCCACGGCTTTTGCCTATTAT
GCACAAGCAACTGCTGCTCAAGAGATCTTTGGCCACACATTGCAATCCCTTCGTGGAATT
AAGTATCTTTACAAGTACAATGTTTTCCAGTATGGCTTTGTTGCTCTTGCCATCCTCACA
CTCTTCTACTATGCTATATTTGGGTGGAGAAAAAAGAAGCCAACAGGGAGGTTCCAGCTC
TCAAAATGA

Peptide Sequence

PEP ID

Zm00001d045505_P004
PEP Infomation

pep chromosome:B73_RefGen_v4:9:24930151:24935418:1 gene:Zm00001d045505 transcript:Zm00001d045505_T004 gene_biotype:protein_coding transcript_biotype:protein_coding description:LIMR family protein

Sequence

MGDFNVALVIVAAVVSVLVLLVSVYLLVNYQHPDDVNQAYFPKLVVVLGLTVAVLSILML
PADVANRQACRKAVYNGACSLTLPMRTLWLVVYIVDAVLVFLVIPFAMFYYEGDQDKSVG
KRLRTALIWVVASAVVCGLVLGILYGLVGKVDFTVRHLSSSVQTFPNSFSGFSSGQPCIS
PLTRQCAASTAPANSQTTWTMRATFPEYVVALTTIVGSVLFTIFGGVGIACLPLGLIFSF
VRRPKAVITRSQYIKARELKKAAEALHQEERSGNKGRKWRKNVKAVEKELLLLEDDMKAL
EEMYPQGEQAEATWAFTVLGYIGKLIFGVVGLIVSIAWVAHIVIYLLIDPPLSSFLNEVF
IKLDGVWGLLGTAAFAFFCFYLLIAVIAGEMMLGLKLVFITIHPMKWGGTLMNSFLFNVG
LILLCSISVIQFCATAFAYYAQATAAQEIFGHTLQSLRGIKYLYKYNVFQYGFVALAILT
LFYYAIFGWRKKKPTGRFQLSK

Transcript Sequence

Transcript ID

Zm00001d045505_T004
Transcript Infomation

cdna chromosome:B73_RefGen_v4:9:24930151:24935418:1 gene:Zm00001d045505 gene_biotype:protein_coding transcript_biotype:protein_coding description:LIMR family protein

Sequence

CGCACACTCACAGGCGCCAGCCTAGCCCACGCTGTTGTTCTCCTCTCTCAGTCGCCTCGC
CCCACCGTGTCTCCCTCCCCTCGGTGTCGTCAATCACCGCACCCGCTGCTGCTAGCCCGC
AACTCCCTCGCTTCCTGCACCCACATCCCCGCGGCGCTACCTGCCTACCCAGATCCCGCT
CGCCGGTGGTGCCCTCCTCAGTCCTCACTCTCCCGCCGCTGGCGCCGCCGGAGCGAGGGG
GACTGCCCATACCCTACTAGGACGAGCAGTAGGAGGCGGAGGGGCGAGATCCGGCGGAGG
CCGCCCCGATGGGGGACTTCAATGTGGCACTGGTGATCGTGGCGGCGGTGGTCAGCGTGC
TGGTGCTGCTCGTCAGCGTCTACCTTCTCGTCAACTACCAGCACCCCGACGACGTCAACC
AGGCCTACTTCCCCAAGCTCGTCGTCGTGCTCGGCCTCACCGTCGCCGTCCTCTCCATCC
TCATGCTCCCCGCCGACGTCGCCAACCGCCAGGCATGCCGCAAGGCCGTCTACAACGGCG
CCTGCAGCCTCACGCTCCCCATGAGGACGCTCTGGCTCGTCGTTTACATCGTTGACGCCG
TCCTCGTCTTCCTCGTCATCCCCTTCGCAATGTTCTACTACGAGGGCGACCAGGACAAGT
CCGTCGGGAAGAGGCTCAGGACCGCGCTCATCTGGGTCGTCGCGTCCGCGGTAGTGTGCG
GCCTCGTCCTCGGCATCCTATACGGACTTGTTGGTAAAGTGGACTTCACTGTCAGGCACC
TATCTTCCTCGGTCCAGACATTTCCAAACTCATTTTCTGGATTCTCAAGTGGCCAGCCGT
GCATTAGTCCATTGACTCGTCAGTGTGCGGCTTCTACTGCACCGGCTAACTCGCAAACAA
CTTGGACAATGCGTGCTACCTTCCCTGAATATGTGGTTGCTCTTACTACAATTGTTGGAT
CTGTGCTTTTCACGATATTTGGTGGTGTCGGAATTGCCTGCCTTCCATTGGGACTTATAT
TCTCATTTGTTCGGCGTCCAAAAGCTGTAATTACACGCTCACAATATATAAAGGCCAGGG
AGCTGAAAAAGGCGGCTGAAGCTCTTCACCAAGAAGAAAGAAGTGGGAACAAGGGCCGGA
AATGGCGAAAAAACGTGAAGGCTGTAGAGAAGGAGTTACTACTTCTGGAAGATGACATGA
AGGCTCTAGAAGAGATGTATCCTCAAGGAGAACAGGCAGAGGCTACTTGGGCATTCACAG
TCCTTGGGTACATTGGAAAACTTATATTTGGTGTTGTTGGGTTAATTGTTTCAATAGCTT
GGGTTGCACATATCGTCATATACTTGTTGATTGATCCTCCTCTATCTTCTTTCCTGAATG
AAGTCTTCATAAAGTTGGATGGTGTTTGGGGTCTCCTTGGGACTGCTGCTTTCGCATTCT
TCTGCTTCTATCTCCTTATTGCAGTGATTGCTGGGGAGATGATGCTTGGTTTGAAACTTG
TTTTCATCACAATTCACCCAATGAAATGGGGAGGCACTTTAATGAACTCCTTTTTGTTTA
ATGTTGGGCTCATACTACTTTGCTCCATCAGTGTGATTCAGTTCTGTGCCACGGCTTTTG
CCTATTATGCACAAGCAACTGCTGCTCAAGAGATCTTTGGCCACACATTGCAATCCCTTC
GTGGAATTAAGTATCTTTACAAGTACAATGTTTTCCAGTATGGCTTTGTTGCTCTTGCCA
TCCTCACACTCTTCTACTATGCTATATTTGGGTGGAGAAAAAAGAAGCCAACAGGGAGGT
TCCAGCTCTCAAAATGATTCATCACATTTCCCCCCTGAGTGATAGTTCAGTTAGCGTCGT
ACGGATGTATATGAACGAAACCAAATCTTTTCAAAGAGCTGAGGAGCTGCAAATGGTGTA
TATTATCAACTACGTGACCTCAAAGCCGAGAATGTTGGTTACCACGGACATGGATGTTAG
AAGTAGAACCCAGTTAACTTTGCAGCGTTTGGTGTGTTTGGGGGCGCTTTGCCGCCCCCA
GTTCGATATTCATTTCTTGGTTGTGTCTGGAGTTAGTCAGTTCATTGCTTTTGTATGTAT
TATATACTGTGATTACAACACAAGGTTCTAGGTTGTATTAATGATATGTCCTGATCATTC
CTGTGCCCGTT