Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Zea mays ) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d045492_T005
CDS Infomation	cds chromosome:B73_RefGen_v4:9:24420853:24425865:-1 gene:Zm00001d045492 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein
Sequence	ATGGCGACGCGGATGAAGGACGTGGCGCGGAGGTCGACCAAGAAGTACGTGGAGGAGGCG CTGTACCGGCGTCTGTTCCGGAAGGGGTCGACGCCGCAGGCGGTTCGAGAGGAGGTGGAT GGCTTCCTCGACAGCCGGAAGCGGGCGTTCAAGTGGGAGGTGGGCGTTTGCGTCCGCCGG ATGCGGCGGAACGCGCTCTACCGCCCGTCGCTCAAGGTTAGTGATCAAGCAATCCGCCTG GATCTCATTGCCAAATCGAGAGGCATCGCTGCTGCCGAGAAGTACTTTTTGGACCTCCCA GAAACATCCAAGACTCATCTTACATATGGCGCTCTTCTCAATTCTTACTGCAAAGAGTTG ATGACTGAGAAGGCCGAGTCCCTTATGGAGAAAATGAAGGAGCTCAACTTTGCTTTCACT GCCATGTCCTTCAACAGCTTAATGACGATGTACACCAAAGTCAACCAAGCTGAGAAGGTC CCCAGTATCATTCAGGACATGAAGGCAGATGACGTATTGCCAGATGTCTTTACTTATAAT GTTTGGATGAGGGCGCTTGCAGCTCTCAAGGACATACCAGGGGTTGAGAGGGTGATTGAA GAGATGAAACGGGATGGCCGTGTTGCTCCTGATTGGACAACATACAGCAACCTGGCTTCC ATATATGTTGAGGCTGGAATGTTTGAGAAGGCAGAGGCTGCTCTTAAGGAGCTTGAGAAG CGGAACACCAGCAATGACATCGAAGCCTACCAGTTCCTTATTACATTGTATGGGCGTACA CAGAACTTAGTGGAAGTTCACCGTGTCTGGCGATCGCTGAAGCGGGATAACCCTAGAATG GCAAACATGAGCTACCTTAACATGATTCAGGTTTTGGCCAACTTGAAGGACCTGTCTGCT GCCGAAGCCTGTTTTAAGGAGTGGGAAGCCCGACACATCCATCCACCCAAGACCAACACA AAGGGCTCGGGGGCAGATAATACACCTGGTGCAGATCCAAAATCTCCAAGTAACCCGCCT AATAATCAGTCTGGCACCAAGGAAACCGGGGACGAGACAGCAGAGGACCTCCAGCCGAAG CATCCAAAATATGACATCCGGGTAGCAAACGCTATGATCAAGGCGTACATTACCGAGGGC ATGCTTGACAAAGCTGTCGCCATGAAGAAGCGTGCCAAGATGCGCGGCGGAAGGCTGAAC GCCAAGACATGGGAGATCTTCATGGAGCATTACCTCAAGACGGGGGATCTCAAGATGGCC CATTGGTGCGCGGACCGCGCGATGAAGAAGGGGCACAGCAGCGGCAGGATTTGGGTGCCG CCGCCCGCCGTGACGGAGACCCTGATGAGCTACTTCGAGGAGAACAAGGACGTCGATGGG GCCGAGCGGTACGTGGGGGCTCTGAAGAAGGTGCAGAAGGATCTGGGCGCACCGGTGTTC GAGCCGCTGGTGCGGACGTACGCTGCCGCCGGGAAGAAGTTCCCCGGGATGCGGCAGCGG CTGAAGATCGAGAACGTGGAGGTCGGGGAGGGGACGGCCCAGCTGCTTGACTCTATCTGC GCCGATCAATAG

Peptide Sequence

PEP ID	Zm00001d045492_P005
PEP Infomation	pep chromosome:B73_RefGen_v4:9:24420853:24425865:-1 gene:Zm00001d045492 transcript:Zm00001d045492_T005 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein
Sequence	MATRMKDVARRSTKKYVEEALYRRLFRKGSTPQAVREEVDGFLDSRKRAFKWEVGVCVRR MRRNALYRPSLKVSDQAIRLDLIAKSRGIAAAEKYFLDLPETSKTHLTYGALLNSYCKEL MTEKAESLMEKMKELNFAFTAMSFNSLMTMYTKVNQAEKVPSIIQDMKADDVLPDVFTYN VWMRALAALKDIPGVERVIEEMKRDGRVAPDWTTYSNLASIYVEAGMFEKAEAALKELEK RNTSNDIEAYQFLITLYGRTQNLVEVHRVWRSLKRDNPRMANMSYLNMIQVLANLKDLSA AEACFKEWEARHIHPPKTNTKGSGADNTPGADPKSPSNPPNNQSGTKETGDETAEDLQPK HPKYDIRVANAMIKAYITEGMLDKAVAMKKRAKMRGGRLNAKTWEIFMEHYLKTGDLKMA HWCADRAMKKGHSSGRIWVPPPAVTETLMSYFEENKDVDGAERYVGALKKVQKDLGAPVF EPLVRTYAAAGKKFPGMRQRLKIENVEVGEGTAQLLDSICADQ

Transcript Sequence

Transcript ID	Zm00001d045492_T005
Transcript Infomation	cdna chromosome:B73_RefGen_v4:9:24420853:24425865:-1 gene:Zm00001d045492 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein
Sequence	GAGAGGGCGGAGGCGGAGATGGCGACGCGGATGAAGGACGTGGCGCGGAGGTCGACCAAG AAGTACGTGGAGGAGGCGCTGTACCGGCGTCTGTTCCGGAAGGGGTCGACGCCGCAGGCG GTTCGAGAGGAGGTGGATGGCTTCCTCGACAGCCGGAAGCGGGCGTTCAAGTGGGAGGTG GGCGTTTGCGTCCGCCGGATGCGGCGGAACGCGCTCTACCGCCCGTCGCTCAAGGTTAGT GATCAAGCAATCCGCCTGGATCTCATTGCCAAATCGAGAGGCATCGCTGCTGCCGAGAAG TACTTTTTGGACCTCCCAGAAACATCCAAGACTCATCTTACATATGGCGCTCTTCTCAAT TCTTACTGCAAAGAGTTGATGACTGAGAAGGCCGAGTCCCTTATGGAGAAAATGAAGGAG CTCAACTTTGCTTTCACTGCCATGTCCTTCAACAGCTTAATGACGATGTACACCAAAGTC AACCAAGCTGAGAAGGTCCCCAGTATCATTCAGGACATGAAGGCAGATGACGTATTGCCA GATGTCTTTACTTATAATGTTTGGATGAGGGCGCTTGCAGCTCTCAAGGACATACCAGGG GTTGAGAGGGTGATTGAAGAGATGAAACGGGATGGCCGTGTTGCTCCTGATTGGACAACA TACAGCAACCTGGCTTCCATATATGTTGAGGCTGGAATGTTTGAGAAGGCAGAGGCTGCT CTTAAGGAGCTTGAGAAGCGGAACACCAGCAATGACATCGAAGCCTACCAGTTCCTTATT ACATTGTATGGGCGTACACAGAACTTAGTGGAAGTTCACCGTGTCTGGCGATCGCTGAAG CGGGATAACCCTAGAATGGCAAACATGAGCTACCTTAACATGATTCAGGTTTTGGCCAAC TTGAAGGACCTGTCTGCTGCCGAAGCCTGTTTTAAGGAGTGGGAAGCCCGACACATCCAT CCACCCAAGACCAACACAAAGGGCTCGGGGGCAGATAATACACCTGGTGCAGATCCAAAA TCTCCAAGTAACCCGCCTAATAATCAGTCTGGCACCAAGGAAACCGGGGACGAGACAGCA GAGGACCTCCAGCCGAAGCATCCAAAATATGACATCCGGGTAGCAAACGCTATGATCAAG GCGTACATTACCGAGGGCATGCTTGACAAAGCTGTCGCCATGAAGAAGCGTGCCAAGATG CGCGGCGGAAGGCTGAACGCCAAGACATGGGAGATCTTCATGGAGCATTACCTCAAGACG GGGGATCTCAAGATGGCCCATTGGTGCGCGGACCGCGCGATGAAGAAGGGGCACAGCAGC GGCAGGATTTGGGTGCCGCCGCCCGCCGTGACGGAGACCCTGATGAGCTACTTCGAGGAG AACAAGGACGTCGATGGGGCCGAGCGGTACGTGGGGGCTCTGAAGAAGGTGCAGAAGGAT CTGGGCGCACCGGTGTTCGAGCCGCTGGTGCGGACGTACGCTGCCGCCGGGAAGAAGTTC CCCGGGATGCGGCAGCGGCTGAAGATCGAGAACGTGGAGGTCGGGGAGGGGACGGCCCAG CTGCTTGACTCTATCTGCGCCGATCAATAGGTGGTTTTCTTTTGTCCTCGCCGTTTGTGT TTGTCTCAATAACAGCAGGACCGTTTCGAGCGCTCGGCTATTTGCTCTGCAAGCGCTGTG ATGCCTGTATGTACTCTGAAATCCGGCCAACGTTTCTGTTCTTTTCGACATCATCAGCCC AAGCACGTCCTAGAGGCGGTGGCAGCGTTGGTGGCGGCTGCTATGCGATGGGGGCACCAC CTCCGTTGATGTATTGTCTGGTGCGGGACTGCGAGTGACCTCTGAGGCGGGGGCGGAGAA TAACTGGATCTACCTAACGTCGGAATGGAGACCTGCAGGTCCATTTGAAATTAAACAGAA GGTTGGTAAGAGTGTGATGGTGCTCATTTTGCGTTTTAGAGGATCCATACTTGCATGTAG CCAAAGAAACTATTTTAGTACCTTTTTTCCTTGTACTTTTTTTTTGTCTTATTGCTTTGC CTGGAGCTACTTGAAATGCTCCACAGTTATGTCCTCTTTTTAACTGAGATGTCGTTGGCC TG